Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001671.1 Hibiscus syriacus cultivar Beakdansim tig00003344_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55037

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
186--273
29
3.0
28
85
6
113
32
7
23
35
1.84
5268--5330
28
2.2
27
83
8
72
42
4
0
52
1.22
9210--9255
20
2.3
20
96
0
83
43
23
2
30
1.66
15801--15848
21
2.3
21
92
0
78
50
4
0
45
1.21
15799--15853
21
2.4
23
79
14
69
54
3
0
41
1.18
16292--16345
22
2.5
22
84
0
81
35
14
11
38
1.82
30511--30539
15
1.9
15
100
0
58
3
62
27
6
1.37
32385--32424
20
2.0
21
90
5
64
37
22
12
27
1.90
37795--37853
20
2.9
19
80
14
57
72
3
8
15
1.21
40613--40661
9
5.2
9
85
4
53
20
0
0
79
0.73
40613--40658
10
4.8
10
86
7
60
21
0
0
78
0.76
40618--40656
10
3.7
11
90
10
64
23
0
0
76
0.78
40618--40657
21
2.0
20
95
5
71
25
0
0
75
0.81
44431--45278
106
8.0
106
92
1
1346
33
25
18
22
1.97
46205--46254
4
13.8
4
91
8
65
24
0
0
76
0.80
47445--47470
10
2.6
10
100
0
52
15
0
0
84
0.62
48214--48294
40
2.0
41
90
4
128
33
24
16
25
1.96
48451--48502
21
2.5
21
100
0
104
9
26
28
34
1.88
48598--48653
15
3.6
15
79
9
67
42
12
12
32
1.80
48601--48651
17
3.1
17
77
11
61
43
11
9
35
1.75
48824--48876
21
2.5
21
93
0
88
28
28
22
20
1.99
49072--49126
13
4.2
13
75
13
58
49
12
3
34
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49112--49210
33
3.0
33
94
1
164
45
15
7
32
1.73
49205--49244
21
1.9
21
94
0
71
47
7
15
30
1.72
51988--52020
15
2.1
16
94
5
59
33
36
6
24
1.80
52873--53060
68
2.7
72
79
13
228
43
23
9
22
1.83
53376--53438
28
2.2
28
97
0
117
46
22
14
17
1.84

Tables:   1

The End!