Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001657.1 Hibiscus syriacus cultivar Beakdansim tig00003313_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106433

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2927--3016
32
2.9
31
79
12
112
18
28
27
24
1.98
2911--2996
31
2.7
31
83
5
102
16
30
27
25
1.97
2910--3044
63
2.1
64
81
9
161
18
26
26
28
1.98
3877--3910
17
2.0
17
88
0
50
20
0
5
73
1.04
6029--6061
2
16.5
2
100
0
66
48
0
0
51
1.00
11874--11924
26
2.0
26
84
7
68
37
1
0
60
1.08
12852--12891
18
2.2
18
86
8
55
27
2
2
67
1.16
16282--16326
2
22.5
2
100
0
90
48
0
0
51
1.00
17180--17391
66
3.2
67
82
6
265
38
14
14
32
1.86
20791--20825
18
1.9
18
88
0
52
28
17
0
54
1.43
27443--27492
21
2.4
21
83
12
68
22
10
20
48
1.79
27421--27498
34
2.3
35
84
6
97
19
12
19
48
1.80
30332--30401
27
2.6
26
72
17
63
60
4
1
34
1.25
30474--30553
2
41.0
2
95
5
146
50
0
0
50
1.00
35199--35226
14
2.0
14
100
0
56
64
0
0
35
0.94
41871--41927
2
28.5
2
100
0
114
50
0
0
49
1.00
46906--46932
2
13.5
2
100
0
54
51
0
0
48
1.00
53840--53886
18
2.5
19
82
6
60
65
0
0
34
0.93
53916--53943
14
2.0
14
100
0
56
57
0
0
42
0.99
56082--56130
21
2.3
21
78
3
53
24
4
4
67
1.26
56200--56238
21
1.9
21
89
5
62
43
25
10
20
1.83
60412--60480
27
2.6
25
80
11
75
65
1
1
31
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60552--60586
2
17.5
2
100
0
70
48
0
0
51
1.00
62779--62810
2
17.0
2
87
12
50
50
0
0
50
1.00
73095--73295
67
2.8
70
84
10
232
27
1
12
58
1.43
81620--81650
16
1.9
16
93
0
53
64
3
19
12
1.41
83044--83207
75
2.2
74
86
3
238
30
2
10
56
1.47
83066--83262
64
2.8
68
85
10
233
27
1
11
59
1.41
83158--83290
64
2.1
64
81
5
153
27
1
15
56
1.48
83855--83904
25
2.2
22
86
13
66
22
4
0
74
0.99
83939--83980
18
2.3
19
87
4
59
30
2
0
66
1.04
86619--86662
9
4.8
10
76
18
51
63
0
0
36
0.95
86619--86678
18
3.2
19
81
9
61
65
3
1
30
1.19
87648--87706
15
3.7
16
74
14
50
57
0
1
40
1.09
88870--88932
27
2.2
30
77
11
69
65
1
3
30
1.18
88888--88925
18
2.1
18
90
0
58
65
0
5
28
1.14
88879--88947
27
2.5
26
79
11
68
65
1
2
30
1.16
94325--94380
28
2.1
26
83
6
67
62
0
0
37
0.95
96558--96613
28
2.1
26
83
6
67
62
0
0
37
0.95
98792--98847
28
2.1
26
83
6
67
62
0
0
37
0.95
103267--103322
28
2.1
26
83
6
67
62
0
0
37
0.95

Tables:   1

The End!