genome.fa.s1655.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001655.1 Hibiscus syriacus cultivar Beakdansim tig00003311_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63185

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4156--4210	23	2.4	24	82	8	62	20	3	1	74	1.06
7625--7672	16	2.9	16	77	14	53	0	14	10	75	1.06
7616--7676	9	6.1	9	75	17	50	1	13	9	75	1.12
7606--7677	21	3.4	21	76	16	76	1	12	12	73	1.16
7625--7713	32	2.8	32	80	12	105	0	17	8	73	1.09
7629--7704	21	3.4	22	80	9	66	0	15	9	75	1.05
7606--7698	44	2.1	43	82	9	109	1	13	11	73	1.16
7686--7716	14	2.2	14	94	0	53	0	22	6	70	1.09
12702--12755	19	2.9	19	86	10	76	0	11	5	83	0.80
14630--14934	129	2.4	129	89	1	459	25	21	20	32	1.98
15621--15664	19	2.3	19	84	11	54	47	4	4	43	1.44
25302--25335	16	2.2	15	89	5	50	58	8	0	32	1.29
28136--28291	79	2.0	79	88	1	233	34	13	12	39	1.82
29122--29174	21	2.5	21	81	6	72	20	26	18	33	1.96
29183--29297	20	5.7	20	86	6	142	32	26	19	21	1.97
29181--29317	41	3.4	41	83	6	179	34	25	18	21	1.96
29484--29527	22	2.0	22	86	0	61	20	40	15	22	1.90
29790--29848	20	3.0	20	87	0	73	15	18	22	44	1.87
31172--31215	18	2.4	18	88	0	70	27	45	11	15	1.81
31750--31816	20	3.4	20	81	2	73	38	23	22	14	1.92
31805--31863	14	3.9	14	76	20	64	49	23	16	10	1.77
31789--31847	19	3.4	19	73	22	74	47	20	18	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31789--31868	33	2.4	33	97	0	151	47	22	18	11	1.80
31875--31971	19	5.6	19	70	22	88	13	20	21	44	1.86
31880--31971	33	2.8	33	96	0	166	13	19	21	45	1.84
31899--31955	14	3.7	14	72	20	51	10	15	24	49	1.76
31956--32010	20	2.8	19	83	8	65	16	23	23	36	1.94
33698--33734	14	2.6	14	86	0	56	32	0	18	48	1.49
33856--33920	14	4.3	14	75	17	58	50	23	18	7	1.72
33841--33920	33	2.4	33	93	0	133	48	22	18	10	1.77
33841--33901	19	3.5	19	78	21	78	45	21	21	11	1.82
33926--34062	19	7.7	19	72	16	123	13	22	19	44	1.85
33930--34020	33	2.8	33	94	0	155	10	23	19	46	1.82
34036--34108	20	3.6	20	70	17	69	23	19	24	32	1.97
37357--37428	20	3.6	20	94	0	117	27	20	26	25	1.99
37342--37473	41	3.2	41	76	6	133	23	18	23	34	1.96
37361--37470	20	5.4	20	81	6	114	24	19	26	30	1.98
37459--37514	21	2.7	21	100	0	112	21	23	16	39	1.92
37524--37573	21	2.4	22	80	6	68	36	18	26	20	1.95
38325--38411	28	3.3	27	71	22	94	52	3	1	42	1.25
43664--43775	39	2.8	39	89	1	170	30	8	13	48	1.71
43968--44082	54	2.1	54	82	3	133	36	20	14	28	1.92
46673--46783	39	2.8	39	90	1	177	30	8	13	47	1.72
46974--47088	54	2.1	54	81	0	131	35	20	14	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48792--48861	32	2.2	33	80	15	83	50	10	2	37	1.51
54133--54222	32	2.9	31	79	12	112	18	28	27	24	1.98
54117--54202	31	2.7	31	83	5	102	16	30	27	25	1.97
54116--54250	63	2.1	64	81	9	161	18	26	26	28	1.98
55081--55114	17	2.0	17	88	0	50	20	0	5	73	1.04
57212--57246	2	17.5	2	100	0	70	48	0	0	51	1.00

Tables:   1

The End!