Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001656.1 Hibiscus syriacus cultivar Beakdansim tig00003312_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91910

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1904--1929
13
2.0
13
100
0
52
61
7
0
30
1.24
12492--12595
30
3.5
30
74
6
95
23
18
21
37
1.94
13797--13871
37
2.0
37
82
10
91
49
4
1
45
1.29
18422--18451
5
6.0
5
100
0
60
40
0
0
60
0.97
21820--21958
69
2.0
69
98
0
269
30
22
10
36
1.87
24671--24705
14
2.5
14
90
0
52
54
0
5
40
1.24
25679--25728
19
2.5
21
78
18
61
22
18
20
40
1.92
25659--25727
20
3.5
19
74
20
61
17
20
20
42
1.90
25718--25771
22
2.5
22
87
0
90
18
16
27
37
1.93
25659--25735
40
1.9
40
84
7
102
19
20
19
40
1.92
25869--25978
6
19.7
6
91
6
155
27
53
18
0
1.50
26465--26544
6
13.5
6
98
1
153
0
16
51
32
1.45
26651--26781
41
3.2
41
94
0
217
38
22
16
22
1.92
26669--26781
22
5.4
22
70
16
105
38
24
15
21
1.91
26691--26760
19
3.5
19
72
11
68
40
22
14
22
1.90
27549--28617
392
2.7
391
88
2
1560
27
14
19
38
1.91
32124--32189
2
33.0
2
96
0
123
48
1
0
50
1.10
35760--35913
78
2.0
75
94
3
272
20
13
7
58
1.60
35969--36011
21
2.0
21
86
8
61
30
6
0
62
1.21
46748--46773
1
26.0
1
100
0
52
100
0
0
0
0.00
47357--47383
1
27.0
1
100
0
54
100
0
0
0
0.00
47580--48040
106
4.4
106
93
1
721
31
25
20
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49892--50053
79
2.1
77
94
4
281
20
12
7
59
1.58
50111--50147
19
1.9
19
89
10
58
27
5
0
67
1.12
53674--53730
30
1.9
30
85
0
78
40
15
24
19
1.90
55361--55394
17
2.0
17
88
0
50
26
5
5
61
1.42
57324--57458
63
2.1
63
97
0
252
41
12
13
32
1.82
57450--57505
23
2.4
23
96
0
103
39
16
10
33
1.83
58341--58366
10
2.6
10
100
0
52
23
30
11
34
1.90
59162--59195
17
2.0
17
88
0
50
26
5
5
61
1.42
60129--60192
21
3.1
21
75
4
76
17
17
26
39
1.91
60286--60325
18
2.2
18
86
8
55
35
40
22
2
1.68
60820--60850
6
5.2
6
100
0
62
0
16
48
35
1.46
61006--61141
21
6.6
21
74
6
143
33
25
19
22
1.97
60983--61100
62
1.9
62
96
3
220
34
25
19
20
1.96
61027--61161
41
3.3
41
92
4
236
36
22
20
20
1.95
61828--61969
60
2.4
60
83
7
164
36
13
16
33
1.87
64060--64154
41
2.3
41
92
5
156
41
10
15
32
1.82
69479--69616
63
2.2
63
100
0
276
40
13
12
34
1.81
69561--69694
41
3.2
41
97
1
250
41
11
15
31
1.84
70237--70275
2
19.5
2
100
0
78
51
0
0
48
1.00
73252--73291
20
2.0
21
85
5
55
35
0
0
65
0.93
73262--73303
16
2.5
17
84
3
50
33
0
2
64
1.07
75740--75774
13
2.6
14
90
4
54
54
5
0
40
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
75994--76028
14
2.4
14
90
4
52
31
0
2
65
1.07
76066--77077
508
2.0
507
93
0
1731
33
14
18
33
1.91
85124--85196
22
3.3
22
86
1
101
32
19
20
27
1.97

Tables:   1

The End!