Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000167.1 Hibiscus syriacus cultivar Beakdansim tig00000293_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81704
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.32
Found at i:4267 original size:20 final size:17
Alignment explanation
Indices: 4231--4265 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
4221 TCTTATACTC
4231 ATCCAGCAAAGAAAAAA
1 ATCCAGCAAAGAAAAAA
4248 ATCCAGCAAAGAAAAAA
1 ATCCAGCAAAGAAAAAA
4265 A
1 A
4266 AAGAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.66, C:0.17, G:0.11, T:0.06
Consensus pattern (17 bp):
ATCCAGCAAAGAAAAAA
Found at i:4281 original size:16 final size:16
Alignment explanation
Indices: 4262--4337 Score: 57
Period size: 16 Copynumber: 4.8 Consensus size: 16
4252 AGCAAAGAAA
4262 AAAAAAGAAAAAAAGG
1 AAAAAAGAAAAAAAGG
* * *
4278 AAAAAA-AAATAGATG
1 AAAAAAGAAAAAAAGG
* *
4293 AAAAACG-AAAAATGAG
1 AAAAAAGAAAAAAAG-G
* *
4309 AAAAACGAAAAAAAAAG
1 AAAAAAG-AAAAAAAGG
4326 AAAAAAGAAAAA
1 AAAAAAGAAAAA
4338 GGGGAGAAAT
Statistics
Matches: 45, Mismatches: 11, Indels: 8
0.70 0.17 0.12
Matches are distributed among these distances:
15 14 0.31
16 19 0.42
17 7 0.16
18 5 0.11
ACGTcount: A:0.79, C:0.03, G:0.14, T:0.04
Consensus pattern (16 bp):
AAAAAAGAAAAAAAGG
Found at i:4296 original size:22 final size:20
Alignment explanation
Indices: 4259--4331 Score: 57
Period size: 19 Copynumber: 3.8 Consensus size: 20
4249 TCCAGCAAAG
*
4259 AAAAAAAAAGAAAAAAAGGA
1 AAAAAAAAAGAAAAAAACGA
*
4279 AAAAAAAATAGATGAAAAACG-
1 AAAAAAAA-AGA-AAAAAACGA
* *
4300 ---AAAAATGAGAAAAACG-
1 AAAAAAAAAGAAAAAAACGA
4316 AAAAAAAAAGAAAAAA
1 AAAAAAAAAGAAAAAA
4332 GAAAAAGGGG
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
16 8 0.19
17 2 0.05
18 5 0.12
19 11 0.26
20 8 0.19
21 3 0.07
22 6 0.14
ACGTcount: A:0.79, C:0.03, G:0.14, T:0.04
Consensus pattern (20 bp):
AAAAAAAAAGAAAAAAACGA
Found at i:4320 original size:17 final size:17
Alignment explanation
Indices: 4281--4337 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
4271 AAAAAGGAAA
4281 AAAAAATAGATGAAAAACG
1 AAAAAAT-GA-GAAAAACG
4300 -AAAAATGAGAAAAACG
1 AAAAAATGAGAAAAACG
** *
4316 AAAAAAAAAGAAAAAAG
1 AAAAAATGAGAAAAACG
4333 AAAAA
1 AAAAA
4338 GGGGAGAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
16 8 0.24
17 20 0.59
18 6 0.18
ACGTcount: A:0.77, C:0.04, G:0.14, T:0.05
Consensus pattern (17 bp):
AAAAAATGAGAAAAACG
Found at i:6629 original size:114 final size:114
Alignment explanation
Indices: 6422--6647 Score: 344
Period size: 114 Copynumber: 2.0 Consensus size: 114
6412 AAGTGCCATG
* *
6422 TGCTCATAGTAGAAATAAGAAGACCCAATAGCATCTTCTAGAAGTGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAAAAATAAGAAGACCCAATAGCATCTTCTAGAAATGTTCTTTGAGTTATCTGATC
* * * * *
6487 TAGTTTGGTATGAATCCCAAAACTAATCATTAGATTTGAAAGATGAATT
66 TAGTTCGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATT
* *
6536 TGCTCATAGTAAAAATAAGGAGACCCAATAGCATCTTCTGGAAATGTTCTTTGAGTTATCTGATC
1 TGCTCATAGTAAAAATAAGAAGACCCAATAGCATCTTCTAGAAATGTTCTTTGAGTTATCTGATC
* * *
6601 TGGTTCGGTAGGAACCCCAGAACCAATCATTGGAATTGAAAGATGAA
66 TAGTTCGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAA
6648 ATGCATGATC
Statistics
Matches: 100, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
114 100 1.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (114 bp):
TGCTCATAGTAAAAATAAGAAGACCCAATAGCATCTTCTAGAAATGTTCTTTGAGTTATCTGATC
TAGTTCGGTAGGAACCCCAAAACCAATCATTAGAATTGAAAGATGAATT
Found at i:6862 original size:31 final size:31
Alignment explanation
Indices: 6824--6886 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
6814 GCACATATAA
* * *
6824 AATCTGTCAACTTTGCAATTGATGAATTCAG
1 AATCTGTCAAATCTACAATTGATGAATTCAG
6855 AATCTGTCAAATCTACAATTGATGAATTCAG
1 AATCTGTCAAATCTACAATTGATGAATTCAG
6886 A
1 A
6887 CTACATCTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.37, C:0.16, G:0.14, T:0.33
Consensus pattern (31 bp):
AATCTGTCAAATCTACAATTGATGAATTCAG
Found at i:9334 original size:22 final size:22
Alignment explanation
Indices: 9309--9385 Score: 127
Period size: 22 Copynumber: 3.5 Consensus size: 22
9299 ATCTACATTC
*
9309 TTCAAAGATGATATATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
9331 TTCAAAGATGAAAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
9353 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
9375 TTCAAAGATGA
1 TTCAAAGATGA
9386 AAGCTTTATG
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 50 1.00
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:10211 original size:165 final size:166
Alignment explanation
Indices: 9900--10223 Score: 526
Period size: 165 Copynumber: 2.0 Consensus size: 166
9890 AAAATGAGCA
*
9900 TTATCTTCAGATTGGGTCATGTTACCCAATCAACATGTTATTTCAAAAAATAGGATGAGAAAACG
1 TTATCTTCAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAATA-GATGAGAAAACG
* ** *
9965 ATTTTCATAGTTTCTCATTTTATCTTTTCTAAAATGAAATTGTTGAAAAGTAAGAAAACGATTTT
65 ATTTCCATAGTTTCTCATTCAATCTTTTCTAAAATGAAATTGTTAAAAAGTAAGAAAACGATTTT
* *
10030 CTTAGTTTTTTTACTTAGTAAACTATTTCTAACAGCC
130 CATAGTTTTCTTACTTAGTAAACTATTTCTAACAGCC
* **
10067 TTATCTTGAGATTGGGGCATGTTACCCAATCAACATGTTATTTTGAAAAATA-ATGAGAAAACGA
1 TTATCTTCAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAATAGATGAGAAAACGA
10131 TTTCCATAGTTTCTCATTCAATCTTTTCTAAAAATGAAATTGTTAAAAAGTAAGAAAACGATTTT
66 TTTCCATAGTTTCTCATTCAATCTTTTCT-AAAATGAAATTGTTAAAAAGTAAGAAAACGATTTT
10196 CATAG-TTTCTTACTTAGTAAACTATTTC
130 CATAGTTTTCTTACTTAGTAAACTATTTC
10224 CCACATCTGT
Statistics
Matches: 146, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
165 60 0.41
166 38 0.26
167 48 0.33
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.39
Consensus pattern (166 bp):
TTATCTTCAGATTGGGGCATGTTACCCAATCAACATGTTATTTCAAAAAATAGATGAGAAAACGA
TTTCCATAGTTTCTCATTCAATCTTTTCTAAAATGAAATTGTTAAAAAGTAAGAAAACGATTTTC
ATAGTTTTCTTACTTAGTAAACTATTTCTAACAGCC
Found at i:10668 original size:76 final size:76
Alignment explanation
Indices: 10227--10634 Score: 766
Period size: 76 Copynumber: 5.4 Consensus size: 76
10217 CTATTTCCCA
10227 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-A
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
10291 AGCCTTCGGGT
66 AGCCTTAGGGT
10302 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTC-A
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
10366 AGCCTTAGGGT
66 AGCCTTAGGGT
10377 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
10442 AGCCTTAGGGT
66 AGCCTTAGGGT
*
10453 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCAGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
10518 AACCTTAGGGT
66 AGCCTTAGGGT
*
10529 CATCTGTAAGTCTTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
10594 AGCCTTAGGGT
66 AGCCTTAGGGT
10605 CATCTGTAAGTCCTGCAGTGCATGATGTTT
1 CATCTGTAAGTCCTGCAGTGCATGATGTTT
10635 TTAAGACCTC
Statistics
Matches: 325, Mismatches: 7, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
75 137 0.42
76 188 0.58
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.35
Consensus pattern (76 bp):
CATCTGTAAGTCCTGCAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AGCCTTAGGGT
Found at i:10893 original size:3 final size:3
Alignment explanation
Indices: 10787--10882 Score: 106
Period size: 3 Copynumber: 32.0 Consensus size: 3
10777 AATTTTTCGT
* * *
10787 TTA TTA TTA TTA -AA TTA TTA TTA TAA ATA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
** *
10834 TTA AAA TTA TTA TTA TTA TTAA ATA TTA TTA TATA TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA T-TA TTA TTA TTA TTA
10880 TTA
1 TTA
10883 AATAATTATT
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
2 3 0.04
3 69 0.90
4 5 0.06
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:12105 original size:20 final size:21
Alignment explanation
Indices: 12058--12109 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
12048 TAATATTTTG
* *
12058 AATTATTATCTTTATTTTTAAT
1 AATT-TTATATTTAGTTTTAAT
12080 AA-TTTATATTTAGTTTT-AT
1 AATTTTATATTTAGTTTTAAT
12099 AATTTTA-ATTT
1 AATTTTATATTT
12110 CTTTTATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 8 0.30
20 16 0.59
21 1 0.04
22 2 0.07
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (21 bp):
AATTTTATATTTAGTTTTAAT
Found at i:12109 original size:19 final size:20
Alignment explanation
Indices: 12063--12103 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
12053 TTTTGAATTA
* *
12063 TTATCTTTATTTTTAATAAT
1 TTATATTTAGTTTTAATAAT
12083 TTATATTTAGTTTT-ATAAT
1 TTATATTTAGTTTTAATAAT
12102 TT
1 TT
12104 TAATTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (20 bp):
TTATATTTAGTTTTAATAAT
Found at i:12462 original size:139 final size:138
Alignment explanation
Indices: 12307--12672 Score: 606
Period size: 139 Copynumber: 2.6 Consensus size: 138
12297 ACATTTTTAA
12307 TATTTATTTTATTTATTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGTTCTTTTTTG
1 TATTTA-TTTATTTATTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGTTCTTTTTTG
12372 ATATTCATAAATAAATAAATATCATGTTTTTATAAATTATATATTAATTATTTTTAGAAAAAAAT
65 ATATTCATAAATAAATAAATATCATGTTTTTATAAATTATATATTAATTATTTTTAG-AAAAAAT
12437 GTTTTTTAGT
129 GTTTTTTAGT
* *
12447 TATTTATTTATTTATTAATATCAAAGAAAAGAGCTGTCTTAAAGCAACTAGAAGTTCTTTTTTTT
1 TATTTATTTATTTATTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGTTC-TTTTTTG
*
12512 ATATTCATAAATAAATAAATATCCTGTTTTTATAAATTATATATTAATTATTTTTAGAAAAAATG
65 ATATTCATAAATAAATAAATATCATGTTTTTATAAATTATATATTAATTATTTTTAGAAAAAATG
12577 TTTTTTAGT
130 TTTTTTAGT
* * * * * *
12586 TATTTATTTATTTTTTAATATCGAAGAAAGGAGCTGTCTTAAAGTACCTAGAAGTCCTTTTCTGA
1 TATTTATTTATTTATTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGTTCTTTTTTGA
**
12651 TATTTTTAAATAAATAAATATC
66 TATTCATAAATAAATAAATATC
12673 TTATTTATAC
Statistics
Matches: 212, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
138 26 0.12
139 118 0.56
140 68 0.32
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.45
Consensus pattern (138 bp):
TATTTATTTATTTATTAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAGTTCTTTTTTGA
TATTCATAAATAAATAAATATCATGTTTTTATAAATTATATATTAATTATTTTTAGAAAAAATGT
TTTTTAGT
Found at i:12746 original size:15 final size:16
Alignment explanation
Indices: 12706--12746 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
12696 TTCTTAAGAT
*
12706 TATTTGAAATAACATA
1 TATTTGAATTAACATA
12722 -ATTATGAATTAA-ATA
1 TATT-TGAATTAACATA
12737 TATTTGAATT
1 TATTTGAATT
12747 CTTAAATTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (16 bp):
TATTTGAATTAACATA
Found at i:16781 original size:55 final size:54
Alignment explanation
Indices: 16722--17427 Score: 766
Period size: 55 Copynumber: 12.8 Consensus size: 54
16712 GAATTTGAAA
* * *
16722 AATCTTCAAATGACGAGTCCGCTCCCTATTTCTTCAGGGAGTATA-AGACTCGAAC
1 AATCTTCAAA-AACGGGTCCGCTCCCTATTTCTTCAGAGAGTATAGA-ACTCGAAC
* * * *
16777 AATCTTCAGTAAACGTGTCTGCTCCCTA-TTCGTTCAGGGAGTATA-AGACTCGAAC
1 AATCTTCA-AAAACGGGTCCGCTCCCTATTTC-TTCAGAGAGTATAGA-ACTCGAAC
* ** * * *
16832 AATATTCATAAAATAGGTTCGCTCCCTA-TTCGTTCAGGGAGTATAAAACTCGAAC
1 AATCTTCA-AAAACGGGTCCGCTCCCTATTTC-TTCAGAGAGTATAGAACTCGAAC
* * *
16887 AATCTTCATAAAATGGGTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAAC
1 AATCTTCA-AAAACGGGTCCGCTCCCTATTTCTTCAGAGAGTATAGAACTCGAAC
*
16942 AATCTTCAACAAACGGGTCCGCTCTCTA-TTCTTTCAGAGAGTATAGAACTCGAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTTC-TTCAGAGAGTATAGAACTCGAAC
* * * * * *
16997 AATCTTCAACAAATGGGTTCACTCCCTA-TTCATTCAGGGAGTATAGAACTCAAAA
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTTC-TTCAGAGAGTATAGAACTCGAAC
* * *
17052 AATCTTCATAAAACGGGTCTGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAAC
1 AATCTTCA-AAAACGGGTCCGCTCCCTATTTCTTCAGAGAGTATAGAACTCGAAC
* * * *
17107 AATCTTCAACAAACGGGTCCGCTCTCTATTCCTTTAGAGAGTATAGAACTCAAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTTCTTCAGAGAGTATAGAACTCGAAC
* * *
17162 AATCTTCATAAAATGGGTCCG-TACTCTATTCCTTCAGAGAGTATAGAACTCGAAC
1 AATCTTCA-AAAACGGGTCCGCT-CCCTATTTCTTCAGAGAGTATAGAACTCGAAC
* * *
17217 AATCTTCAATAAACGGGTCCTCTCTCTATTCCTTCAGAGAGTATAGAACTCGAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTTCTTCAGAGAGTATAGAACTCGAAC
* *
17272 AATCTTCAACAAATGGGTCCGCTCCCTA-TTCTATCAGAGAGTATAGAACTCAAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTTCT-TCAGAGAGTATAGAACTCGAAC
* * *
17327 AATCTTCAACAAATGGGTCCGCTCCTTATTT-TATCAGAGAGTATAGACCTCGAAC
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTTCT-TCAGAGAGTATAGAACTCGAAC
17382 AATCTTCAACAAACGGGTCCGCTCCCTA-TTCTATCAGAGAGTATAG
1 AATCTTCAA-AAACGGGTCCGCTCCCTATTTCT-TCAGAGAGTATAG
17428 GACTTGATCT
Statistics
Matches: 578, Mismatches: 57, Indels: 32
0.87 0.09 0.05
Matches are distributed among these distances:
54 14 0.02
55 553 0.96
56 11 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (54 bp):
AATCTTCAAAAACGGGTCCGCTCCCTATTTCTTCAGAGAGTATAGAACTCGAAC
Found at i:16995 original size:165 final size:165
Alignment explanation
Indices: 16738--17427 Score: 896
Period size: 165 Copynumber: 4.2 Consensus size: 165
16728 CAAATGACGA
* * * ** * *
16738 GTCCGCTCCCTATTTCTTCAGGGAGTATA-AGACTCGAACAATCTTCAGTAAACGTGTCTGCTCC
1 GTCCGCTCTCTATTCCTTCAGAGAGTATAGA-ACTCGAACAATCTTCAACAAACGGGTCCGCTCC
* * * * * * *
16802 CTATTCGTTCAGGGAGTATA-AGACTCGAACAATATTCATA-AAATAGGTTCGCTCCCTATTCGT
65 CTATTCTTTCAGAGAGTATAGA-ACTCAAACAATCTTCA-ACAAATGGGTCCGCTCCCTATTCAT
* * *
16865 TCAGGGAGTATAAAACTCGAACAATCTTCATA-AAATGG
128 TCAGAGAGTATAGAACTCGAACAATCTTCA-ACAAACGG
*
16903 GTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCGCTCTC
1 GTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCGCTCCC
* * *
16968 TATTCTTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAATGGGTTCACTCCCTATTCATTCA
66 TATTCTTTCAGAGAGTATAGAACTCAAACAATCTTCAACAAATGGGTCCGCTCCCTATTCATTCA
* * *
17033 GGGAGTATAGAACTCAAAAAATCTTCATA-AAACGG
131 GAGAGTATAGAACTCGAACAATCTTCA-ACAAACGG
* *
17068 GTCTGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCGCTCTC
1 GTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCGCTCCC
* *
17133 TATTCCTTT-AGAGAGTATAGAACTCAAACAATCTTCATA-AAATGGGTCCG-TACTCTATTCCT
66 TATT-CTTTCAGAGAGTATAGAACTCAAACAATCTTCA-ACAAATGGGTCCGCT-CCCTATTCAT
*
17195 TCAGAGAGTATAGAACTCGAACAATCTTCAATAAACGG
128 TCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGG
* *
17233 GTCCTCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAATGGGTCCGCTCCC
1 GTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCGCTCCC
* * *
17298 TATTCTATCAGAGAGTATAGAACTCAAACAATCTTCAACAAATGGGTCCGCTCCTTATT-TTATC
66 TATTCTTTCAGAGAGTATAGAACTCAAACAATCTTCAACAAATGGGTCCGCTCCCTATTCAT-TC
*
17362 AGAGAGTATAGACCTCGAACAATCTTCAACAAACGG
130 AGAGAGTATAGAACTCGAACAATCTTCAACAAACGG
*
17398 GTCCGCTCCCTATT-CTATCAGAGAGTATAG
1 GTCCGCTCTCTATTCCT-TCAGAGAGTATAG
17428 GACTTGATCT
Statistics
Matches: 474, Mismatches: 39, Indels: 24
0.88 0.07 0.04
Matches are distributed among these distances:
164 10 0.02
165 456 0.96
166 8 0.02
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.28
Consensus pattern (165 bp):
GTCCGCTCTCTATTCCTTCAGAGAGTATAGAACTCGAACAATCTTCAACAAACGGGTCCGCTCCC
TATTCTTTCAGAGAGTATAGAACTCAAACAATCTTCAACAAATGGGTCCGCTCCCTATTCATTCA
GAGAGTATAGAACTCGAACAATCTTCAACAAACGG
Found at i:17504 original size:37 final size:38
Alignment explanation
Indices: 17445--17516 Score: 119
Period size: 37 Copynumber: 1.9 Consensus size: 38
17435 TCTTCATAAA
* *
17445 ATGAGTTTTCTTCACTACTCTTCCGTGAATGCTTATAT
1 ATGAGTTTGCTTCACTACTCTTCCGTGAAGGCTTATAT
17483 ATGA-TTTGCTTCACTACTCTTCCGTGAAGGCTTA
1 ATGAGTTTGCTTCACTACTCTTCCGTGAAGGCTTA
17517 AGATTAAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
37 28 0.88
38 4 0.12
ACGTcount: A:0.21, C:0.22, G:0.15, T:0.42
Consensus pattern (38 bp):
ATGAGTTTGCTTCACTACTCTTCCGTGAAGGCTTATAT
Found at i:17827 original size:12 final size:12
Alignment explanation
Indices: 17812--17837 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
17802 TCATGCAATT
17812 ATGGATGCCATG
1 ATGGATGCCATG
17824 ATGGATGCCATG
1 ATGGATGCCATG
17836 AT
1 AT
17838 CCTATTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (12 bp):
ATGGATGCCATG
Found at i:18845 original size:22 final size:25
Alignment explanation
Indices: 18819--18864 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
18809 CTTTTATTTC
18819 TTTTT-CTTT-TTCTTTTTTCATCA
1 TTTTTCCTTTCTTCTTTTTTCATCA
18842 TTTTTCCTTTCTTCTTTTTTCAT
1 TTTTTCCTTTCTTCTTTTTTCAT
18865 TTTCTCAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 5 0.24
24 4 0.19
25 12 0.57
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.74
Consensus pattern (25 bp):
TTTTTCCTTTCTTCTTTTTTCATCA
Found at i:18847 original size:17 final size:16
Alignment explanation
Indices: 18825--19048 Score: 98
Period size: 17 Copynumber: 14.5 Consensus size: 16
18815 TTTCTTTTTC
18825 TTTTTCTTTTTTCATCA
1 TTTTTCTTTTTTC-TCA
*
18842 TTTTTCCTTTCTTCT--
1 TTTTT-CTTTTTTCTCA
*
18857 TTTTTC-ATTTTCTCA
1 TTTTTCTTTTTTCTCA
*
18872 GTTTTTCCATTTTTC-CA
1 -TTTTT-CTTTTTTCTCA
18889 -TTTTCTATTTTTCTC-
1 TTTTTCT-TTTTTCTCA
18904 -TTTTC---TTTC-C-
1 TTTTTCTTTTTTCTCA
18914 -TTTTCATTTTTTCATCA
1 TTTTTC-TTTTTTC-TCA
18931 TTTTTCATTTTTTCTCA
1 TTTTTC-TTTTTTCTCA
18948 TTTTTCTTTTCTTCT-A
1 TTTTTCTTTT-TTCTCA
18964 TTTTTTCTCATTTTT-T-A
1 -TTTTTCT--TTTTTCTCA
*
18981 --CTTCTTTTTT-TCA
1 TTTTTCTTTTTTCTCA
*
18994 -TTTTCTTTCTT-TCA
1 TTTTTCTTTTTTCTCA
*
19008 TTTTTTTTATTTTTCTC-
1 -TTTTTCT-TTTTTCTCA
19025 TTTTTCTTTTTTC-CA
1 TTTTTCTTTTTTCTCA
19040 TTTCTTCTT
1 TTT-TTCTT
19049 CAAGCGAAAT
Statistics
Matches: 168, Mismatches: 11, Indels: 57
0.71 0.05 0.24
Matches are distributed among these distances:
10 6 0.04
11 4 0.02
12 6 0.04
13 6 0.04
14 22 0.13
15 29 0.17
16 28 0.17
17 35 0.21
18 29 0.17
19 3 0.02
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTCTTTTTTCTCA
Found at i:18865 original size:22 final size:21
Alignment explanation
Indices: 18809--19048 Score: 88
Period size: 23 Copynumber: 10.9 Consensus size: 21
18799 TTGAACCCCC
18809 CTTTTATTTC-TTTTTCTTTTT
1 CTTTT-TTTCATTTTTCTTTTT
18830 CTTTTTTCATCATTTTTCCTTTCTT
1 CTTTTTT--TCATTTTT-CTTT-TT
18855 C-TTTTTTCATTTTCTCAGTTTTT
1 CTTTTTTTCATTTT-TC--TTTTT
* * *
18878 CCATTTTTCCATTTTCTATTTTT
1 -CTTTTTTTCATTTT-TCTTTTT
* *
18901 C-TCTTTTC---TTTCCTTTT
1 CTTTTTTTCATTTTTCTTTTT
18918 CATTTTTTCATCATTTTTCATTTTTT
1 C-TTTTTT--TCATTTTTC--TTTTT
* *
18944 CTCATTTTTC--TTTTCTTCTAT
1 CT-TTTTTTCATTTTTCTT-TTT
* **
18965 -TTTTTCTCATTTTT-TACTT
1 CTTTTTTTCATTTTTCTTTTT
18984 CTTTTTTTCA-TTTTCTTTCTTT
1 CTTTTTTTCATTTTTC-TT-TTT
*
19006 CATTTTTTTTATTTTTCTCTTTTT
1 C-TTTTTTTCA-TTTT-TCTTTTT
*
19030 CTTTTTTCCATTTCTTCTT
1 CTTTTTTTCATTT-TTCTT
19049 CAAGCGAAAT
Statistics
Matches: 166, Mismatches: 21, Indels: 63
0.66 0.08 0.25
Matches are distributed among these distances:
17 6 0.04
18 2 0.01
19 14 0.08
20 14 0.08
21 19 0.11
22 26 0.16
23 29 0.17
24 23 0.14
25 22 0.13
26 11 0.07
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (21 bp):
CTTTTTTTCATTTTTCTTTTT
Found at i:18878 original size:26 final size:26
Alignment explanation
Indices: 18849--19036 Score: 95
Period size: 24 Copynumber: 7.4 Consensus size: 26
18839 TCATTTTTCC
18849 TTTCTTC-TTTTTTCATTTTCTCAGTT
1 TTTCTTCTTTTTTTCATTTTCTCA-TT
* *
18875 TTTC--CATTTTTCCATTTTCT-ATT
1 TTTCTTCTTTTTTTCATTTTCTCATT
*
18898 TTTC-TCTTTTCTTTC-CTTT-TCATTT
1 TTTCTTCTTTT-TTTCATTTTCTCA-TT
* *
18923 TTTCATC-ATTTTTCATTTTTTCTCATT
1 TTTCTTCTTTTTTTCA--TTTTCTCATT
18950 TTTCTT-TTCTTCTATT--TTTTCTCATTT
1 TTTCTTCTT-TT-T-TTCATTTTCTCA-TT
18977 TTTACTTCTTTTTTTCATTTTCT--TT
1 TTT-CTTCTTTTTTTCATTTTCTCATT
*
19002 CTTTCAT-TTTTTTT-ATTTTTCTC-TT
1 -TTTCTTCTTTTTTTCA-TTTTCTCATT
19027 TTTCTT-TTTT
1 TTTCTTCTTTT
19037 CCATTTCTTC
Statistics
Matches: 130, Mismatches: 10, Indels: 46
0.70 0.05 0.25
Matches are distributed among these distances:
23 8 0.06
24 36 0.28
25 30 0.23
26 19 0.15
27 16 0.12
28 16 0.12
29 3 0.02
30 2 0.02
ACGTcount: A:0.09, C:0.19, G:0.01, T:0.72
Consensus pattern (26 bp):
TTTCTTCTTTTTTTCATTTTCTCATT
Found at i:18884 original size:25 final size:23
Alignment explanation
Indices: 18856--18901 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
18846 TCCTTTCTTC
*
18856 TTTTTTCATTTTCTCAGTTTTTCCA
1 TTTTTCCATTTTCT-A-TTTTTCCA
18881 TTTTTCCATTTTCTATTTTTC
1 TTTTTCCATTTTCTATTTTTC
18902 TCTTTTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 1 0.05
25 13 0.65
ACGTcount: A:0.11, C:0.20, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTTTCCATTTTCTATTTTTCCA
Found at i:18902 original size:8 final size:8
Alignment explanation
Indices: 18825--19047 Score: 68
Period size: 8 Copynumber: 27.9 Consensus size: 8
18815 TTTCTTTTTC
18825 TTTTTCT-
1 TTTTTCTA
18832 TTTTTCATCA
1 TTTTTC-T-A
18842 TTTTTCCT-
1 TTTTT-CTA
*
18850 TTCTTCT-
1 TTTTTCTA
18857 TTTTTC-A
1 TTTTTCTA
18864 -TTTTCTCA
1 TTTTTCT-A
*
18872 GTTTTTCCA
1 -TTTTTCTA
*
18881 TTTTTCCA
1 TTTTTCTA
18889 -TTTTCTA
1 TTTTTCTA
18896 TTTTTCT-
1 TTTTTCTA
* *
18903 CTTTTCTT
1 TTTTTCTA
18911 TCCTTTTC-A
1 T--TTTTCTA
18920 TTTTTTCATCA
1 -TTTTTC-T-A
18931 TTTTTC-A
1 TTTTTCTA
18938 TTTTTTCTCA
1 -TTTTTCT-A
18948 TTTTTCT-
1 TTTTTCTA
18955 TTTCTTCTA
1 TTT-TTCTA
18964 TTTTTTCTCA
1 -TTTTTCT-A
18974 TTTTT-TA
1 TTTTTCTA
* *
18981 --CTTCTT
1 TTTTTCTA
18987 TTTTTC-A
1 TTTTTCTA
18994 -TTTTCT-
1 TTTTTCTA
19000 TTCTTTC-A
1 TT-TTTCTA
*
19008 TTTTTTTTA
1 -TTTTTCTA
*
19017 TTTTTCTC
1 TTTTTCTA
19025 TTTTTCT-
1 TTTTTCTA
*
19032 TTTTTCCA
1 TTTTTCTA
19040 TTTCTTCT
1 TTT-TTCT
19048 TCAAGCGAAA
Statistics
Matches: 165, Mismatches: 16, Indels: 68
0.66 0.06 0.27
Matches are distributed among these distances:
5 2 0.01
6 11 0.07
7 37 0.22
8 62 0.38
9 23 0.14
10 28 0.17
11 2 0.01
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.71
Consensus pattern (8 bp):
TTTTTCTA
Found at i:18967 original size:10 final size:10
Alignment explanation
Indices: 18917--18997 Score: 63
Period size: 9 Copynumber: 8.7 Consensus size: 10
18907 TCTTTCCTTT
18917 TCATTTTTTC
1 TCATTTTTTC
18927 ATCA--TTTT-
1 -TCATTTTTTC
18935 TCATTTTTTC
1 TCATTTTTTC
18945 TCA-TTTTTC
1 TCATTTTTTC
*
18954 T--TTTCTTC
1 TCATTTTTTC
18962 T-ATTTTTTC
1 TCATTTTTTC
18971 TCATTTTTTAC
1 TCATTTTTT-C
18982 TTC-TTTTTT-
1 -TCATTTTTTC
18991 TCATTTT
1 TCATTTT
18998 CTTTCTTTCA
Statistics
Matches: 59, Mismatches: 2, Indels: 20
0.73 0.02 0.25
Matches are distributed among these distances:
7 3 0.05
8 8 0.14
9 26 0.44
10 10 0.17
11 10 0.17
12 2 0.03
ACGTcount: A:0.11, C:0.17, G:0.00, T:0.72
Consensus pattern (10 bp):
TCATTTTTTC
Found at i:19021 original size:32 final size:32
Alignment explanation
Indices: 18965--19042 Score: 86
Period size: 32 Copynumber: 2.3 Consensus size: 32
18955 TTTCTTCTAT
* *
18965 TTTTTCTCATTTTTTACTTCTTTTTTTCATTTTC
1 TTTTT-TCATTTTTTA-TTATTTTTCTCATTTTC
*
18999 TTTCTTTCATTTTTT-TTATTTTTCTCTTTTTC
1 TTT-TTTCATTTTTTATTATTTTTCTCATTTTC
19031 TTTTTTCCATTT
1 TTTTTT-CATTT
19043 CTTCTTCAAG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
31 3 0.08
32 22 0.56
34 12 0.31
35 2 0.05
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.76
Consensus pattern (32 bp):
TTTTTTCATTTTTTATTATTTTTCTCATTTTC
Found at i:19047 original size:24 final size:24
Alignment explanation
Indices: 18931--19047 Score: 66
Period size: 26 Copynumber: 4.6 Consensus size: 24
18921 TTTTTCATCA
*
18931 TTTTTCATTTTTTCTCATTT-TTCT
1 TTTTTCATTTCTTCTC-TTTATTCT
*
18955 TTTCTTCTATTTTTTCTCATTTTTTACTTCTT
1 TTT-TTC-ATTTCTTCTC----TTTA-TTC-T
18987 TTTTTCATTTTCTT-TCTTTCATT-T
1 TTTTTCA-TTTCTTCTCTTT-ATTCT
19011 TTTTT-ATTT-TTCTCTTT-TTCT
1 TTTTTCATTTCTTCTCTTTATTCT
19032 TTTTTCCATTTCTTCT
1 TTTTT-CATTTCTTCT
19048 TCAAGCGAAA
Statistics
Matches: 76, Mismatches: 2, Indels: 30
0.70 0.02 0.28
Matches are distributed among these distances:
20 2 0.03
21 8 0.11
22 8 0.11
23 5 0.07
24 13 0.17
25 3 0.04
26 15 0.20
27 1 0.01
29 3 0.04
30 3 0.04
31 11 0.14
32 4 0.05
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.74
Consensus pattern (24 bp):
TTTTTCATTTCTTCTCTTTATTCT
Found at i:24279 original size:30 final size:30
Alignment explanation
Indices: 24208--24267 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
24198 ACAATTTAAG
24208 GCAAAATGTTTTTGGACTGGAATTGAATTT
1 GCAAAATGTTTTTGGACTGGAATTGAATTT
* *
24238 GCAAAATGTTTTTGGATTTGAATTGAATTT
1 GCAAAATGTTTTTGGACTGGAATTGAATTT
24268 ATTCAAAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.43
Consensus pattern (30 bp):
GCAAAATGTTTTTGGACTGGAATTGAATTT
Found at i:24488 original size:20 final size:21
Alignment explanation
Indices: 24447--24501 Score: 94
Period size: 20 Copynumber: 2.7 Consensus size: 21
24437 ATGCAATTAG
24447 TGCATCGATGCATCCTTGCCA
1 TGCATCGATGCATCCTTGCCA
24468 TGCATCGATGCATCC-TGCCA
1 TGCATCGATGCATCCTTGCCA
*
24488 TGCATCCATGCATC
1 TGCATCGATGCATC
24502 AAGGCTGCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 18 0.55
21 15 0.45
ACGTcount: A:0.20, C:0.35, G:0.18, T:0.27
Consensus pattern (21 bp):
TGCATCGATGCATCCTTGCCA
Found at i:24905 original size:34 final size:32
Alignment explanation
Indices: 24866--24935 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 32
24856 TTTTGTAAAG
* * *
24866 GGGAAAGGTTCTAGCTTATCCCGTGTAAAAGCTA
1 GGGAAAGGTTATAGCTTAGCCCG-G-AAAAACTA
*
24900 GGGAAAGGTTATAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTATAGCTTAGCCCGGAAAAACTA
24932 GGGA
1 GGGA
24936 GTTGTAAGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
32 11 0.34
33 1 0.03
34 20 0.62
ACGTcount: A:0.33, C:0.14, G:0.30, T:0.23
Consensus pattern (32 bp):
GGGAAAGGTTATAGCTTAGCCCGGAAAAACTA
Found at i:25819 original size:19 final size:20
Alignment explanation
Indices: 25795--25842 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
25785 AATGATTTTC
*
25795 TTTTGAAAACAAAAAT-AGA
1 TTTTGAAAACAAAAATGAAA
* *
25814 TTTTGAAAGCCAAAATGAAA
1 TTTTGAAAACAAAAATGAAA
25834 TTTTGAAAA
1 TTTTGAAAA
25843 AGGATTTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 14 0.58
20 10 0.42
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.29
Consensus pattern (20 bp):
TTTTGAAAACAAAAATGAAA
Found at i:27155 original size:30 final size:30
Alignment explanation
Indices: 27119--27178 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
27109 ACAATTTAAG
27119 GCAAAATGTTTTTGGACTGGAATTGAATTT
1 GCAAAATGTTTTTGGACTGGAATTGAATTT
* *
27149 GCAAAATGTTTTTGGATTTGAATTGAATTT
1 GCAAAATGTTTTTGGACTGGAATTGAATTT
27179 ATTCAAAGTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.43
Consensus pattern (30 bp):
GCAAAATGTTTTTGGACTGGAATTGAATTT
Found at i:27370 original size:20 final size:21
Alignment explanation
Indices: 27329--27383 Score: 85
Period size: 20 Copynumber: 2.7 Consensus size: 21
27319 ATGCAATTAG
27329 TGCATCGATGCATCCTTGCCA
1 TGCATCGATGCATCCTTGCCA
*
27350 TGCATCGATGTATCC-TGCCA
1 TGCATCGATGCATCCTTGCCA
*
27370 TGCATCCATGCATC
1 TGCATCGATGCATC
27384 AAGGCTGCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
20 17 0.55
21 14 0.45
ACGTcount: A:0.20, C:0.33, G:0.18, T:0.29
Consensus pattern (21 bp):
TGCATCGATGCATCCTTGCCA
Found at i:27787 original size:34 final size:32
Alignment explanation
Indices: 27748--27817 Score: 95
Period size: 34 Copynumber: 2.1 Consensus size: 32
27738 TTTTGTAAAG
* *
27748 GGGAAAGGTTCTAGCTTATCCCGTGTAAAAGCTA
1 GGGAAAGGTTCTAGCTTAGCCCG-G-AAAAACTA
*
27782 GGGAAAGGTTCTAGTTTAGCCCGGAAAAACTA
1 GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
27814 GGGA
1 GGGA
27818 GTTGTAAGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 11 0.33
33 1 0.03
34 21 0.64
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (32 bp):
GGGAAAGGTTCTAGCTTAGCCCGGAAAAACTA
Found at i:32132 original size:150 final size:150
Alignment explanation
Indices: 31861--32177 Score: 582
Period size: 150 Copynumber: 2.1 Consensus size: 150
31851 GGGTAGAGGG
* * *
31861 TCTACGCGGTCCTTCGGGACATATGTATATTCTTTGGAACATGTGTGAAGTCTTGGAAAGACACA
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATATGTGAAGTCTTGGAAAGACACA
31926 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
31991 ATATGGCACTACGGTGCAAT
131 ATATGGCACTACGGTGCAAT
*
32011 TCTACGCGGTCCTTCGGGATATATATATATTCTGTGGAACATATGTGAAGTCTTGGAAAGACACA
1 TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATATGTGAAGTCTTGGAAAGACACA
32076 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
66 TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
32141 ATATGGCACTACGGTGCAAT
131 ATATGGCACTACGGTGCAAT
32161 TCTACGCGG-CACTTCGG
1 TCTACGCGGTC-CTTCGG
32178 TGCATTTATA
Statistics
Matches: 162, Mismatches: 4, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
149 1 0.01
150 161 0.99
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.34
Consensus pattern (150 bp):
TCTACGCGGTCCTTCGGGACATATATATATTCTGTGGAACATATGTGAAGTCTTGGAAAGACACA
TACTTGATCCCTAGTATATGTATATGATTCTTAAGGAATTCTATGTGGTCCTTATGGACATCATT
ATATGGCACTACGGTGCAAT
Found at i:32189 original size:23 final size:23
Alignment explanation
Indices: 32145--32189 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
32135 ATCATTATAT
*
32145 GGCACTACGGTGCAATTCTACGC
1 GGCACTACGGTGCAATTATACGC
* *
32168 GGCACTTCGGTGCATTTATACG
1 GGCACTACGGTGCAATTATACG
32190 AGCTGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (23 bp):
GGCACTACGGTGCAATTATACGC
Found at i:39155 original size:21 final size:20
Alignment explanation
Indices: 39139--39203 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
39129 ATCGCAGTGT
39139 GAATAGTAAAATTCGCAACGC
1 GAATAGTAAAA-TCGCAACGC
39160 GAATAGTAAAATCGCAACGC
1 GAATAGTAAAATCGCAACGC
* *
39180 GAATTGAAAAATCGCAACGC
1 GAATAGTAAAATCGCAACGC
39200 GAAT
1 GAAT
39204 TTAGAAAATC
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
20 31 0.74
21 11 0.26
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.17
Consensus pattern (20 bp):
GAATAGTAAAATCGCAACGC
Found at i:39213 original size:21 final size:21
Alignment explanation
Indices: 39146--39213 Score: 88
Period size: 20 Copynumber: 3.3 Consensus size: 21
39136 TGTGAATAGT
39146 AAAATTCGCAACGCGAA--TAG
1 AAAA-TCGCAACGCGAATTTAG
*
39166 TAAAATCGCAACGCGAATTGA-
1 -AAAATCGCAACGCGAATTTAG
39187 AAAATCGCAACGCGAATTTAG
1 AAAATCGCAACGCGAATTTAG
39208 AAAATC
1 AAAATC
39214 ATAAAATCGC
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
20 31 0.74
21 10 0.24
22 1 0.02
ACGTcount: A:0.46, C:0.19, G:0.18, T:0.18
Consensus pattern (21 bp):
AAAATCGCAACGCGAATTTAG
Found at i:39622 original size:21 final size:21
Alignment explanation
Indices: 39582--39674 Score: 127
Period size: 21 Copynumber: 4.5 Consensus size: 21
39572 CGATTTTACG
* *
39582 TCACCTTGCGA-TTGTACTAT
1 TCACATTGCGATTTTTACTAT
39602 TCACATTGCGATTTTTACTAT
1 TCACATTGCGATTTTTACTAT
*
39623 TCACATTACGATTTTTACTAT
1 TCACATTGCGATTTTTACTAT
*
39644 TCACGTTGCGATTTTT-CTAT
1 TCACATTGCGATTTTTACTAT
*
39664 TCACGTTGCGA
1 TCACATTGCGA
39675 AATTAGAGTT
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
20 25 0.37
21 42 0.63
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.44
Consensus pattern (21 bp):
TCACATTGCGATTTTTACTAT
Found at i:39706 original size:20 final size:20
Alignment explanation
Indices: 39683--39760 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 20
39673 GAAATTAGAG
39683 TTCGTGTTGCGAATTTGACT
1 TTCGTGTTGCGAATTTGACT
*
39703 TTCGCGTTCTCGTTGAGAATTTGACT
1 TT--CG---T-GTTGCGAATTTGACT
*
39729 TTCGCGTTGCGAATTTGAC-
1 TTCGTGTTGCGAATTTGACT
39748 TTCTGTGTTGCGA
1 TTC-GTGTTGCGA
39761 TTTACAAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
19 3 0.06
20 23 0.49
22 2 0.04
24 2 0.04
25 1 0.02
26 16 0.34
ACGTcount: A:0.14, C:0.18, G:0.26, T:0.42
Consensus pattern (20 bp):
TTCGTGTTGCGAATTTGACT
Found at i:39817 original size:20 final size:19
Alignment explanation
Indices: 39768--39821 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
39758 CGATTTACAA
39768 ATTCGCGTTGCGAAATTGG
1 ATTCGCGTTGCGAAATTGG
** *
39787 AAACTGGGTTGCGAAATTGG
1 ATTC-GCGTTGCGAAATTGG
39807 AGTTCGCGTTGCGAA
1 A-TTCGCGTTGCGAA
39822 TTTATTAGTC
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
19 2 0.07
20 24 0.89
21 1 0.04
ACGTcount: A:0.24, C:0.15, G:0.33, T:0.28
Consensus pattern (19 bp):
ATTCGCGTTGCGAAATTGG
Found at i:40896 original size:19 final size:20
Alignment explanation
Indices: 40855--41093 Score: 103
Period size: 20 Copynumber: 11.9 Consensus size: 20
40845 ATAATCAACG
* *
40855 AATTCGCAACTCG-ATTTCG
1 AATTCGCAACACGAATTTCA
*
40874 AATTCGCAACACGAACTTCA
1 AATTCGCAACACGAATTTCA
* *
40894 ATTTCGTAACAC-AATTTCTA
1 AATTCGCAACACGAATTTC-A
**
40914 AATTCGCAACACGAATTTGG
1 AATTCGCAACACGAATTTCA
* *
40934 AATTCGTAACACAGAA-GTCA
1 AATTCGCAACAC-GAATTTCA
* * *
40954 AATTTGCAACTCGAATGTCA
1 AATTCGCAACACGAATTTCA
* * *
40974 TTATTTCGCAACATGAATTTCT
1 --AATTCGCAACACGAATTTCA
** * * * *
40996 TTTTTGCAACTCGATTTTTA
1 AATTCGCAACACGAATTTCA
*
41016 AATTCGCAACAC-AAGTTTCT
1 AATTCGCAACACGAA-TTTCA
** * *
41036 TTTTCGCAACAAG-ATTTCCT
1 AATTCGCAACACGAATTT-CA
**
41056 AATTCGCAA-AGCGCGTTTCA
1 AATTCGCAACA-CGAATTTCA
* *
41076 ATTTCGCAACGCGAATTT
1 AATTCGCAACACGAATTT
41094 TATTTTTGCA
Statistics
Matches: 158, Mismatches: 49, Indels: 25
0.68 0.21 0.11
Matches are distributed among these distances:
19 25 0.16
20 108 0.68
21 11 0.07
22 14 0.09
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
AATTCGCAACACGAATTTCA
Found at i:40984 original size:22 final size:20
Alignment explanation
Indices: 40955--41009 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
40945 CAGAAGTCAA
40955 ATTTGCAACTCGAATGTCATT
1 ATTTGCAACTCGAATGTC-TT
*
40976 ATTTCGCAACAT-GAATTTCTT
1 ATTT-GCAAC-TCGAATGTCTT
*
40997 TTTTGCAACTCGA
1 ATTTGCAACTCGA
41010 TTTTTAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 1 0.03
20 7 0.24
21 9 0.31
22 11 0.38
23 1 0.03
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (20 bp):
ATTTGCAACTCGAATGTCTT
Found at i:41169 original size:20 final size:19
Alignment explanation
Indices: 41122--41169 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
41112 TCTGGATTCC
**
41122 CAACACGAATTTTAATTTTG
1 CAACAC-AATTTTAATTTCA
*
41142 CAAAACAACTTTTAATTTCA
1 CAACACAA-TTTTAATTTCA
41162 CAACACAA
1 CAACACAA
41170 ATGTAAATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 2 0.09
20 21 0.91
ACGTcount: A:0.44, C:0.21, G:0.04, T:0.31
Consensus pattern (19 bp):
CAACACAATTTTAATTTCA
Found at i:42735 original size:20 final size:20
Alignment explanation
Indices: 42712--42749 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
42702 ACGAAAATGA
42712 AATTAGCAA-GTCGAATTTTG
1 AATTAGCAACG-CGAATTTTG
*
42732 AATTCGCAACGCGAATTT
1 AATTAGCAACGCGAATTT
42750 CTTTTTCGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 15 0.94
21 1 0.06
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (20 bp):
AATTAGCAACGCGAATTTTG
Found at i:43166 original size:22 final size:22
Alignment explanation
Indices: 43141--43196 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
43131 GATGGAGGGG
* * *
43141 TGTCACCGGATATGGGGACGGA
1 TGTCGCCGGAGATGGAGACGGA
43163 TGTCGCCGGAGATGGAGACGGA
1 TGTCGCCGGAGATGGAGACGGA
43185 TGTCGCCGGAGA
1 TGTCGCCGGAGA
43197 GAGTGAGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.21, C:0.20, G:0.43, T:0.16
Consensus pattern (22 bp):
TGTCGCCGGAGATGGAGACGGA
Found at i:43327 original size:20 final size:20
Alignment explanation
Indices: 43281--43495 Score: 93
Period size: 20 Copynumber: 10.7 Consensus size: 20
43271 ATTTACATTT
*
43281 GTGTTGCGAAATTAAAA-GC
1 GTGTTGCGAAATTAAAATTC
*
43300 TGTTTTGCGAAATTAAAATTC
1 -GTGTTGCGAAATTAAAATTC
*
43321 GTGTTGCG-AATTCAAAAATC
1 GTGTTGCGAAATT-AAAATTC
* * * *
43341 GAGTTGCCAAAATAAATTTC
1 GTGTTGCGAAATTAAAATTC
** * **
43361 GCATTGC-ATAATTGAAACGC
1 GTGTTGCGA-AATTAAAATTC
* *
43381 GCT-TTGCG-AATTAGAAAATA
1 G-TGTTGCGAAATTA-AAATTC
* *** *
43401 TTGTTGCGAAAAGGAAATTT
1 GTGTTGCGAAATTAAAATTC
*
43421 GTGTTGC-AAATTTAAAAATC
1 GTGTTGCGAAA-TTAAAATTC
* *
43441 GAGTTGCGAAA-AAGAAATTC
1 GTGTTGCGAAATTA-AAATTC
*
43461 GTGTTGCGAAATTGTCAAATTC
1 GTGTTGCGAAA-T-TAAAATTC
43483 GTGTTGCGAAATT
1 GTGTTGCGAAATT
43496 GTCAAATTCA
Statistics
Matches: 141, Mismatches: 39, Indels: 30
0.67 0.19 0.14
Matches are distributed among these distances:
19 14 0.10
20 100 0.71
21 10 0.07
22 17 0.12
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
GTGTTGCGAAATTAAAATTC
Found at i:43450 original size:40 final size:42
Alignment explanation
Indices: 43403--43493 Score: 123
Period size: 40 Copynumber: 2.2 Consensus size: 42
43393 AGAAAATATT
* *
43403 GTTGCGAAAAGGAAATTTGTGTTGC-AAATT-TAAAAATCGA
1 GTTGCGAAAAAGAAATTCGTGTTGCGAAATTGTAAAAATCGA
* * *
43443 GTTGCGAAAAAGAAATTCGTGTTGCGAAATTGTCAAATTCGT
1 GTTGCGAAAAAGAAATTCGTGTTGCGAAATTGTAAAAATCGA
43485 GTTGCGAAA
1 GTTGCGAAA
43494 TTGTCAAATT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 23 0.52
41 5 0.11
42 16 0.36
ACGTcount: A:0.36, C:0.10, G:0.24, T:0.30
Consensus pattern (42 bp):
GTTGCGAAAAAGAAATTCGTGTTGCGAAATTGTAAAAATCGA
Found at i:43483 original size:22 final size:22
Alignment explanation
Indices: 43455--43534 Score: 110
Period size: 22 Copynumber: 3.7 Consensus size: 22
43445 TGCGAAAAAG
43455 AAATTCGTGTTGCGAAATTGTC
1 AAATTCGTGTTGCGAAATTGTC
43477 AAATTCGTGTTGCGAAATTGTC
1 AAATTCGTGTTGCGAAATTGTC
* * *
43499 AAATTCATGTTGTG-AATT-CC
1 AAATTCGTGTTGCGAAATTGTC
*
43519 AAATTCGAGTTGCGAA
1 AAATTCGTGTTGCGAA
43535 TTCGAAATCG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.24
21 5 0.10
22 34 0.67
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (22 bp):
AAATTCGTGTTGCGAAATTGTC
Found at i:43523 original size:20 final size:20
Alignment explanation
Indices: 43455--43556 Score: 73
Period size: 22 Copynumber: 5.0 Consensus size: 20
43445 TGCGAAAAAG
* *
43455 AAATTCGTGTTGCGAAATTGTC
1 AAATTCGAGTTGCG-AATT-CC
* *
43477 AAATTCGTGTTGCGAAATTGTC
1 AAATTCGAGTTGCG-AATT-CC
*
43499 AAATTC-ATGTTGTGAATTCC
1 AAATTCGA-GTTGCGAATTCC
*
43519 AAATTCGAGTTGCGAATTCG
1 AAATTCGAGTTGCGAATTCC
* *
43539 AAA-TCGACTTACGAATTC
1 AAATTCGAGTTGCGAATTC
43557 GTTGGTTTTT
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
19 13 0.18
20 20 0.28
21 5 0.07
22 33 0.46
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (20 bp):
AAATTCGAGTTGCGAATTCC
Found at i:43553 original size:19 final size:20
Alignment explanation
Indices: 43512--43557 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
43502 TTCATGTTGT
* * *
43512 GAATTCCAAATTCGAGTTGC
1 GAATTCGAAATTCGACTTAC
43532 GAATTCGAAA-TCGACTTAC
1 GAATTCGAAATTCGACTTAC
43551 GAATTCG
1 GAATTCG
43558 TTGGTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.28
Consensus pattern (20 bp):
GAATTCGAAATTCGACTTAC
Found at i:44619 original size:20 final size:20
Alignment explanation
Indices: 44571--44627 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
44561 TTTTCCGACT
*
44571 ATCGCAATACGAATATGTAA
1 ATCGCAATGCGAATATGTAA
*
44591 ATCGCAATGCGAATATGTGA
1 ATCGCAATGCGAATATGTAA
*
44611 ATCGCAATGCGATTATG
1 ATCGCAATGCGAATATG
44628 ACTATTGCAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (20 bp):
ATCGCAATGCGAATATGTAA
Found at i:44637 original size:20 final size:20
Alignment explanation
Indices: 44611--44717 Score: 151
Period size: 20 Copynumber: 5.3 Consensus size: 20
44601 GAATATGTGA
*
44611 ATCGCAATGCGATTATGACT
1 ATCGCAATGCGATTCTGACT
*
44631 ATTGCAATGCGATTCTGACT
1 ATCGCAATGCGATTCTGACT
44651 ATCGCAATGCGATTCTGACT
1 ATCGCAATGCGATTCTGACT
* * *
44671 ATCGCAACGAGATTCTGATT
1 ATCGCAATGCGATTCTGACT
*
44691 ATCGCAACGCGATTCTGACT
1 ATCGCAATGCGATTCTGACT
*
44711 GTCGCAA
1 ATCGCAA
44718 CACTGAATTT
Statistics
Matches: 78, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 78 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (20 bp):
ATCGCAATGCGATTCTGACT
Found at i:44638 original size:40 final size:39
Alignment explanation
Indices: 44591--44717 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
44581 GAATATGTAA
*
44591 ATCGCAATGCGAATATGTGA-ATCGCAATGCGATTATGACT
1 ATCGCAATGCG-AT-TCTGACATCGCAATGCGATTATGACT
* *
44631 ATTGCAATGCGATTCTGACTATCGCAATGCGATTCTGACT
1 ATCGCAATGCGATTCTGAC-ATCGCAATGCGATTATGACT
* * * * *
44671 ATCGCAACGAGATTCTGATTATCGCAACGCGATTCTGACT
1 ATCGCAATGCGATTCTGA-CATCGCAATGCGATTATGACT
*
44711 GTCGCAA
1 ATCGCAA
44718 CACTGAATTT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
38 4 0.05
39 2 0.03
40 69 0.92
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (39 bp):
ATCGCAATGCGATTCTGACATCGCAATGCGATTATGACT
Found at i:44655 original size:60 final size:59
Alignment explanation
Indices: 44591--44717 Score: 148
Period size: 60 Copynumber: 2.1 Consensus size: 59
44581 GAATATGTAA
* * * * *
44591 ATCGCAATGCGAATATGTGA-ATCGCAATGCGATTATGACTATTGCAATGCGATTCTGACT
1 ATCGCAATGCG-AT-TCTGACATCGCAACGAGATTATGACTATCGCAACGCGATTCTGACT
* *
44651 ATCGCAATGCGATTCTGACTATCGCAACGAGATTCTGATTATCGCAACGCGATTCTGACT
1 ATCGCAATGCGATTCTGAC-ATCGCAACGAGATTATGACTATCGCAACGCGATTCTGACT
*
44711 GTCGCAA
1 ATCGCAA
44718 CACTGAATTT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
58 4 0.07
59 2 0.04
60 51 0.89
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (59 bp):
ATCGCAATGCGATTCTGACATCGCAACGAGATTATGACTATCGCAACGCGATTCTGACT
Found at i:45571 original size:24 final size:24
Alignment explanation
Indices: 45539--45616 Score: 111
Period size: 24 Copynumber: 3.2 Consensus size: 24
45529 GTATTCGAAA
45539 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATCTTGGTCAATACCCGGAC
* *
45563 TTTGATCTTGGTCAATACCTGAAC
1 TTTGATCTTGGTCAATACCCGGAC
* * *
45587 TTTGATCTTAGTCAATACTCGGAT
1 TTTGATCTTGGTCAATACCCGGAC
45611 TTTGAT
1 TTTGAT
45617 GATGTTTCAG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.23, C:0.19, G:0.18, T:0.40
Consensus pattern (24 bp):
TTTGATCTTGGTCAATACCCGGAC
Found at i:45835 original size:14 final size:14
Alignment explanation
Indices: 45806--45842 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
45796 AGAAAAAGAA
45806 GAAGAAGAAATCCCC
1 GAAGAA-AAATCCCC
*
45821 GAAGAAAAGTCCCC
1 GAAGAAAAATCCCC
45835 GAAGAAAA
1 GAAGAAAA
45843 TGCCACGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.51, C:0.22, G:0.22, T:0.05
Consensus pattern (14 bp):
GAAGAAAAATCCCC
Found at i:47896 original size:18 final size:18
Alignment explanation
Indices: 47873--47907 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
47863 AGAAAAAGGC
*
47873 AATCAAAATCGCAATCAA
1 AATCAAAATCCCAATCAA
47891 AATCAAAATCCCAATCA
1 AATCAAAATCCCAATCA
47908 CAACCGGCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (18 bp):
AATCAAAATCCCAATCAA
Found at i:48219 original size:140 final size:140
Alignment explanation
Indices: 47967--48236 Score: 513
Period size: 140 Copynumber: 1.9 Consensus size: 140
47957 AAACGTTGTA
47967 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
* *
48032 TGATCTGTTCAGTTTTTATCACTTATTACACATCCATTTGAATATCGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATCCATTTGAATATCGCAACGCGAATTTGACTAT
48097 TATGTGTATT
131 TATGTGTATT
48107 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
1 TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
*
48172 TGATATGTTCAGTTGTTATCACTTATTACACATTCATTTGAATATCGCAACGCGAATTTGACTAT
66 TGATATGTTCAGTTGTTATCACTTATTACACATCCATTTGAATATCGCAACGCGAATTTGACTAT
48237 CGCAACGCGA
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
140 127 1.00
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (140 bp):
TTATGTGTAAACTTTTAACATTTTCAGTTAGGCATGTATTAGTAACTTGAGTTTGAACATTGCTA
TGATATGTTCAGTTGTTATCACTTATTACACATCCATTTGAATATCGCAACGCGAATTTGACTAT
TATGTGTATT
Found at i:48232 original size:20 final size:20
Alignment explanation
Indices: 48207--48525 Score: 260
Period size: 20 Copynumber: 16.9 Consensus size: 20
48197 TTACACATTC
*
48207 ATTTGAATATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
48227 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
48247 ATTTGATTATCGCAACTC-A
1 ATTTGACTATCGCAACGCGA
* * *
48266 A----A-AATTGCAATGCGA
1 ATTTGACTATCGCAACGCGA
* *
48281 ATTTGACTATCACAACACGA
1 ATTTGACTATCGCAACGCGA
** *
48301 ACATGACTATCGCAACGCCA
1 ATTTGACTATCGCAACGCGA
*
48321 A----A--ATTGCAACGCGA
1 ATTTGACTATCGCAACGCGA
*
48335 ATTTGTCTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
48355 ATTTGACTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* * *
48375 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
* *
48395 ATTTGACTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
* *
48415 ATTTGACTATCACAACGAGA
1 ATTTGACTATCGCAACGCGA
*
48435 A----A--ATCACAACGCGA
1 ATTTGACTATCGCAACGCGA
*
48449 ATTTGACTATAGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* *
48469 ATTTCAGTATCGCAACGCGA
1 ATTTGACTATCGCAACGCGA
* * *
48489 ATTTGATTATCGCAACGGGT
1 ATTTGACTATCGCAACGCGA
*
48509 ATTTGAATATCGCAACG
1 ATTTGACTATCGCAACG
48526 AGAAAATCGC
Statistics
Matches: 241, Mismatches: 40, Indels: 36
0.76 0.13 0.11
Matches are distributed among these distances:
14 30 0.12
15 3 0.01
16 2 0.01
18 1 0.00
19 3 0.01
20 202 0.84
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.26
Consensus pattern (20 bp):
ATTTGACTATCGCAACGCGA
Found at i:48312 original size:54 final size:54
Alignment explanation
Indices: 48218--48486 Score: 279
Period size: 54 Copynumber: 4.9 Consensus size: 54
48208 TTTGAATATC
* *
48218 GCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACTCAAAAATT
1 GCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCAAAAATT
* * * ** *
48272 GCAATGCGAATTTGACTATCACAACACGAACATGACTATCGCAACGCCAAAATT
1 GCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCAAAAATT
* * *
48326 GCAACGCGAATTTGTCTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATC
1 GCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGC-AA----A-AATT
* * * * * *
48386 GCAACGGGTATTTGACTATCGCAACGGGTATTTGACTATCACAACG-AGAAAATC
1 GCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCA-AAAATT
* * * *
48440 ACAACGCGAATTTGACTATAGCAACGCGAATTTCAGTATCGCAACGC
1 GCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGC
48487 GAATTTGATT
Statistics
Matches: 174, Mismatches: 33, Indels: 15
0.78 0.15 0.07
Matches are distributed among these distances:
54 127 0.73
55 2 0.01
58 1 0.01
59 2 0.01
60 42 0.24
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (54 bp):
GCAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCAAAAATT
Found at i:48447 original size:94 final size:94
Alignment explanation
Indices: 48347--48565 Score: 321
Period size: 94 Copynumber: 2.3 Consensus size: 94
48337 TTGTCTATCG
* * * *
48347 CAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACGGGTATTTGACTATCGCAACG
1 CAACGCGAATTTGACTATCGCAACGCGAATTTCAGTATCGCAACGCGAATTTGACTATCGCAACG
*
48412 GGTATTTGACTATCACAACGAGAAAATCA
66 GGTATTTGAATATCACAACGAGAAAATCA
* *
48441 CAACGCGAATTTGACTATAGCAACGCGAATTTCAGTATCGCAACGCGAATTTGATTATCGCAACG
1 CAACGCGAATTTGACTATCGCAACGCGAATTTCAGTATCGCAACGCGAATTTGACTATCGCAACG
* *
48506 GGTATTTGAATATCGCAACGAGAAAATCG
66 GGTATTTGAATATCACAACGAGAAAATCA
* * * *
48535 CAAAGCGTATTAGACTATCGCAACACGAATT
1 CAACGCGAATTTGACTATCGCAACGCGAATT
48566 GACTTTCACG
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 111 1.00
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (94 bp):
CAACGCGAATTTGACTATCGCAACGCGAATTTCAGTATCGCAACGCGAATTTGACTATCGCAACG
GGTATTTGAATATCACAACGAGAAAATCA
Found at i:48447 original size:114 final size:114
Alignment explanation
Indices: 48219--48525 Score: 365
Period size: 114 Copynumber: 2.7 Consensus size: 114
48209 TTGAATATCG
* * * * *
48219 CAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACTC-AA----A-AATTGCAATG
1 CAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACG
* * * * * * **
48278 CGAATTTGACTATCACAACACGAACATGACTATCGCAACGCCAAAATTG
66 GGTATTTGACTATCGCAACGCGAACATGACTATCACAACGACAAAATCA
*
48327 CAACGCGAATTTGTCTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACG
1 CAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACG
* * ** *
48392 GGTATTTGACTATCGCAACGGGTATTTGACTATCACAACGAGAAAATCA
66 GGTATTTGACTATCGCAACGCGAACATGACTATCACAACGACAAAATCA
* * *
48441 CAACGCGAATTTGACTATAGCAACGCGAATTTCAGTATCGCAACGCGAATTTGATTATCGCAACG
1 CAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACG
*
48506 GGTATTTGAATATCGCAACG
66 GGTATTTGACTATCGCAACG
48526 AGAAAATCGC
Statistics
Matches: 169, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
108 43 0.25
109 2 0.01
113 1 0.01
114 123 0.73
ACGTcount: A:0.34, C:0.22, G:0.19, T:0.25
Consensus pattern (114 bp):
CAACGCGAATTTGACTATCGCAACGCGAATTTGACTATCGCAACGCGAATTTGATTATCGCAACG
GGTATTTGACTATCGCAACGCGAACATGACTATCACAACGACAAAATCA
Found at i:48451 original size:74 final size:74
Alignment explanation
Indices: 48367--48505 Score: 188
Period size: 74 Copynumber: 1.9 Consensus size: 74
48357 TTGACTATCG
* * * * * * *
48367 CAACGCGAATTTGATTATCGCAACGGGTATTTGACTATCGCAACGGGTATTTGACTATCACAACG
1 CAACGCGAATTTGACTATAGCAACGCGAATTTCACTATCGCAACGCGAATTTGACTATCACAACG
48432 AGAAAATCA
66 AGAAAATCA
* * *
48441 CAACGCGAATTTGACTATAGCAACGCGAATTTCAGTATCGCAACGCGAATTTGATTATCGCAACG
1 CAACGCGAATTTGACTATAGCAACGCGAATTTCACTATCGCAACGCGAATTTGACTATCACAACG
48506 GGTATTTGAA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
74 55 1.00
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (74 bp):
CAACGCGAATTTGACTATAGCAACGCGAATTTCACTATCGCAACGCGAATTTGACTATCACAACG
AGAAAATCA
Found at i:48735 original size:14 final size:14
Alignment explanation
Indices: 48698--48736 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
48688 TCAATATTAA
*
48698 ACAAATCAACTTTT
1 ACAAATCAATTTTT
48712 ACAAATCAATTTTT
1 ACAAATCAATTTTT
*
48726 ATAAATCAATT
1 ACAAATCAATT
48737 AAACAAGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (14 bp):
ACAAATCAATTTTT
Found at i:49951 original size:42 final size:42
Alignment explanation
Indices: 49867--49951 Score: 100
Period size: 42 Copynumber: 2.0 Consensus size: 42
49857 TCAATCAACA
** **
49867 ATAGGGGACTCTTGAACGGTGGGAGAGGACTCTTGAGGGATG
1 ATAGGGGACTCTTGAACGCAGGGAGAGGACTCTTGAACGATG
* *
49909 ATAGGGGCCTCTTGAACGACAGGG-GAGGCCTCTTGAACGATG
1 ATAGGGGACTCTTGAACG-CAGGGAGAGGACTCTTGAACGATG
49951 A
1 A
49952 CAGGTGAGTC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
42 33 0.92
43 3 0.08
ACGTcount: A:0.25, C:0.16, G:0.39, T:0.20
Consensus pattern (42 bp):
ATAGGGGACTCTTGAACGCAGGGAGAGGACTCTTGAACGATG
Found at i:50477 original size:20 final size:20
Alignment explanation
Indices: 50441--50505 Score: 80
Period size: 20 Copynumber: 3.4 Consensus size: 20
50431 GAAACTTAAA
50441 ATCGCAACACG--AATGACT
1 ATCGCAACACGAAAATGACT
50459 ATCGCAACACGAAAATGACT
1 ATCGCAACACGAAAATGACT
* **
50479 ATCGCAACGCGAATTTGACT
1 ATCGCAACACGAAAATGACT
*
50499 ATTGCAA
1 ATCGCAA
50506 TGAGAGAATC
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.27
20 30 0.73
ACGTcount: A:0.38, C:0.25, G:0.17, T:0.20
Consensus pattern (20 bp):
ATCGCAACACGAAAATGACT
Found at i:52460 original size:19 final size:19
Alignment explanation
Indices: 52410--52460 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
52400 GCAACGCGAG
52410 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
* *
52429 AATCACAACGCGAAACT-AA
1 AATCGCAATGCGAAA-TGAA
*
52448 AATCGCATTGCGA
1 AATCGCAATGCGA
52461 TTCTGTGTTG
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 25 0.96
20 1 0.04
ACGTcount: A:0.45, C:0.22, G:0.18, T:0.16
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:52866 original size:22 final size:22
Alignment explanation
Indices: 52839--52880 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
52829 GAGATAGACG
52839 GATTTCG-CAGGAGATGGGGATA
1 GATTTCGTC-GGAGATGGGGATA
52861 GATTTCGTCGGAGATGGGGA
1 GATTTCGTCGGAGATGGGGA
52881 CGGATGTCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.24, C:0.10, G:0.43, T:0.24
Consensus pattern (22 bp):
GATTTCGTCGGAGATGGGGATA
Found at i:53081 original size:20 final size:20
Alignment explanation
Indices: 53056--53142 Score: 120
Period size: 20 Copynumber: 4.3 Consensus size: 20
53046 GAAAATTGCA
*
53056 TTGCGATAGTCAGCATCGCG
1 TTGCGATAGTCAGAATCGCG
**
53076 TTGCGATAGTCAGAATCTTG
1 TTGCGATAGTCAGAATCGCG
53096 TTGCGATAGTCAGAATCGCG
1 TTGCGATAGTCAGAATCGCG
* * *
53116 TTGCGATAGTCATATTCGCA
1 TTGCGATAGTCAGAATCGCG
53136 TTGCGAT
1 TTGCGAT
53143 TTACATATTC
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 59 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (20 bp):
TTGCGATAGTCAGAATCGCG
Found at i:53140 original size:40 final size:40
Alignment explanation
Indices: 53053--53203 Score: 126
Period size: 40 Copynumber: 3.7 Consensus size: 40
53043 TTTGAAAATT
*
53053 GCATTGCGATAGTCAGCATCGCGTTGCGATAGTCAGAATC
1 GCATTGCGATAGTCAGAATCGCGTTGCGATAGTCAGAATC
*** * *
53093 TTGTTGCGATAGTCAGAATCGCGTTGCGATAGTCATATTC
1 GCATTGCGATAGTCAGAATCGCGTTGCGATAGTCAGAATC
* * * * * *
53133 GCATTGCGAT-TTACATATTCGCATTGC-AGTAGTCGGAAAATG
1 GCATTGCGATAGT-CAGAATCGCGTTGCGA-TAGTC--AGAATC
* *
53175 GCAATGCGATAGTCAAAATCGCGTTGCGA
1 GCATTGCGATAGTCAGAATCGCGTTGCGA
53204 ATCTGGAAAC
Statistics
Matches: 84, Mismatches: 21, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
39 2 0.02
40 57 0.68
42 23 0.27
43 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (40 bp):
GCATTGCGATAGTCAGAATCGCGTTGCGATAGTCAGAATC
Found at i:53566 original size:2 final size:2
Alignment explanation
Indices: 53559--53602 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
53549 ACAGATTAAC
53559 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
53601 AT
1 AT
53603 TATTTTTCAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:57325 original size:20 final size:20
Alignment explanation
Indices: 57300--57349 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
57290 ACAGTAGCAA
* *
57300 TACTATTTATACATTACATG
1 TACTATTCATACAGTACATG
57320 TACTATTCATACAGTACA-G
1 TACTATTCATACAGTACATG
*
57339 TAATATTCATA
1 TACTATTCATA
57350 AAAACATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.38, C:0.16, G:0.06, T:0.40
Consensus pattern (20 bp):
TACTATTCATACAGTACATG
Found at i:57608 original size:18 final size:19
Alignment explanation
Indices: 57561--57617 Score: 71
Period size: 18 Copynumber: 2.9 Consensus size: 19
57551 ATGTTTAATG
*
57561 AAAAATATATCAATTGTTA
1 AAAAAGATATCAATTGTTA
57580 ACAAAAGGATATCAATTGTT-
1 A-AAAA-GATATCAATTGTTA
*
57600 AAAAAGATACCAATTGTT
1 AAAAAGATATCAATTGTT
57618 GTAAAATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 12 0.35
19 5 0.15
20 5 0.15
21 12 0.35
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.32
Consensus pattern (19 bp):
AAAAAGATATCAATTGTTA
Found at i:59454 original size:64 final size:66
Alignment explanation
Indices: 59384--59524 Score: 196
Period size: 65 Copynumber: 2.2 Consensus size: 66
59374 TTTTTCCTTT
* * * * * *
59384 AGGGGGTATTGATACCCTACT-GTGGGTATCGGTACCCTTATGACATTCTGTAATTTT-TCGTTC
1 AGGGGGTATCGACACCCTACTGGGGGGTATCGGTACCCCTATGACATTATGAAATTTTCTCGTTC
59447 A
66 A
*
59448 AGGGGGTATCGACACCCTACTGGGGGGTATCGGTACCCCTATGACATTATGAAATTTTCTCGTTT
1 AGGGGGTATCGACACCCTACTGGGGGGTATCGGTACCCCTATGACATTATGAAATTTTCTCGTTC
59513 A
66 A
*
59514 AGAGGGTATCG
1 AGGGGGTATCG
59525 GTACCTGTTG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
64 19 0.28
65 32 0.48
66 16 0.24
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (66 bp):
AGGGGGTATCGACACCCTACTGGGGGGTATCGGTACCCCTATGACATTATGAAATTTTCTCGTTC
A
Found at i:62932 original size:14 final size:16
Alignment explanation
Indices: 62915--62951 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
62905 CTATCAATAT
*
62915 TCTTATCATT-TAT-A
1 TCTTATAATTATATCA
62929 TCTTATAATTATATCA
1 TCTTATAATTATATCA
62945 TCTTATA
1 TCTTATA
62952 TCTATTCTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 9 0.45
15 3 0.15
16 8 0.40
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (16 bp):
TCTTATAATTATATCA
Found at i:63271 original size:23 final size:23
Alignment explanation
Indices: 63245--63328 Score: 123
Period size: 23 Copynumber: 3.7 Consensus size: 23
63235 CTCGTATAAA
*
63245 TGCACCAAAGTGTCACGTAGAAT
1 TGCACCAAAGTGCCACGTAGAAT
*
63268 TGCACTAAAGTGCCACGTAGAAT
1 TGCACCAAAGTGCCACGTAGAAT
* *
63291 TGCACCGAAGTGCCGCGTAGAAT
1 TGCACCAAAGTGCCACGTAGAAT
*
63314 TGCACCGAAGTGCCA
1 TGCACCAAAGTGCCA
63329 TATAAAATGT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 55 1.00
ACGTcount: A:0.31, C:0.25, G:0.25, T:0.19
Consensus pattern (23 bp):
TGCACCAAAGTGCCACGTAGAAT
Found at i:66899 original size:19 final size:20
Alignment explanation
Indices: 66854--66904 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
66844 AGCAGTGTCG
*
66854 ATACTATTTATACAATATCA
1 ATACTATTCATACAATATCA
* *
66874 TTACTATTCATACAGTA-CA
1 ATACTATTCATACAATATCA
66893 ATACTATTCATA
1 ATACTATTCATA
66905 AAAACATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 13 0.48
20 14 0.52
ACGTcount: A:0.41, C:0.18, G:0.02, T:0.39
Consensus pattern (20 bp):
ATACTATTCATACAATATCA
Found at i:72552 original size:31 final size:32
Alignment explanation
Indices: 72515--72576 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
72505 TCGAATAGTG
* *
72515 TGAATGATATATA-TTTTCAGGTCGGGTCGGA
1 TGAATGATATAAAGTTTTCAGGTAGGGTCGGA
*
72546 TGAATGATGTAAAGTTTTCAGGTAGGGTCGG
1 TGAATGATATAAAGTTTTCAGGTAGGGTCGG
72577 GTTGGCCGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 11 0.41
32 16 0.59
ACGTcount: A:0.26, C:0.08, G:0.32, T:0.34
Consensus pattern (32 bp):
TGAATGATATAAAGTTTTCAGGTAGGGTCGGA
Done.