genome.fa.s1670.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001670.1 Hibiscus syriacus cultivar Beakdansim tig00003342_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79220

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5007--5072	31	2.1	31	82	0	78	18	43	19	18	1.88
5030--5066	18	2.1	18	89	0	56	13	45	24	16	1.83
5015--5048	13	2.6	13	85	0	50	14	47	20	17	1.83
7546--7664	24	5.0	24	82	4	141	25	14	21	39	1.90
7780--7874	43	2.2	43	92	0	154	17	9	34	37	1.83
9985--10016	13	2.5	13	94	0	55	15	43	25	15	1.86
9993--10034	18	2.3	18	87	0	57	19	45	21	14	1.85
12605--12723	24	5.0	24	88	4	168	26	15	19	39	1.91
12839--12933	43	2.2	43	90	0	154	15	10	34	38	1.82
15054--15085	13	2.5	13	94	0	55	15	43	25	15	1.86
17649--17767	24	5.0	24	88	4	168	26	15	19	39	1.91
17883--17977	43	2.2	43	88	0	145	15	9	35	38	1.80
20023--20086	24	2.7	24	80	0	74	50	20	10	18	1.77
21931--21970	19	2.1	19	90	0	62	27	35	20	17	1.95
23555--23607	19	2.8	19	91	0	88	22	15	30	32	1.94
24286--24329	20	2.2	21	88	8	65	59	20	0	20	1.39
24328--24358	2	15.5	2	100	0	62	51	0	0	48	1.00
41892--41988	49	2.0	49	97	0	185	43	19	14	22	1.87
45034--45066	11	2.8	12	90	9	50	69	0	27	3	1.03
49330--49382	20	2.7	20	84	0	70	30	22	13	33	1.92
49604--49657	18	2.8	20	83	10	76	44	12	14	27	1.82
51945--51985	22	2.0	20	85	9	55	12	9	39	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57901--57983	38	2.2	38	86	4	114	33	20	13	32	1.91
60423--60461	20	2.0	20	89	0	60	23	10	20	46	1.81
60619--60653	18	1.9	18	88	0	52	40	14	17	28	1.88
64806--64857	19	2.7	19	100	0	104	28	17	30	23	1.97
64909--64967	20	2.7	21	89	10	84	30	20	20	28	1.97
65785--65972	18	10.4	18	92	0	304	17	22	31	27	1.97
67781--67811	2	15.5	2	93	0	53	48	48	3	0	1.17
67996--68102	24	4.5	24	82	6	128	48	15	13	22	1.80
67996--68116	24	5.0	23	75	16	88	48	15	14	21	1.80
75477--75514	20	1.9	19	89	5	58	18	28	13	39	1.88

Tables:   1

The End!