Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001668.1 Hibiscus syriacus cultivar Beakdansim tig00003340_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67474

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
737--789
12
4.5
11
77
15
52
50
11
18
18
1.76
725--789
24
2.7
24
78
0
76
53
10
16
18
1.71
722--840
48
2.5
48
81
9
127
48
13
15
21
1.80
734--840
12
8.9
12
66
15
51
47
14
16
21
1.82
777--840
24
2.7
24
97
0
119
45
15
15
23
1.84
775--854
24
3.3
23
81
13
99
47
15
16
21
1.82
3292--3333
12
3.4
12
75
18
50
21
21
40
16
1.91
3295--3336
13
3.3
13
75
18
52
21
21
40
16
1.91
5434--5486
12
4.5
11
77
13
52
52
13
16
16
1.74
5421--5487
24
2.8
24
76
15
75
53
13
14
17
1.72
5472--5527
24
2.3
24
76
11
62
50
14
14
21
1.78
15658--15696
20
2.0
20
94
0
69
15
17
35
30
1.91
16045--16348
134
2.3
134
84
3
405
30
15
19
34
1.93
17582--17700
12
10.8
11
72
22
74
5
15
0
78
0.91
17581--17703
38
3.4
37
72
18
114
4
16
0
78
0.91
17636--17703
23
3.0
21
75
12
64
4
17
0
77
0.92
18317--18380
23
2.8
23
80
0
74
23
15
28
32
1.95
21554--21596
20
2.2
20
91
0
68
25
11
23
39
1.88
21643--22258
188
3.3
188
87
2
855
37
16
18
26
1.92
26948--26984
18
2.1
18
94
0
65
29
27
8
35
1.85
29656--29757
3
34.7
3
90
3
163
64
0
0
34
1.00
29911--30561
119
5.5
119
94
3
1131
27
19
15
37
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29911--30561
233
2.8
233
92
4
1078
27
19
15
37
1.92
29893--30561
352
1.9
350
95
1
1223
27
20
14
37
1.92
31192--31500
52
5.9
52
95
2
559
37
23
15
23
1.93
32364--32400
19
1.9
19
94
0
65
51
13
5
29
1.63
32729--32760
14
2.3
14
94
0
55
0
3
6
90
0.53
43312--43347
15
2.6
15
87
12
51
61
8
5
25
1.46
43346--43380
18
1.9
18
88
11
54
60
2
5
31
1.35
45518--45612
3
32.7
3
87
4
133
66
0
1
32
0.99
47128--47174
14
3.6
13
81
16
53
61
2
2
34
1.20
47141--47169
14
2.1
14
100
0
58
65
0
0
34
0.93
49141--49173
9
3.7
9
92
8
50
63
0
3
33
1.10
52139--52177
18
2.2
18
100
0
78
30
17
15
35
1.91
52217--52344
60
2.1
60
84
7
161
31
12
20
35
1.90
57592--57724
20
6.6
20
72
6
115
30
19
20
30
1.97
57592--57724
61
2.2
61
84
0
176
30
19
20
30
1.97
57661--57748
41
2.1
41
85
8
117
32
20
17
29
1.95
63058--63134
21
3.8
20
77
3
73
29
22
23
24
1.99
63491--63645
65
2.4
65
83
2
186
28
21
20
30
1.98

Tables:   1

The End!