Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001667.1 Hibiscus syriacus cultivar Beakdansim tig00003339_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109801

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3654--3714
24
2.5
24
91
0
104
29
26
21
22
1.99
6795--6841
17
2.8
17
81
12
69
65
8
8
17
1.44
6777--6841
34
1.9
34
87
0
94
63
7
7
21
1.47
6875--6965
34
2.6
35
73
22
84
56
7
21
14
1.63
12250--12282
17
1.9
17
88
11
50
45
9
30
15
1.77
12545--13221
54
12.6
54
88
0
946
32
18
20
29
1.96
18480--19266
54
14.6
54
85
2
972
32
16
18
32
1.93
22624--22660
13
3.0
12
88
7
56
56
18
0
24
1.41
26214--26276
23
2.7
23
82
0
81
17
25
25
31
1.97
28373--28415
19
2.3
19
84
8
52
39
0
4
55
1.20
29999--30027
2
14.5
2
100
0
58
48
0
0
51
1.00
39046--39082
18
2.1
17
90
5
56
67
16
5
10
1.38
39394--39477
39
2.2
39
93
0
141
36
9
7
46
1.64
40703--40750
22
2.1
23
85
11
64
35
14
6
43
1.71
41979--42022
3
15.0
3
88
4
63
36
2
0
61
1.09
45613--45663
21
2.4
21
80
6
59
29
17
23
29
1.97
55424--55535
56
2.0
56
98
0
215
40
14
19
25
1.90
57769--57805
16
2.2
17
86
13
51
54
0
16
29
1.43
64446--64486
3
13.7
3
85
10
57
65
0
2
31
1.05
64446--64483
16
2.4
16
91
4
60
65
0
2
31
1.06
64643--64683
16
2.6
16
85
11
50
21
19
7
51
1.71
64654--64689
16
2.4
16
90
9
58
30
13
8
47
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65014--65049
16
2.4
16
90
9
58
30
13
8
47
1.73
65099--65139
17
2.4
17
100
0
82
19
19
4
56
1.60
65099--65145
17
2.5
19
80
20
62
19
21
4
55
1.60
65206--65573
123
3.0
123
86
3
528
26
17
15
39
1.90
65585--65742
73
2.2
73
88
0
235
39
12
15
32
1.84
66995--67101
45
2.3
46
87
7
157
32
18
19
28
1.96
67594--67638
2
22.5
2
100
0
90
51
0
0
48
1.00
69836--69918
23
3.7
22
75
8
78
25
22
24
27
2.00
73745--73784
21
1.9
21
89
0
62
37
7
2
52
1.43
78181--78241
5
12.6
5
74
19
58
3
16
0
80
0.84
78185--78236
25
2.1
25
92
3
88
3
15
0
80
0.85
78181--78244
24
2.8
23
82
15
80
3
15
0
81
0.82
82396--82435
2
20.0
2
100
0
80
50
0
0
50
1.00
84118--84167
19
2.8
17
81
9
55
12
22
28
38
1.89
84390--84428
20
2.0
20
89
0
60
33
10
12
43
1.77
88180--88220
21
2.0
21
90
0
64
29
17
24
29
1.97
92539--92617
21
3.9
20
85
6
97
31
29
13
25
1.94
92539--92618
40
1.9
39
90
5
106
31
28
15
25
1.95
98908--98942
18
1.9
18
100
0
70
65
0
17
17
1.27
99555--99612
21
2.8
21
74
10
64
25
10
22
41
1.85
105194--105237
22
2.0
22
86
13
63
29
4
15
50
1.64

Tables:   1

The End!