Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001649.1 Hibiscus syriacus cultivar Beakdansim tig00003300_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67137

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
729--1206
207
2.3
210
89
2
707
32
22
13
31
1.92
11404--11431
2
14.0
2
100
0
56
50
0
0
50
1.00
12584--12665
22
3.7
22
81
12
96
32
20
20
25
1.97
15147--15175
3
9.7
3
100
0
58
65
0
34
0
0.93
15643--15696
2
27.0
2
100
0
108
50
0
0
50
1.00
16058--16115
16
3.6
16
79
6
73
25
8
1
63
1.32
16300--16334
18
1.9
18
88
0
52
42
2
5
48
1.41
21212--21253
15
2.8
15
85
7
50
16
9
0
73
1.08
24073--24099
2
13.5
2
100
0
54
51
0
0
48
1.00
24258--24364
24
4.5
24
72
0
88
49
16
12
21
1.78
24258--24366
48
2.3
48
75
0
119
49
16
12
21
1.78
26853--26893
7
5.6
7
88
11
64
24
26
34
14
1.94
26854--26939
8
11.5
8
71
21
71
18
24
40
16
1.90
26854--26905
15
3.6
15
92
5
81
23
25
36
15
1.93
26867--26943
13
5.4
13
79
17
64
15
23
44
16
1.86
26882--26943
31
2.0
31
96
0
115
12
22
46
17
1.82
26894--26931
18
2.1
18
100
0
76
10
23
47
18
1.79
27970--28007
15
2.5
15
100
0
76
21
31
7
39
1.82
32442--32598
64
2.5
63
81
7
172
33
19
24
22
1.97
32991--33052
20
3.0
20
82
13
65
53
1
14
30
1.51
33456--33517
24
2.6
24
89
0
97
25
29
20
24
1.99
33456--33525
24
2.9
24
82
4
88
25
28
21
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33669--33722
28
1.9
28
81
7
65
37
1
18
42
1.61
36944--37100
64
2.5
63
80
7
172
33
19
23
23
1.97
37506--37557
21
2.4
21
81
12
61
51
0
15
32
1.43
37945--38006
24
2.6
24
74
2
63
19
27
24
29
1.98
49520--49736
110
2.0
110
89
1
337
31
19
11
37
1.87
50989--51023
3
11.7
3
100
0
70
34
0
0
65
0.93
51223--51257
13
2.5
15
81
18
56
40
40
8
11
1.72
51227--51257
13
2.4
13
100
0
62
41
38
6
12
1.69
52927--52956
12
2.5
12
94
0
51
76
0
0
23
0.78
54244--54285
16
2.7
15
85
10
50
71
0
2
26
0.98
54246--54293
25
2.0
24
87
4
69
70
2
2
25
1.09
54318--54417
38
2.6
38
84
12
118
48
4
1
47
1.27
54402--54458
16
3.6
16
80
7
62
45
7
1
45
1.40
55119--55158
21
1.9
21
84
0
53
35
20
17
27
1.95
57818--57883
21
3.1
21
75
0
60
43
10
4
40
1.59
57801--57882
42
2.0
41
83
7
103
41
9
4
43
1.59
62724--62782
29
2.0
30
83
9
77
20
22
5
52
1.65
64659--64724
23
2.9
23
83
0
69
12
10
13
63
1.52

Tables:   1

The End!