Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000166.1 Hibiscus syriacus cultivar Beakdansim tig00000292_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87627

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6800--6846
21
2.2
21
100
0
94
48
8
19
23
1.75
7179--7219
19
2.2
19
86
8
57
19
2
0
78
0.87
9413--9455
22
2.0
22
90
0
68
11
25
46
16
1.80
9424--9462
17
2.3
17
100
0
78
10
25
46
17
1.80
16658--16716
26
2.3
26
79
5
66
13
27
44
15
1.84
16734--16783
20
2.4
22
83
12
70
32
24
26
18
1.97
22588--22616
2
14.5
2
100
0
58
48
0
0
51
1.00
23843--23886
17
2.8
16
86
10
63
54
2
0
43
1.12
31653--31713
23
2.7
23
89
0
95
26
27
26
19
1.99
31729--31946
103
2.1
103
99
0
427
36
22
13
26
1.92
36715--36783
23
3.0
23
84
0
57
31
26
21
20
1.98
36799--37016
103
2.1
103
96
0
400
37
22
12
26
1.91
38658--38716
23
2.6
23
80
0
55
35
25
18
20
1.95
38666--38722
23
2.5
23
82
0
69
29
24
22
22
1.99
38742--38959
103
2.1
103
97
0
409
38
23
13
25
1.91
40553--40599
23
2.1
23
84
7
62
29
27
8
34
1.87
49080--49125
24
1.9
24
90
0
74
54
2
4
39
1.32
53143--53199
22
2.5
23
81
15
66
59
7
5
28
1.45
58440--58564
64
1.9
65
81
1
153
30
17
22
29
1.97
58549--58595
19
2.5
19
89
6
69
23
21
27
27
1.99
61852--61880
14
2.0
15
93
6
51
20
3
0
75
0.94
62686--62738
14
3.8
14
80
7
54
30
5
3
60
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62696--62734
15
2.7
14
88
4
51
30
2
5
61
1.31
75249--75315
22
3.0
23
70
16
70
28
31
25
14
1.95
76876--76923
18
2.6
19
83
6
55
45
22
29
2
1.64
76891--76926
18
1.9
19
94
5
65
44
25
30
0
1.54
77592--77623
16
2.0
16
100
0
64
31
12
6
50
1.65
78772--78815
23
1.9
23
86
9
63
59
0
0
40
0.98

Tables:   1

The End!