genome.fa.s1658.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001658.1 Hibiscus syriacus cultivar Beakdansim tig00003316_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88913

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78--136	9	6.9	9	75	9	61	32	1	1	64	1.13
82--136	17	3.2	17	87	5	67	32	1	1	63	1.15
870--995	43	2.9	42	82	9	139	28	18	29	23	1.98
5635--5696	26	2.4	25	76	10	61	66	4	14	14	1.41
5659--5734	40	1.9	40	86	5	109	65	5	14	14	1.43
10552--10598	21	2.3	21	85	3	60	10	12	31	44	1.77
12541--12623	32	2.6	32	88	3	123	36	15	18	30	1.92
14380--14507	36	3.5	36	79	12	129	32	1	1	64	1.13
14433--14520	36	2.4	36	87	7	117	31	2	0	65	1.05
14468--14595	17	7.6	16	71	16	80	21	0	0	76	0.88
14520--14596	9	8.9	9	79	13	72	18	0	1	80	0.78
14512--14609	11	8.5	12	72	17	66	19	2	1	77	0.93
14512--14579	13	5.3	13	78	5	68	17	0	1	80	0.78
14520--14596	18	4.4	18	82	8	88	18	0	1	80	0.78
14450--14600	44	3.4	43	75	19	107	24	1	0	72	0.99
14511--14609	39	2.4	41	80	11	114	19	2	1	77	0.92
14520--14595	13	6.0	13	73	11	52	17	0	1	81	0.76
17759--17824	13	5.0	13	84	12	82	75	3	16	4	1.09
17759--17845	40	2.2	40	83	8	106	75	2	17	4	1.07
18963--19046	32	2.6	31	79	7	96	29	14	20	35	1.92
19622--19839	106	2.1	106	84	0	283	32	23	20	22	1.98
20207--20395	37	5.4	37	69	16	132	27	19	13	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20187--20421	102	2.3	102	91	0	380	31	19	12	37	1.88
20100--20272	87	2.0	87	91	0	283	33	17	11	36	1.86
20458--20693	36	6.7	36	76	11	202	26	20	13	40	1.89
20473--20659	102	1.8	102	82	6	245	27	20	12	39	1.89
20679--20773	39	2.6	38	86	8	133	43	22	8	26	1.81
21747--21791	22	2.0	23	83	12	58	28	2	0	68	1.01
21914--22028	2	60.5	2	75	19	59	37	1	0	60	1.13
21914--22035	44	2.7	46	84	7	178	36	1	0	61	1.12
22048--22201	9	16.7	9	65	18	50	20	7	0	72	1.08
22038--22127	25	3.8	24	74	16	80	17	5	0	76	0.97
22039--22112	38	1.9	38	83	8	96	17	4	0	78	0.90
22028--22113	19	4.2	20	70	19	63	17	4	0	77	0.93
22887--22918	2	16.5	2	93	6	57	50	0	0	50	1.00
22932--22993	26	2.5	26	89	5	101	43	3	8	45	1.49
22955--23152	36	5.5	35	85	8	238	42	2	9	45	1.49
22953--23142	72	2.6	72	85	11	262	42	2	10	45	1.51
24390--24434	18	2.6	17	86	6	56	20	4	6	68	1.29
24537--24568	3	10.7	3	100	0	64	31	0	0	68	0.90
26155--26180	2	13.0	2	100	0	52	50	0	0	50	1.00
26185--26223	18	2.0	21	85	14	57	56	5	0	38	1.22
26383--26463	39	2.1	38	95	2	144	54	2	3	39	1.32
28024--28077	26	2.1	26	86	10	76	59	9	0	31	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29078--29102	12	2.1	12	100	0	50	76	0	0	24	0.80
35963--36017	26	2.1	26	100	0	110	34	16	25	23	1.95
37640--37691	20	2.6	21	77	20	65	25	32	17	25	1.97
37680--37871	20	9.6	20	81	5	219	40	24	16	18	1.91
37713--37867	60	2.6	60	89	4	249	40	24	15	19	1.90
37976--38033	22	2.6	22	91	0	89	17	44	18	18	1.87
38440--38493	20	2.7	19	80	8	63	14	14	22	48	1.81
40672--40740	21	3.3	21	68	0	66	23	34	17	24	1.96
42624--42659	18	2.0	18	94	0	63	16	2	25	55	1.55
44038--44089	25	2.1	25	96	0	95	46	17	7	28	1.75
46813--46866	24	2.2	24	93	0	90	44	20	14	20	1.86
46813--46880	24	2.8	24	86	0	64	41	20	14	23	1.89
47019--47062	19	2.3	19	96	0	79	36	6	20	36	1.79
47623--47656	16	2.1	16	88	0	50	64	0	5	29	1.17
47836--47910	19	3.9	19	92	1	114	32	9	21	37	1.85
47828--48086	20	13.0	20	76	11	124	23	14	22	39	1.91
47875--48086	20	10.6	19	77	11	151	21	15	23	40	1.91
47827--48086	60	4.3	60	76	9	219	23	14	22	39	1.91
47894--48086	40	4.8	40	77	9	189	20	15	23	40	1.91
48078--48123	21	2.2	21	96	0	83	41	17	21	19	1.90
48157--48208	20	2.6	20	93	0	86	19	13	32	34	1.90
49506--49553	19	2.6	19	80	3	53	62	4	2	31	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50198--50236	20	2.0	20	100	0	78	58	5	0	35	1.20
52876--52900	13	1.9	13	100	0	50	20	0	0	80	0.72
54044--54115	20	3.6	20	94	0	126	34	25	13	26	1.93
54749--54773	11	2.3	11	100	0	50	32	0	16	52	1.44
55291--55848	285	2.0	284	99	0	1107	29	26	19	23	1.98
58970--59005	17	2.1	17	89	0	54	11	2	2	83	0.86
70672--70709	20	1.9	19	89	5	58	39	13	28	18	1.88
78194--78277	12	7.0	12	72	10	64	21	11	16	50	1.77
78157--78277	24	5.0	24	79	9	131	21	13	15	49	1.78
80290--80459	18	9.4	18	88	0	259	28	30	22	18	1.97
81374--81425	19	2.7	19	100	0	104	23	30	17	28	1.97
81311--81469	83	1.9	82	81	6	187	25	25	17	32	1.97
82385--82429	2	22.5	2	100	0	90	48	0	0	51	1.00
85529--85563	18	1.9	18	88	0	52	28	17	14	40	1.88

Tables:   1

The End!