genome.fa.s1669.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001669.1 Hibiscus syriacus cultivar Beakdansim tig00003341_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  89791

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2945--2979	17	2.0	18	94	5	63	25	40	22	11	1.88
8637--8714	40	2.0	40	92	2	131	29	29	20	20	1.98
21394--21471	40	2.0	40	86	0	111	32	25	20	21	1.98
25205--25230	2	13.0	2	100	0	52	50	0	0	50	1.00
27878--27936	13	4.5	13	84	0	64	32	20	16	30	1.95
27914--28127	85	2.5	85	84	4	272	29	20	18	32	1.96
27914--28164	85	3.0	84	80	4	263	31	19	17	31	1.95
30604--30699	51	1.9	50	87	10	142	2	36	7	54	1.40
30600--30693	26	3.7	25	70	13	77	2	37	7	53	1.41
34528--34584	15	3.7	15	88	2	69	10	22	10	56	1.64
40043--40125	40	2.1	40	88	2	123	33	26	15	24	1.95
56015--56441	213	2.0	213	86	1	588	34	15	13	36	1.87
57883--57926	22	2.1	20	87	8	61	68	2	6	22	1.25
71235--71451	107	2.0	107	97	0	407	38	23	13	24	1.91
74320--74771	36	12.3	36	79	11	346	44	2	7	45	1.45
74717--74762	24	2.0	24	86	4	67	36	0	8	54	1.32
74364--74771	73	5.6	71	81	10	436	45	2	7	45	1.45
74770--74851	3	26.3	3	78	14	51	25	1	4	68	1.17
74770--74855	22	4.0	21	76	10	75	24	1	4	69	1.14
78832--79199	45	8.2	45	81	2	292	38	9	20	30	1.85
78858--79177	90	3.6	90	80	2	367	39	10	20	30	1.86
78871--79177	135	2.3	134	83	3	366	38	9	21	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81790--81992	103	2.0	102	87	6	295	34	15	17	32	1.91
83369--83860	85	5.8	83	81	5	511	34	18	18	28	1.94
86390--86441	24	2.2	24	82	0	59	50	17	11	21	1.77
86410--86528	24	5.0	24	86	6	152	41	19	16	22	1.90
86413--86546	24	5.6	24	84	5	146	43	18	14	23	1.87
88974--89022	15	3.1	15	82	5	62	24	24	34	16	1.95
89012--89052	18	2.3	18	100	0	82	9	21	51	17	1.74
88964--89025	8	7.5	8	77	14	56	24	24	33	17	1.96

Tables:   1

The End!