genome.fa.s1675.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001675.1 Hibiscus syriacus cultivar Beakdansim tig00003350_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63216

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1001--1043	16	2.7	16	85	0	59	20	27	23	27	1.99
1601--1671	27	2.6	27	86	4	90	45	11	14	29	1.79
3164--3238	31	2.4	31	84	0	96	14	25	28	32	1.95
3185--3267	31	2.7	31	82	0	94	14	21	31	32	1.93
5585--5940	46	7.7	46	90	1	525	41	13	21	23	1.88
9742--9867	64	2.0	64	98	0	243	30	13	18	38	1.89
10008--10157	46	3.3	46	82	3	203	44	12	18	24	1.85
14477--14818	37	9.0	37	71	13	178	22	19	22	35	1.96
14360--14661	116	2.6	117	90	3	466	23	18	22	35	1.96
14499--14782	79	3.7	78	73	11	278	23	19	23	34	1.96
14461--14818	153	2.3	153	92	1	592	22	18	22	35	1.96
14615--14904	116	2.5	116	85	3	388	23	19	21	35	1.96
14360--14892	269	2.0	270	89	1	809	23	19	21	35	1.96
16063--16284	119	1.9	119	91	0	363	26	26	14	32	1.95
26936--26972	17	2.1	18	90	5	58	37	0	5	56	1.22
31427--31578	55	2.8	55	86	3	200	36	13	18	31	1.89
31754--32335	68	8.7	68	90	4	918	29	14	25	29	1.95
31754--32335	192	2.9	196	90	6	848	29	14	25	29	1.95
31788--32308	260	2.0	260	94	0	907	29	15	25	29	1.96
32285--32492	81	2.6	81	94	0	362	33	14	24	27	1.95
32455--32531	39	2.0	39	89	0	118	24	14	27	33	1.94
32374--32609	120	2.0	120	95	0	427	30	14	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32494--32884	81	4.8	81	89	0	595	34	12	23	29	1.92
32292--32991	362	2.0	353	87	3	997	34	13	23	28	1.93
32494--32884	161	2.4	162	92	0	631	34	12	23	29	1.92
32853--32913	29	2.1	29	93	0	104	42	9	24	22	1.84
32772--33066	110	2.7	111	88	4	436	37	11	22	27	1.89
38805--38863	20	2.9	20	80	9	66	11	25	37	25	1.90
44611--44699	22	4.1	22	86	4	128	17	23	41	16	1.90
44611--44699	44	2.1	44	91	4	146	17	23	41	16	1.90
45125--45176	19	2.7	20	90	6	88	36	5	23	34	1.79
45211--45257	20	2.3	20	82	7	51	29	21	25	23	1.99
47123--47173	26	2.0	26	84	3	68	31	9	9	49	1.69
48355--48402	16	3.0	16	71	0	51	45	29	8	16	1.76
48355--48427	32	2.3	33	81	9	89	46	26	9	17	1.79
48609--48677	32	2.2	32	81	0	75	40	18	11	28	1.86
48622--48708	32	2.7	32	87	3	113	39	22	12	25	1.90
49216--49268	22	2.6	21	82	11	65	60	0	1	37	1.08
49223--49268	22	2.1	22	88	4	67	60	0	2	36	1.09
50006--50068	26	2.4	27	94	2	110	36	0	3	60	1.13
50024--50080	27	2.1	27	83	0	69	49	0	3	47	1.18
52018--52050	15	2.3	15	89	5	50	15	12	0	72	1.12
61069--61106	20	1.9	20	88	0	58	13	26	34	26	1.93

Tables:   1

The End!