Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001653.1 Hibiscus syriacus cultivar Beakdansim tig00003308_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66976

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4167--4197
14
2.2
14
94
0
53
61
6
25
6
1.45
4738--4770
2
16.5
2
100
0
66
48
0
0
51
1.00
17749--17824
20
3.6
21
76
11
75
25
19
21
34
1.96
17791--17828
20
1.9
20
100
0
76
31
15
23
28
1.96
17792--17843
20
2.5
20
87
3
68
30
15
23
30
1.95
18056--18103
21
2.4
19
80
12
60
50
10
14
25
1.74
18064--18105
21
2.0
21
90
0
66
47
11
11
28
1.76
19206--19243
19
2.0
20
94
5
69
31
13
7
47
1.71
20756--20820
33
2.0
32
85
11
87
29
27
16
26
1.97
21073--21109
19
1.9
19
94
0
65
21
21
16
40
1.91
23648--23751
2
53.5
2
78
9
63
57
1
4
35
1.31
23797--23823
2
13.5
2
100
0
54
51
0
0
48
1.00
25493--25765
106
2.6
106
90
1
417
23
17
24
33
1.96
25887--26098
106
2.0
106
90
0
334
22
17
24
34
1.96
25310--26097
394
2.0
394
94
0
1396
23
19
23
33
1.97
26794--26878
37
2.3
37
81
4
91
42
15
17
24
1.88
27036--27137
36
2.8
36
92
0
168
39
16
21
22
1.92
27192--27304
34
3.3
34
100
0
226
23
16
30
29
1.97
27692--27727
18
2.0
18
100
0
72
38
33
11
16
1.84
28791--28852
16
3.7
16
78
17
72
0
14
8
77
0.98
28797--28844
20
2.3
21
86
13
73
0
14
6
79
0.92
30768--30801
15
2.1
15
89
10
50
73
0
14
11
1.10
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32110--32141
2
16.0
2
100
0
64
50
0
0
50
1.00
33302--33451
60
2.5
59
81
6
151
54
8
8
28
1.59
36206--36322
61
1.9
61
96
0
216
35
8
18
37
1.82
36751--37017
21
12.9
21
92
1
371
20
16
30
31
1.95
36759--37017
62
4.2
63
88
4
364
21
16
30
31
1.95
36751--37033
102
2.8
102
85
2
307
20
16
30
31
1.95
37742--37846
28
3.6
28
74
12
86
40
11
8
39
1.72
37908--37959
23
2.3
22
83
6
59
48
7
9
34
1.65
37953--38057
29
3.6
29
78
10
124
39
12
10
38
1.77
40682--40722
2
20.5
2
100
0
82
0
48
0
51
1.00
44133--44177
2
22.5
2
100
0
90
48
0
0
51
1.00
46425--46466
21
2.0
21
90
0
66
16
4
19
59
1.54
56316--56360
21
2.1
21
87
0
63
31
28
24
15
1.96
58028--58087
23
2.6
23
94
0
102
20
28
28
23
1.99
59452--59509
23
2.5
23
77
0
71
27
18
20
32
1.97
59497--59555
24
2.5
24
83
2
75
22
22
20
35
1.96
66688--66764
19
3.8
20
77
14
68
24
35
25
14
1.93

Tables:   1

The End!