genome.fa.s1673.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001673.1 Hibiscus syriacus cultivar Beakdansim tig00003347_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58975

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3725--3769	23	1.9	23	86	13	65	28	4	15	51	1.63
6082--6894	410	2.0	413	89	1	1267	44	16	19	19	1.87
18035--18237	110	1.8	110	80	0	244	31	22	6	39	1.80
18125--18516	81	4.8	81	88	1	552	31	22	11	34	1.89
18456--18729	68	4.0	68	88	0	361	28	25	14	30	1.95
19015--19176	60	2.7	59	85	2	200	35	18	10	35	1.85
19045--19176	59	2.2	58	86	4	156	35	20	12	31	1.89
19493--19683	95	2.0	95	83	2	240	25	23	15	35	1.94
33114--33182	21	3.6	19	77	16	63	28	27	15	27	1.96
33213--33282	36	1.9	36	82	5	88	25	27	20	27	1.99
33232--33286	20	3.0	20	76	12	64	23	30	18	27	1.97
33384--33423	20	1.9	21	85	10	55	40	37	10	12	1.77
33638--33706	34	2.1	33	83	2	84	36	15	24	23	1.94
34581--35102	135	3.8	135	80	5	514	35	20	18	25	1.95
34581--35102	136	3.8	135	80	4	530	35	20	18	25	1.95
36898--36935	20	1.9	20	88	0	58	36	10	28	23	1.88
37531--37805	45	6.0	44	78	12	277	41	11	23	23	1.87
37564--37667	55	1.9	55	87	0	154	41	12	25	21	1.88
37637--37802	86	1.9	85	88	1	251	42	10	22	23	1.85
40732--40775	18	2.5	18	88	3	63	34	13	4	47	1.63
40834--40904	17	4.1	17	87	5	81	38	14	8	39	1.76
51034--51210	58	3.1	57	77	8	180	33	11	18	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51309--51742	211	2.1	210	80	3	480	31	13	17	37	1.88
51731--51840	41	2.6	42	81	8	118	30	18	18	33	1.94
51501--54630	291	10.8	292	81	6	3383	31	15	18	35	1.92
53286--53441	58	2.7	55	79	8	152	32	11	19	36	1.87
53192--54630	293	5.0	293	83	3	1701	30	15	18	35	1.93
54641--57590	292	10.1	292	80	7	2845	30	15	19	34	1.92
56324--56412	41	2.1	42	81	6	101	29	23	15	31	1.95
57307--57445	58	2.4	55	75	12	120	38	11	15	34	1.84
57363--57817	247	1.8	248	86	2	664	32	14	19	33	1.92
57068--58080	539	1.9	534	82	6	1296	32	14	18	34	1.92
57602--58969	292	4.7	291	79	8	1328	31	14	18	34	1.92
58587--58632	20	2.3	20	92	0	74	30	28	15	26	1.96

Tables:   1

The End!