Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001652.1 Hibiscus syriacus cultivar Beakdansim tig00003305_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56924

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4190--4232
17
2.5
17
81
7
52
39
13
4
41
1.66
9467--9513
20
2.4
19
82
6
58
46
6
12
34
1.67
13113--13147
13
2.7
13
90
0
52
2
31
45
20
1.65
13710--13750
16
2.4
18
80
19
61
39
0
0
60
0.96
13723--13774
20
2.6
18
73
23
50
34
1
0
63
1.06
13789--13844
2
28.0
2
96
0
103
48
0
0
51
1.00
14181--14220
12
3.1
13
79
13
55
50
0
0
50
1.00
14707--14771
9
7.0
9
72
17
53
26
3
1
69
1.12
14707--14770
20
3.5
17
82
10
65
26
3
1
68
1.13
19680--19763
7
12.3
7
75
12
68
80
3
14
1
0.90
19669--19746
27
3.0
27
81
9
92
75
7
14
2
1.12
19707--19763
16
3.6
16
86
6
80
85
0
14
0
0.59
19714--19763
8
6.1
8
82
13
66
88
0
12
0
0.53
19680--19763
24
3.4
23
83
9
87
80
3
14
1
0.90
21831--22052
114
1.9
114
88
0
336
34
15
19
30
1.93
22988--23165
74
2.4
75
82
3
207
32
17
21
29
1.96
24043--24197
54
2.9
55
89
1
233
37
13
23
25
1.92
24564--24618
22
2.5
22
88
5
85
34
10
14
40
1.81
25293--25665
76
4.9
76
99
0
737
22
20
23
33
1.97
25838--25902
3
20.3
3
84
6
67
43
0
0
56
0.99
27302--27343
16
2.6
16
85
14
52
35
0
0
64
0.94
27340--27373
17
2.0
17
88
11
52
29
5
0
64
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27391--27434
2
22.0
2
95
0
79
47
0
0
52
1.00
32289--32347
21
2.8
21
89
0
91
6
30
40
22
1.79
45952--46030
12
6.7
12
85
1
106
25
37
0
36
1.56
47686--47721
2
18.5
2
88
5
56
50
2
0
47
1.15
47694--47726
17
1.9
17
93
0
57
51
3
0
45
1.16
48877--48929
2
26.5
2
100
0
106
49
0
0
50
1.00
49015--49065
12
4.2
12
74
18
52
31
3
1
62
1.24
50230--50263
16
2.1
16
94
0
59
17
2
0
79
0.86
52523--52566
23
1.9
23
86
9
63
18
6
4
70
1.27

Tables:   1

The End!