Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001650.1 Hibiscus syriacus cultivar Beakdansim tig00003301_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96756

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1101--1303
95
2.1
95
86
1
282
34
15
22
26
1.94
1634--1919
55
5.4
53
78
10
282
30
18
19
32
1.96
1628--1912
104
2.7
108
80
8
321
30
18
19
31
1.96
7794--7979
93
2.0
95
86
4
261
34
16
23
25
1.95
7795--8001
93
2.2
93
83
5
238
34
15
24
25
1.95
7820--8013
95
2.1
93
82
5
230
34
16
23
25
1.95
8336--8742
54
7.5
54
85
0
508
28
18
18
33
1.95
10805--10841
15
2.5
15
90
0
56
70
2
13
13
1.28
12150--12183
16
2.1
17
88
5
52
76
2
5
14
1.09
12160--12206
7
6.4
7
82
7
58
70
0
4
25
1.05
12231--12279
20
2.4
22
86
13
77
46
8
2
42
1.45
12231--12273
21
2.0
21
91
8
70
48
9
2
39
1.48
12259--12314
28
1.9
30
85
7
80
42
5
3
48
1.43
12301--12343
2
21.5
2
100
0
86
48
0
0
51
1.00
12325--12637
37
8.4
38
83
8
349
44
8
2
44
1.49
12327--12638
38
8.4
36
86
7
344
43
8
2
44
1.49
21101--21129
13
2.1
14
93
6
51
24
24
6
44
1.77
22165--22210
21
2.1
22
84
11
60
28
13
4
54
1.57
29318--29347
14
2.1
14
100
0
60
33
10
36
20
1.86
57420--57587
56
2.9
58
84
7
216
27
18
24
29
1.98
57415--57599
59
3.2
59
83
9
245
27
17
25
29
1.98
57951--58022
36
2.0
36
97
0
135
43
16
16
23
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60207--60247
20
2.0
20
90
0
64
14
21
21
41
1.89
68774--68815
16
2.6
16
92
0
66
21
47
16
14
1.82
69770--69821
22
2.4
22
100
0
104
50
0
7
42
1.31
71881--71907
11
2.5
11
100
0
54
74
0
0
25
0.83
73569--74543
113
8.3
121
81
8
838
26
20
14
38
1.91
73899--74543
113
5.7
113
84
6
863
27
20
14
37
1.91
73569--74556
237
4.2
234
83
8
1140
26
20
14
38
1.91
74133--74558
220
1.9
225
88
2
655
28
20
14
37
1.91
75355--75475
22
5.5
22
90
0
197
40
13
11
34
1.80
76630--76877
75
3.3
74
85
4
309
31
22
16
30
1.96
79384--79480
32
3.0
32
96
0
176
18
16
20
44
1.87
80087--80167
17
4.8
17
78
15
78
3
13
0
82
0.79
80081--80167
33
2.5
34
78
12
90
3
13
0
82
0.79
80080--80145
1
66.0
1
75
0
51
4
9
0
86
0.70
80080--80163
25
3.3
26
75
21
88
3
13
0
83
0.77
80151--80204
26
2.0
26
96
3
99
3
12
11
72
1.25
80491--80548
2
29.0
2
100
0
116
50
0
0
50
1.00
82738--82786
12
3.9
12
79
10
53
57
8
12
22
1.61
82728--82784
26
2.2
26
90
0
87
57
7
14
21
1.60
82844--82885
7
6.0
7
78
10
50
54
14
16
14
1.71
85233--85259
11
2.5
11
100
0
54
74
0
0
25
0.83
86624--86650
10
2.7
10
100
0
54
22
18
40
18
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87633--87687
20
2.8
20
88
0
83
45
16
14
23
1.84
87945--87996
21
2.7
19
80
13
61
34
21
17
26
1.95
87945--88002
21
2.9
20
76
20
59
32
20
18
27
1.97
89454--89481
9
3.1
9
100
0
56
25
0
32
42
1.55
91624--91671
24
2.0
24
100
0
96
20
12
4
62
1.46

Tables:   1

The End!