genome.fa.s1672.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001672.1 Hibiscus syriacus cultivar Beakdansim tig00003345_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88724

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294--431	38	3.7	37	80	3	152	35	21	10	32	1.87
288--431	75	1.9	75	85	2	200	36	20	9	33	1.86
1487--1551	19	3.4	19	70	4	67	44	9	4	41	1.57
1482--1560	39	2.0	39	100	0	158	43	10	5	41	1.60
9715--9751	7	5.1	7	96	3	65	0	40	0	59	0.97
10938--11009	18	4.0	18	96	0	117	19	20	29	30	1.97
13823--13886	19	3.3	18	74	20	58	46	6	4	42	1.49
17365--17496	42	3.1	42	67	26	125	25	18	9	46	1.80
17365--17536	84	2.0	84	98	0	335	25	19	9	45	1.81
17402--17536	42	3.2	42	67	26	122	26	20	8	44	1.80
18529--18585	30	1.9	30	92	0	96	40	7	7	45	1.58
18599--19428	54	15.4	54	70	19	442	53	12	0	34	1.41
18611--18659	22	2.2	22	85	3	62	55	12	0	32	1.37
18668--18814	26	5.7	26	70	21	96	54	16	0	29	1.42
18614--18929	80	3.9	80	91	3	481	53	13	0	33	1.40
18665--18739	22	3.2	23	71	17	73	54	14	0	30	1.41
18742--18813	22	3.0	23	75	15	83	55	18	0	26	1.42
18857--18905	22	2.2	22	85	3	62	55	12	0	32	1.37
18909--18951	22	2.0	22	100	0	86	51	9	0	39	1.34
18882--18960	22	4.4	18	67	25	51	53	10	0	36	1.35
18911--18959	22	2.2	22	88	3	71	55	10	0	34	1.34
18914--19219	80	3.8	80	96	0	540	53	14	0	31	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18965--19039	22	3.2	23	75	17	82	54	17	0	28	1.43
19125--19199	22	3.2	22	71	14	69	56	17	0	26	1.42
19205--19253	22	2.2	22	85	3	62	55	12	0	32	1.37
18614--19331	380	1.9	379	87	5	1047	53	13	0	33	1.42
19311--19413	22	4.5	22	71	7	80	52	7	0	39	1.30
19356--19473	15	7.5	15	82	13	148	52	2	0	44	1.14
19302--19458	69	2.3	67	89	5	228	52	5	0	42	1.23
22113--22158	20	2.3	20	92	3	76	36	28	0	34	1.58
23299--23359	31	2.0	31	83	0	77	32	16	8	42	1.78
25558--25602	17	2.7	16	86	6	54	35	2	2	60	1.22
25567--25610	16	2.8	16	83	12	56	34	0	4	61	1.16
31814--31853	21	1.9	21	85	10	55	27	17	0	55	1.43
32244--32317	18	3.9	18	89	10	121	25	32	22	18	1.97
32241--32317	39	2.0	39	100	0	154	25	31	22	20	1.98
37488--37561	18	3.9	18	89	10	121	25	32	22	18	1.97
37485--37561	39	2.0	39	100	0	154	25	31	22	20	1.98
38270--38394	64	1.9	65	84	9	166	24	20	19	36	1.95
40601--40649	25	1.9	26	83	4	64	34	10	14	40	1.79
63655--63751	21	4.6	23	71	13	66	18	11	36	34	1.87
64071--64158	42	2.1	42	82	4	106	20	32	17	29	1.95
64094--64158	21	3.1	21	75	0	76	18	33	18	29	1.95
65472--65504	13	2.4	14	90	5	50	27	0	21	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65483--65616	62	2.1	63	84	4	173	26	1	17	54	1.52
68017--68070	24	2.2	24	90	0	81	42	20	16	20	1.89
69025--69094	20	3.5	20	68	14	63	35	15	20	28	1.93
69110--69152	20	2.2	20	95	0	77	23	20	20	34	1.96
77742--77817	36	2.1	37	87	7	111	48	1	2	47	1.24
79243--79317	14	5.3	14	83	3	96	12	12	16	60	1.60
79507--79552	10	4.6	10	91	0	74	19	8	8	63	1.49
79542--79601	13	4.8	13	72	15	54	10	11	18	60	1.58
79533--79644	37	3.0	37	86	2	143	12	11	16	58	1.62
79710--79744	16	2.2	16	94	0	61	8	8	22	60	1.54
82160--82217	12	4.8	12	84	0	71	53	18	13	13	1.73
82196--82254	24	2.5	24	77	0	73	44	16	18	20	1.87
84728--84759	15	2.2	15	94	5	57	25	28	34	12	1.92
84749--84817	18	4.1	18	78	17	94	13	21	49	15	1.79
84728--84759	7	4.4	7	92	7	55	25	28	34	12	1.92
84749--84815	31	2.2	31	97	0	125	13	20	49	16	1.79
84762--84798	13	2.8	13	91	0	65	13	21	48	16	1.80
86953--87010	12	4.8	12	80	0	62	51	18	13	15	1.76
86965--87047	24	3.5	24	76	3	78	44	18	16	20	1.87

Tables:   1

The End!