Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001648.1 Hibiscus syriacus cultivar Beakdansim tig00003298_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60943

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
700--742
8
5.7
7
86
8
50
0
11
0
88
0.52
700--758
23
2.4
25
88
11
95
0
15
0
84
0.62
700--758
31
1.9
31
92
0
100
0
15
0
84
0.62
700--758
6
9.7
6
77
17
59
0
15
0
84
0.62
698--773
31
2.5
31
84
0
98
2
15
2
78
0.97
5595--5656
19
3.3
18
84
11
72
69
1
3
25
1.13
6511--6553
2
22.0
2
85
4
61
48
0
2
48
1.14
6565--6602
17
2.2
17
90
0
58
60
0
5
34
1.19
6597--6653
15
4.1
14
80
19
66
61
0
1
36
1.07
6583--6653
26
2.9
26
78
16
71
60
0
2
36
1.11
8016--8084
3
23.3
3
77
14
72
57
0
0
42
0.98
8007--8072
22
2.9
24
75
20
61
57
0
0
42
0.98
8005--8084
21
3.9
22
80
20
102
56
0
0
43
0.99
14793--14841
17
2.6
19
78
15
57
42
4
16
36
1.67
15751--15810
30
2.0
31
83
3
77
56
8
8
26
1.57
20648--20701
20
2.8
20
88
2
83
22
18
27
31
1.97
20728--20765
20
1.9
20
94
0
67
18
15
34
31
1.92
20604--20765
84
1.9
84
85
7
222
27
15
25
31
1.96
22907--22945
13
3.1
13
88
3
53
48
2
7
41
1.45
27340--27379
21
1.9
21
85
10
55
35
10
2
52
1.48
29439--29476
20
1.9
20
94
0
67
18
15
34
31
1.92
29739--29771
14
2.3
15
94
5
59
75
12
0
12
1.04
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29738--29772
15
2.3
16
85
14
56
77
11
0
11
1.00
32430--32502
18
4.2
17
68
6
56
38
6
13
41
1.72
32484--32574
34
2.7
34
76
10
96
42
14
13
29
1.83
36751--36775
2
12.5
2
100
0
50
52
0
0
48
1.00
41086--41160
20
3.8
20
90
0
123
33
13
30
22
1.92
41086--41176
40
2.3
40
86
7
123
34
13
30
21
1.92
41326--41383
20
2.7
22
81
5
66
29
13
25
31
1.94
41701--42149
54
8.3
54
88
1
666
31
19
19
29
1.96
48257--48308
20
2.6
20
93
0
86
34
17
30
17
1.93
48833--49186
54
6.6
54
92
0
573
31
19
20
28
1.97
51553--51632
41
2.1
38
88
9
117
41
22
10
26
1.85
51597--51657
24
2.5
24
89
7
88
40
21
8
29
1.82
51556--51683
62
2.0
63
89
4
195
40
22
9
27
1.84
51903--51931
2
14.5
2
100
0
58
48
0
0
51
1.00
53330--53374
21
2.2
20
84
11
56
51
11
2
35
1.50
54290--54335
23
2.0
22
95
4
83
30
26
8
34
1.86
55763--55806
18
2.4
18
75
24
56
36
25
0
38
1.56
55771--55806
16
2.1
18
90
10
58
36
25
0
38
1.56
57146--57342
30
6.8
30
74
14
162
25
14
19
40
1.89

Tables:   1

The End!