genome.fa.s1665.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001665.1 Hibiscus syriacus cultivar Beakdansim tig00003333_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94311

Tables:   1   

This is table  1  of  1  ( 88 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1761--1796	18	2.0	18	94	0	63	55	22	2	19	1.56
3514--3592	20	3.9	20	86	8	115	26	18	34	20	1.96
3511--3592	41	2.0	41	90	4	130	26	18	35	19	1.95
3725--3761	4	9.8	4	88	11	60	75	0	0	24	0.80
3729--3757	15	1.9	15	100	0	58	75	0	0	24	0.80
3872--3966	21	4.5	22	70	12	74	35	31	10	22	1.88
3872--3966	42	2.2	44	80	10	126	35	31	10	22	1.88
3990--4030	21	2.0	21	95	0	73	34	39	14	12	1.84
5683--5739	20	2.8	20	91	0	87	47	19	17	15	1.83
5683--5746	20	3.2	20	88	0	74	48	18	15	17	1.81
6119--6169	22	2.3	22	89	0	75	17	17	43	21	1.88
6273--6310	20	2.0	20	89	5	60	47	13	13	26	1.79
6281--6323	19	2.2	20	87	4	61	41	13	16	27	1.86
6317--6367	20	2.5	20	83	0	66	21	9	21	47	1.79
7077--7390	54	5.9	54	89	2	472	36	16	13	33	1.88
13447--13870	54	7.9	54	88	1	609	35	16	14	33	1.89
13447--13870	161	2.6	160	90	1	632	35	16	14	33	1.89
17386--17429	2	22.0	2	100	0	88	50	0	0	50	1.00
19592--19752	30	5.4	30	77	4	119	58	10	14	16	1.63
21420--21596	31	5.3	31	68	17	122	24	12	13	49	1.76
21451--21643	37	5.5	37	65	19	137	25	13	13	47	1.80
21402--21739	68	5.0	68	85	6	483	27	12	12	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25918--25955	10	3.9	10	86	6	60	68	13	10	7	1.39
28096--28130	18	1.9	18	94	0	61	54	25	2	17	1.57
28190--28459	140	1.9	140	96	0	504	29	12	14	42	1.83
28430--28639	20	10.9	20	78	9	220	31	20	18	29	1.97
28428--28637	60	3.6	59	82	8	254	31	20	18	29	1.96
28682--28735	20	2.7	20	82	0	63	11	16	25	46	1.80
28838--28893	29	2.0	28	85	3	76	48	16	0	35	1.46
28838--28895	14	4.2	13	77	14	53	46	15	0	37	1.46
30308--30400	42	2.2	42	80	3	107	22	17	39	20	1.92
30886--30930	20	2.4	19	85	7	56	42	24	17	15	1.88
30992--31042	20	2.5	20	90	0	84	15	19	25	39	1.91
31492--31535	22	2.0	22	100	0	88	27	9	9	54	1.62
32647--32687	20	2.0	20	95	0	73	58	17	14	9	1.62
32654--32712	20	3.0	20	84	0	64	45	23	13	16	1.83
32685--32722	20	1.9	20	88	0	58	34	23	18	23	1.96
33128--33184	22	2.6	22	85	0	87	17	19	42	21	1.90
33349--33462	20	5.7	20	84	0	138	27	21	23	28	1.99
33349--33486	60	2.3	60	78	2	152	27	21	21	29	1.98
34600--34626	6	4.5	6	100	0	54	55	0	0	44	0.99
34734--34773	8	4.9	8	84	6	53	80	0	5	15	0.88
34739--34771	9	3.9	9	88	11	52	81	0	6	12	0.85
34873--34962	44	2.0	44	82	0	108	68	4	6	20	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34873--34962	23	4.1	21	77	18	78	68	4	6	20	1.29
34900--34963	21	3.0	21	72	17	58	68	3	10	17	1.31
36289--36321	11	2.9	12	86	13	52	81	0	0	18	0.68
36284--36321	12	3.5	11	86	10	51	78	0	0	21	0.74
37456--37508	21	2.5	21	75	6	63	20	24	18	35	1.95
37498--37549	21	2.5	21	81	3	61	40	17	21	21	1.91
37559--37625	21	3.2	21	78	4	73	22	22	16	38	1.92
37629--37714	20	4.2	21	82	7	106	43	17	19	19	1.89
38258--38317	20	3.0	20	82	4	86	48	20	20	11	1.80
38258--38328	19	3.7	19	84	1	88	47	22	18	11	1.80
38329--38416	33	2.6	33	92	1	140	12	23	21	42	1.87
38360--38417	14	3.3	19	70	25	63	12	24	25	37	1.90
40135--40512	94	4.1	94	92	3	597	21	12	18	47	1.81
40584--40609	12	2.2	12	100	0	52	0	7	19	73	1.07
41100--41166	21	3.2	21	64	6	55	23	35	19	20	1.95
41078--41166	42	2.1	42	83	8	110	23	35	19	21	1.95
41746--41850	20	5.2	20	95	0	165	26	20	28	24	1.99
41884--41935	20	2.5	21	87	3	70	21	23	17	38	1.93
41925--41986	21	3.0	20	79	9	70	33	17	27	20	1.96
42130--42245	3	38.3	3	94	1	205	63	0	0	34	1.06
43270--43525	100	2.5	103	80	7	304	23	18	23	34	1.96
47432--47464	11	2.9	12	86	13	52	81	0	0	18	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47427--47464	12	3.5	11	86	10	51	78	0	0	21	0.74
48421--48476	3	18.7	3	85	7	78	60	1	1	35	1.17
50437--50484	20	2.4	20	82	0	60	16	16	20	45	1.85
51407--51439	16	2.1	16	94	0	57	9	6	24	60	1.49
51948--52017	36	1.9	37	82	8	90	47	1	2	48	1.25
52364--52472	48	2.3	47	83	9	132	47	6	7	38	1.57
55396--55476	20	4.3	20	74	19	84	33	17	3	45	1.66
58007--58090	30	2.8	31	89	5	127	25	9	5	59	1.51
59155--59181	8	3.4	8	100	0	54	62	0	11	25	1.28
60942--60988	19	2.6	19	83	12	64	36	0	2	61	1.08
64276--64367	40	2.3	41	86	1	123	33	19	17	29	1.95
67396--67429	2	17.0	2	100	0	68	50	0	0	50	1.00
68223--68281	21	2.8	21	84	0	73	18	5	20	55	1.61
68485--68706	44	5.1	43	83	3	230	28	22	19	29	1.98
68489--68679	87	2.2	86	83	5	242	30	23	20	25	1.98
68489--68707	87	2.5	87	81	4	219	29	22	19	28	1.98
70690--70753	23	2.8	23	92	0	101	29	26	25	18	1.98
72328--72370	21	2.0	21	81	0	50	13	25	30	30	1.94
75926--75981	23	2.4	23	87	0	76	26	21	28	23	1.99
77591--77633	21	2.0	21	81	0	50	13	25	30	30	1.94
78312--78427	48	2.6	43	81	10	110	22	40	6	30	1.80
78312--78405	48	2.0	48	91	0	152	22	43	6	27	1.77

Tables:   1

The End!