Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000165.1 Hibiscus syriacus cultivar Beakdansim tig00000291_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89583

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1514--1575
32
1.9
32
100
0
124
19
17
17
45
1.86
4988--5071
43
2.0
42
85
0
105
33
20
9
36
1.85
5826--5901
24
3.2
24
100
0
152
48
7
11
31
1.68
6532--6572
12
3.5
12
96
3
75
70
0
0
29
0.87
6532--6590
12
5.5
11
80
15
70
69
0
1
28
0.98
6532--6594
20
3.1
19
80
19
65
68
0
1
30
0.99
6532--6590
31
1.9
31
78
18
54
69
0
1
28
0.98
7885--7925
3
13.0
3
85
10
55
63
0
2
34
1.08
7885--7926
13
3.0
13
81
18
57
64
0
2
33
1.07
7885--7925
16
2.6
16
92
0
64
63
0
2
34
1.08
9298--9331
14
2.4
14
90
0
50
47
2
0
50
1.16
10127--10179
22
2.4
22
90
0
79
32
18
7
41
1.79
10604--10875
83
3.3
82
79
3
244
31
23
13
30
1.94
11501--11534
16
2.1
16
88
0
50
26
35
23
14
1.94
11572--11614
15
2.8
16
82
7
61
25
32
27
13
1.94
17026--17072
18
2.6
19
83
10
62
63
4
4
27
1.31
20264--20314
1
51.0
1
80
0
57
90
0
0
9
0.46
20266--20316
6
8.2
6
91
4
66
88
0
0
11
0.52
20244--20316
20
3.8
20
81
15
82
84
0
2
12
0.71
20245--20319
32
2.3
33
88
4
107
84
0
2
13
0.74
23057--23095
18
2.1
19
90
4
62
64
0
7
28
1.21
34550--34626
7
10.9
7
77
17
63
36
3
0
59
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34536--34630
28
3.4
28
100
0
190
35
4
0
60
1.17
35140--35182
14
2.8
15
86
10
52
53
0
0
46
1.00
35140--35173
15
2.1
17
89
10
54
55
0
0
44
0.99
39298--39356
28
2.1
28
84
9
75
30
3
5
61
1.34
39782--39841
31
1.9
32
86
3
86
25
0
23
51
1.48
39821--39870
24
2.1
24
92
0
82
22
2
22
54
1.55
39949--40003
2
27.5
2
100
0
110
50
0
0
49
1.00
40032--40112
31
2.6
31
86
1
101
59
8
8
23
1.55
40920--40981
21
2.9
22
74
11
67
32
16
27
24
1.96
40920--40996
21
3.6
21
73
15
61
32
15
28
23
1.95
41036--41076
22
1.9
21
90
5
64
29
21
24
24
1.99
43446--43762
159
2.0
160
97
0
600
37
22
18
21
1.95
47113--47238
35
3.6
34
83
7
164
31
14
20
33
1.92
48922--48954
17
1.9
17
93
0
57
39
9
6
45
1.61
48956--48995
13
2.9
14
88
3
55
42
22
17
17
1.89
49876--49963
24
3.6
24
78
7
88
47
26
0
26
1.52
51643--51681
14
2.6
15
80
11
53
71
7
2
17
1.21
52527--52565
17
2.2
17
86
9
51
2
20
12
64
1.40
52756--52795
16
2.6
16
96
4
73
17
17
57
7
1.62
52767--52807
16
2.7
15
88
3
55
19
17
51
12
1.76
52915--53004
3
30.0
3
86
0
126
60
0
0
40
0.97
53256--53364
42
2.7
40
95
2
191
18
22
11
47
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53415--53787
113
3.3
113
87
3
486
31
18
12
36
1.89
53581--53929
186
1.9
186
92
1
583
31
18
13
36
1.90
53694--53861
73
2.3
73
90
0
264
35
17
14
33
1.90
54651--54872
83
2.7
84
97
2
412
36
22
14
25
1.92
67442--67480
14
2.6
15
80
11
53
71
7
2
17
1.21
68328--68366
17
2.2
17
86
9
51
2
20
12
64
1.40
68561--68596
16
2.2
16
100
0
72
19
16
55
8
1.66
68568--68608
16
2.7
15
88
3
55
19
17
51
12
1.76
68716--68826
3
37.0
3
90
0
177
62
0
0
37
0.96
68947--68997
22
2.4
21
90
6
77
41
3
1
52
1.31
69297--69349
24
2.2
24
78
18
65
60
0
3
35
1.15
69300--69348
25
2.0
26
88
8
75
57
0
4
38
1.18
69459--69501
20
2.1
21
86
4
61
58
0
4
37
1.19
75948--75986
19
2.1
19
95
0
69
41
12
5
41
1.65
81811--81924
59
1.9
59
92
0
192
36
21
16
24
1.94
86538--86580
17
2.5
17
88
0
59
46
11
16
25
1.80
88835--89537
251
2.8
252
81
8
762
33
15
17
33
1.91
89248--89325
40
2.0
40
84
5
104
24
16
17
41
1.90

Tables:   1

The End!