Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001662.1 Hibiscus syriacus cultivar Beakdansim tig00003326_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77000

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
324--462
59
2.3
58
80
8
163
33
12
20
33
1.90
1358--1501
2
78.0
2
73
17
98
57
0
0
41
1.03
1358--1499
45
3.2
45
77
10
130
57
0
0
41
1.03
11164--11205
20
2.0
20
86
4
57
23
9
7
59
1.53
14249--14294
2
22.5
2
95
4
83
47
2
0
50
1.13
19940--20075
42
3.2
42
72
12
123
30
13
16
38
1.88
19950--20143
86
2.3
85
84
5
259
30
14
15
39
1.87
19950--20178
85
2.7
86
81
8
236
30
14
15
39
1.88
21778--21851
30
2.4
30
93
2
121
54
8
9
28
1.61
27949--28389
41
10.9
41
75
8
305
37
17
16
29
1.91
28020--28432
161
2.5
163
84
4
514
38
17
15
28
1.90
27946--28432
82
6.0
82
79
5
463
37
17
15
29
1.91
28952--28980
2
14.5
2
100
0
58
48
0
0
51
1.00
29487--30006
4
130.0
4
100
0
1040
25
0
25
50
1.50
30004--31190
4
296.8
4
100
0
2374
25
0
49
25
1.50
31751--31806
21
2.7
21
82
0
67
44
28
0
26
1.54
31759--31815
7
8.3
7
80
3
62
42
29
0
28
1.56
36704--36749
21
2.1
22
88
4
67
26
32
23
17
1.97
36813--36854
21
2.0
21
86
9
59
52
16
0
30
1.44
37489--37613
31
4.0
31
75
2
106
32
20
17
28
1.96
37505--37611
31
3.4
31
81
11
112
33
18
17
29
1.94
38646--38670
12
2.1
12
100
0
50
48
28
8
16
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40542--40572
8
3.9
8
95
0
53
29
0
19
51
1.47
42672--42710
20
2.0
20
84
0
51
23
7
23
46
1.78
42907--42944
20
1.9
20
88
0
58
13
26
36
23
1.91
52874--52909
18
1.9
19
88
5
56
66
0
2
30
1.06
57076--57127
20
2.6
19
76
8
59
30
25
17
26
1.97
57684--57742
22
2.7
22
86
2
93
28
11
28
30
1.92
57772--57887
20
5.8
20
68
17
71
24
17
24
34
1.96
58915--58969
23
2.4
23
87
0
74
54
14
16
14
1.71
60033--60073
20
2.0
20
86
9
57
48
0
0
51
1.00
60031--60080
22
2.4
21
83
6
66
48
0
0
52
1.00
69967--70047
40
2.1
39
90
2
126
55
11
13
19
1.68
70948--71134
71
2.6
71
91
1
286
40
15
19
25
1.90
72542--72586
21
2.1
21
91
0
72
51
0
6
42
1.28
73529--73605
11
6.2
13
79
20
76
61
0
0
38
0.96
73535--73588
14
4.1
14
81
18
71
64
0
0
35
0.94
73529--73594
25
2.6
25
100
0
132
63
0
0
36
0.95

Tables:   1

The End!