genome.fa.s1659.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001659.1 Hibiscus syriacus cultivar Beakdansim tig00003317_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106215

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11660--11709	21	2.4	21	93	0	82	32	32	20	16	1.94
11705--11764	19	2.9	19	72	13	57	23	21	18	36	1.95
11699--11773	23	3.5	22	70	15	68	24	22	18	34	1.96
11699--12030	63	5.3	63	75	10	279	22	18	22	35	1.96
11705--12002	105	2.9	102	79	8	341	22	18	23	35	1.95
11705--12027	42	7.7	42	81	8	315	21	18	22	36	1.95
16145--16204	3	20.0	3	96	0	111	33	1	0	65	1.03
16372--16420	18	2.7	18	96	0	89	24	32	26	16	1.96
16680--16723	21	2.0	23	82	8	56	36	18	2	43	1.63
20703--20740	18	2.1	18	95	0	67	31	34	18	15	1.92
21001--21044	21	2.0	23	86	8	65	34	20	2	43	1.64
24404--24580	88	2.0	88	95	3	320	29	23	14	32	1.94
24808--24851	3	14.7	3	86	9	63	31	2	2	63	1.19
26950--26980	16	1.9	16	100	0	62	32	6	3	58	1.40
28056--28116	30	2.0	30	96	0	113	11	16	14	57	1.65
31140--31177	11	3.4	11	89	7	58	71	10	13	5	1.30
32355--32404	4	13.0	4	91	8	86	50	26	0	24	1.50
32495--32759	30	8.1	30	66	19	138	32	11	12	43	1.79
32512--32836	67	4.9	67	94	2	534	30	12	11	44	1.78
32512--32878	134	2.8	133	90	4	539	29	13	12	44	1.80
32512--32878	67	5.5	64	91	3	443	29	13	12	44	1.80
32857--32928	29	2.5	29	84	11	94	26	13	13	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32889--32945	30	1.9	29	85	3	78	28	14	12	45	1.80
32918--33040	61	2.0	61	90	3	194	31	13	13	41	1.83
33034--33100	28	2.4	27	85	7	82	35	7	16	40	1.77
32884--33174	149	1.9	154	83	5	387	30	12	13	43	1.81
33051--33242	65	3.0	62	77	4	177	31	13	12	42	1.81
32972--33155	88	2.1	85	79	10	206	33	11	13	42	1.79
33066--33192	64	2.0	65	84	1	166	29	12	12	44	1.79
33364--33438	31	2.4	31	82	12	84	29	17	12	41	1.85
33668--33763	28	3.3	28	76	15	97	20	14	17	46	1.83
34188--34231	3	14.7	3	86	9	63	31	2	2	63	1.19
36332--36362	16	1.9	16	100	0	62	32	6	3	58	1.40
46451--46588	37	3.8	36	84	6	172	29	14	13	42	1.84
46485--46585	34	2.9	35	91	8	161	27	14	13	43	1.84
47022--47477	105	4.3	106	90	1	637	21	19	26	33	1.97
47022--47477	211	2.1	212	87	2	657	21	19	26	33	1.97
48081--48534	65	6.7	65	72	11	257	38	11	19	30	1.87
48213--48469	36	7.3	35	75	11	179	39	13	18	29	1.88
48165--48534	138	2.7	138	84	0	463	38	11	19	30	1.88
48355--48475	36	3.3	36	91	2	197	40	12	20	26	1.88
48897--48932	18	2.0	18	88	0	54	41	30	8	19	1.81
49349--49397	22	2.2	22	88	0	71	28	12	24	34	1.91
50053--50129	8	10.1	7	77	18	66	0	14	6	79	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50047--50092	16	2.8	17	80	6	51	0	17	8	73	1.07
50080--50113	17	1.9	18	88	5	52	0	5	5	88	0.64
51889--51958	35	2.0	35	100	0	140	17	34	17	31	1.93
53286--53343	2	29.0	2	100	0	116	50	0	0	50	1.00
53770--53796	2	13.5	2	100	0	54	51	0	0	48	1.00
54255--54392	37	3.8	36	84	6	163	30	13	13	42	1.84
54291--54389	34	2.8	34	92	7	155	29	13	14	43	1.83
54452--54496	18	2.5	18	92	0	72	13	8	46	31	1.74
55992--56025	17	1.9	18	94	5	61	64	2	2	29	1.22
57611--58586	105	9.4	105	95	2	1731	22	18	25	33	1.96
58781--58809	1	29.0	1	100	0	58	0	0	0	100	0.00
59395--59419	1	25.0	1	100	0	50	0	0	0	100	0.00
70210--70243	17	1.9	18	94	5	61	64	2	2	29	1.22
72232--72289	30	2.0	27	83	9	71	41	1	1	55	1.20
72346--72403	29	2.0	29	83	6	73	46	3	0	50	1.18
73651--73675	13	1.9	13	100	0	50	76	0	8	16	1.02
73801--73848	13	3.8	12	81	8	51	68	0	2	29	1.01
73801--73848	12	3.8	12	79	17	53	68	0	2	29	1.01
74080--74161	26	3.2	26	94	0	137	31	7	19	41	1.79
76895--76968	21	3.4	21	75	7	58	29	18	24	27	1.98
84217--84258	21	2.0	21	95	0	75	28	16	9	45	1.79
84516--84588	36	2.0	36	100	0	146	32	16	26	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85825--85852	14	2.0	14	100	0	56	50	7	28	14	1.69
85881--85917	20	1.9	19	89	10	58	45	10	21	21	1.82
95114--95173	28	2.1	30	87	12	90	46	0	0	53	1.00
95277--95327	23	2.2	23	82	0	57	45	1	1	50	1.24
97760--97829	32	2.2	32	100	0	140	30	17	14	38	1.89

Tables:   1

The End!