genome.fa.s1651.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001651.1 Hibiscus syriacus cultivar Beakdansim tig00003303_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139104

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6899--6955	30	1.9	30	100	0	114	15	14	21	49	1.80
7524--7556	2	16.5	2	100	0	66	51	0	0	48	1.00
9118--9246	64	2.0	64	89	3	197	37	20	10	31	1.87
9444--9598	43	3.6	43	83	3	195	30	27	18	23	1.97
9761--9979	120	1.8	120	87	0	330	31	25	19	24	1.98
9825--10143	164	2.0	163	82	3	399	32	25	18	24	1.97
10146--10808	84	8.0	83	84	3	724	32	23	19	24	1.97
14502--14531	2	15.0	2	100	0	60	50	0	0	50	1.00
16205--16242	16	2.3	16	95	4	67	26	7	28	36	1.84
26193--26257	23	2.7	23	75	20	71	78	0	10	10	0.97
26204--26270	13	5.4	12	74	16	57	77	0	13	8	0.98
26194--26256	16	3.9	17	75	19	64	77	0	11	11	0.99
27274--28092	55	14.9	55	88	1	1090	31	15	25	27	1.96
27999--28155	55	2.9	54	85	5	203	30	21	24	24	1.99
30326--30373	2	24.0	2	100	0	96	50	0	0	50	1.00
34297--34400	45	2.3	47	82	12	137	43	9	12	34	1.75
35675--35704	2	15.0	2	100	0	60	50	0	0	50	1.00
37833--37946	60	1.9	60	82	7	142	31	14	16	37	1.88
38574--38621	23	2.1	23	84	0	60	35	10	18	35	1.85
39043--39105	23	2.7	23	92	0	99	38	20	4	36	1.74
39472--39534	23	2.7	23	92	0	99	38	20	4	36	1.74
39899--39961	23	2.7	23	92	0	99	38	20	4	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38688--40162	427	3.5	428	98	1	2874	38	12	7	40	1.72
40379--40463	38	2.2	39	91	2	136	18	14	18	48	1.81
40721--40757	18	2.1	18	89	0	56	51	10	5	32	1.60
41177--41325	23	6.5	23	87	3	210	40	18	5	34	1.74
41177--41325	46	3.2	46	95	0	262	40	18	5	34	1.74
41671--41736	25	2.6	25	80	0	87	42	13	9	34	1.76
42923--42960	15	2.5	15	80	16	51	18	10	23	47	1.79
42821--44103	198	6.5	198	97	0	2415	32	16	15	36	1.90
44228--44276	19	2.6	19	93	0	80	57	10	2	30	1.43
46052--46112	32	1.9	32	89	0	95	22	47	0	29	1.52
46146--46209	21	3.1	21	77	4	67	15	29	15	39	1.89
48414--48460	20	2.4	19	80	19	69	21	17	10	51	1.75
48582--48626	20	2.3	19	92	7	81	15	17	11	55	1.68
48583--48635	20	2.7	20	88	8	65	16	16	13	52	1.74
48696--48733	20	1.9	20	84	10	51	28	5	10	55	1.56
49993--50148	53	3.0	52	92	2	251	38	10	17	32	1.85
56734--56760	14	1.9	14	100	0	54	7	14	18	59	1.58
56810--56858	17	3.0	15	76	21	53	40	20	2	36	1.64
59415--59457	21	2.0	21	81	0	50	30	30	25	13	1.94
59437--59590	68	2.2	69	86	5	206	27	26	27	18	1.98
59948--60007	30	2.0	31	90	3	95	36	6	23	33	1.81
60243--60288	22	2.1	22	91	0	74	17	26	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66312--66354	21	2.0	21	81	0	50	30	30	25	13	1.94
66312--66470	66	2.4	66	79	10	180	28	24	27	18	1.98
66844--66903	30	2.0	31	90	3	95	36	6	23	33	1.81
67123--67189	22	3.0	22	100	0	134	19	26	26	26	1.99
79456--79486	13	2.4	13	94	0	53	25	48	9	16	1.76
81492--81552	29	2.1	29	96	0	113	14	13	34	37	1.85
85644--86230	289	2.0	291	94	1	1027	20	10	25	43	1.83
87679--87707	8	3.8	8	95	4	51	75	0	0	24	0.80
88149--88678	41	12.8	41	82	3	560	27	19	17	34	1.95
88149--88678	166	3.2	166	83	2	640	27	19	17	34	1.95
88149--88676	207	2.5	206	84	1	696	28	19	17	34	1.95
89346--89396	25	2.0	25	88	0	75	43	7	9	39	1.67
89732--89796	30	2.2	30	100	0	130	27	3	27	41	1.71
89113--89872	377	2.0	374	94	2	1247	38	12	14	33	1.84
96320--96381	23	2.7	23	84	0	79	25	24	20	29	1.99
96444--96546	34	3.1	33	87	9	154	66	2	3	27	1.24
96708--96775	26	2.5	27	90	9	111	23	0	29	47	1.52
96696--96762	34	2.0	34	88	5	100	25	0	26	47	1.52
96835--96883	15	3.3	15	82	0	71	48	6	18	26	1.71
96837--96907	30	2.4	30	88	2	99	45	7	14	33	1.71
97014--97112	49	2.0	50	80	9	114	47	2	0	50	1.12
97062--97231	88	1.9	86	81	9	200	45	0	4	50	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97247--97324	28	2.8	28	78	21	83	55	1	0	43	1.08
97350--97430	30	2.7	29	78	14	85	50	0	0	49	1.00
97606--97724	42	2.8	42	94	0	211	45	17	19	17	1.86
107689--108040	151	2.3	150	96	0	632	21	14	19	44	1.86
112892--112932	20	2.0	22	90	9	68	39	2	4	53	1.35
113043--113097	24	2.2	24	83	6	65	38	3	5	52	1.42
113050--113297	76	3.2	76	70	16	256	39	7	7	45	1.60
113032--113368	155	2.2	155	98	0	647	38	8	6	46	1.60
113128--113368	79	3.1	79	68	16	248	36	9	7	46	1.64
119070--119285	41	5.2	41	88	2	308	23	19	24	32	1.97
119109--119288	21	8.8	20	64	20	61	22	20	24	32	1.97
119090--119157	20	3.3	20	67	18	59	23	19	22	35	1.96
119947--119976	6	5.2	6	96	4	53	0	16	53	30	1.44
120887--120918	13	2.5	13	94	0	55	12	9	3	75	1.16
121547--121588	20	2.1	20	100	0	84	4	9	23	61	1.45
122181--122223	14	2.9	14	80	12	50	6	13	27	51	1.67
123127--123170	2	22.0	2	100	0	88	50	0	0	50	1.00
134629--134671	21	2.0	22	86	8	63	44	2	0	53	1.13

Tables:   1

The End!