genome.fa.s1666.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001666.1 Hibiscus syriacus cultivar Beakdansim tig00003335_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99387

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5479--5530	17	3.1	17	72	8	52	42	9	11	36	1.74
7791--7861	29	2.5	29	90	2	117	32	9	19	38	1.85
9497--9570	23	3.2	23	62	24	55	32	18	8	40	1.80
9499--9612	47	2.5	46	88	5	162	32	19	8	39	1.82
9502--9626	47	2.9	41	81	12	121	32	20	8	38	1.83
11034--11096	29	2.2	29	85	5	83	31	23	4	39	1.76
16071--16110	20	2.0	20	85	0	53	40	20	17	22	1.92
16566--16677	47	2.5	44	86	5	145	33	20	7	38	1.80
21256--21713	49	9.4	49	79	7	360	32	14	26	26	1.95
40254--40858	81	7.5	81	88	0	852	28	23	11	36	1.90
40821--41187	68	5.4	68	88	2	524	31	23	13	31	1.93
41313--41570	55	4.7	55	84	6	310	32	18	12	36	1.89
41309--41566	110	2.4	109	85	4	351	32	17	13	36	1.89
46273--46317	23	2.0	23	86	8	65	53	8	6	31	1.58
47210--47250	21	1.9	22	90	5	66	36	17	19	26	1.94
53092--53120	15	1.9	15	100	0	58	41	17	0	41	1.49
53092--53125	15	2.4	14	90	9	52	38	20	0	41	1.53
70246--70352	23	4.7	23	78	6	103	23	20	25	30	1.98
71707--71754	25	1.9	25	91	8	80	68	4	12	14	1.34
72792--72821	16	1.9	15	93	6	51	0	16	0	83	0.65
78024--78070	24	2.0	24	86	0	67	68	4	12	14	1.36
83229--83401	89	1.9	88	94	2	301	45	6	10	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84039--84090	2	25.5	2	96	3	95	48	0	1	50	1.12
93283--93474	40	4.7	41	79	2	181	32	19	15	32	1.93
97246--97487	42	5.8	42	76	6	231	24	25	18	31	1.98

Tables:   1

The End!