genome.fa.s1660.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001660.1 Hibiscus syriacus cultivar Beakdansim tig00003318_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100866

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1460--1492	16	2.0	17	88	5	50	60	3	0	36	1.12
1525--1586	28	2.3	27	85	2	88	56	4	12	25	1.56
5821--5850	14	2.1	15	93	6	53	70	0	0	30	0.88
6291--6375	34	2.5	34	86	0	125	63	2	4	29	1.27
6290--6375	4	20.5	4	74	9	73	62	2	4	30	1.28
7392--7448	6	9.5	6	90	0	87	3	15	45	35	1.64
7392--7448	18	3.2	18	94	0	96	3	15	45	35	1.64
7538--7652	21	5.5	21	90	4	178	27	23	21	26	1.99
7625--7700	21	3.6	21	72	10	66	25	25	22	27	2.00
7728--7850	21	5.9	21	84	9	153	23	21	24	30	1.99
10493--10564	17	4.2	17	80	1	72	40	13	5	40	1.68
16570--16620	17	3.0	17	75	11	50	39	13	5	41	1.69
23701--23838	15	9.2	15	84	12	169	44	0	2	52	1.18
23822--23897	31	2.4	32	93	4	129	38	0	10	51	1.37
23843--23991	78	1.9	80	92	2	257	32	0	14	52	1.42
23954--24049	22	4.0	22	75	21	93	36	0	11	52	1.38
23976--24180	31	6.7	31	71	25	170	35	0	11	52	1.38
23926--24113	53	3.4	54	90	6	290	36	0	11	52	1.37
23948--24354	27	16.1	26	65	27	129	33	0	13	53	1.40
24158--24197	20	2.0	21	90	5	64	35	0	15	50	1.44
24128--24366	79	3.1	78	78	11	285	32	0	13	53	1.40
24179--24260	31	2.8	29	81	9	96	29	0	13	57	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24229--24350	25	5.2	22	73	17	93	30	0	14	54	1.40
23773--24354	177	3.2	176	72	15	475	34	0	12	53	1.39
24287--24361	22	3.0	26	79	16	104	37	0	9	53	1.33
25477--25559	31	2.8	31	82	14	113	16	14	9	59	1.61
25679--25745	30	2.2	31	91	2	109	29	7	11	50	1.66
26787--27276	244	2.0	242	97	2	921	29	17	20	32	1.96
28511--28642	59	2.2	59	81	6	151	36	18	15	29	1.92
34856--34890	18	1.9	18	94	0	61	25	22	37	14	1.92
36068--36139	31	2.4	31	83	2	92	29	6	13	50	1.68
36217--36270	27	2.1	25	82	6	63	55	0	1	42	1.10
38995--39069	5	13.8	5	76	17	53	77	2	6	13	1.07
39041--39134	40	2.4	39	80	8	127	70	1	5	23	1.14
39177--39219	18	2.4	18	92	0	68	72	0	6	20	1.08
39715--39744	12	2.5	12	88	0	51	66	3	23	6	1.30
40351--40667	156	2.0	156	86	2	449	26	20	18	33	1.96
40512--40946	200	2.2	200	86	0	602	27	21	18	33	1.96
41009--41305	86	3.5	85	87	2	398	21	22	24	31	1.98
41011--41320	172	1.8	172	86	2	453	21	22	24	31	1.98
45326--45392	33	2.0	33	100	0	134	40	11	17	29	1.86
52705--52742	3	12.7	3	100	0	76	65	0	0	34	0.93
52992--53881	114	7.9	113	85	8	1032	29	18	13	39	1.88
52992--53881	224	3.9	225	89	4	1122	29	18	13	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54281--54335	22	2.5	22	84	0	74	38	12	14	34	1.84
54723--54798	40	1.9	40	94	0	134	32	21	10	35	1.87
59299--59328	11	2.7	11	94	0	51	0	13	0	86	0.57
62582--62635	14	3.8	14	85	2	63	51	9	14	24	1.71
66400--66461	3	20.7	3	93	0	97	64	0	3	32	1.09
72581--72622	21	2.0	21	95	0	75	21	14	35	28	1.92
74360--74403	22	2.0	22	81	4	52	45	0	4	50	1.22
81228--81267	20	2.0	20	100	0	80	55	0	25	20	1.44
83220--83259	20	2.0	20	95	0	71	42	25	7	25	1.80
86507--86533	4	6.8	4	100	0	54	25	0	0	74	0.83
86529--86573	3	14.7	3	95	4	81	33	0	0	66	0.92
91590--91632	13	3.2	13	81	12	50	60	11	0	27	1.31
91591--91632	15	2.9	15	82	6	52	61	9	0	28	1.27
93394--93434	17	2.3	18	87	4	57	48	9	7	34	1.64
98183--98222	18	2.2	19	95	4	73	35	22	7	35	1.82

Tables:   1

The End!