Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001676.1 Hibiscus syriacus cultivar Beakdansim tig00003353_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63699

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4300--4349
26
1.9
26
95
0
91
44
2
0
54
1.11
14288--14423
11
12.3
11
75
18
90
75
0
2
20
0.97
14288--14423
18
8.2
16
70
19
68
75
0
2
20
0.97
14289--14373
8
10.9
8
73
16
72
72
0
1
25
0.91
14385--14426
10
4.3
10
96
3
77
90
0
0
9
0.45
14287--14425
16
8.2
16
66
21
54
76
0
2
20
0.96
15699--15968
38
7.6
37
77
18
247
41
7
3
47
1.48
15772--15835
26
2.5
26
92
2
103
45
7
3
43
1.48
15797--15930
34
3.8
33
84
7
144
41
7
2
47
1.47
17095--17345
82
3.0
82
83
4
297
27
17
18
36
1.94
17070--17362
85
3.5
85
83
4
335
28
17
18
35
1.94
18772--18973
99
2.0
99
91
0
323
30
17
16
34
1.93
20849--21081
40
5.9
39
82
7
258
40
5
3
50
1.42
20838--21141
79
3.9
77
75
14
270
42
6
2
48
1.44
20978--21034
11
5.1
11
77
12
53
45
1
0
52
1.11
21171--21208
14
2.5
16
79
16
53
42
7
0
50
1.31
28942--28984
19
2.1
21
83
8
54
20
9
20
48
1.77
30559--30621
2
31.5
2
100
0
126
50
0
0
49
1.00
40506--40632
50
2.5
51
96
1
229
61
3
5
29
1.34
42169--42228
31
1.9
31
96
0
111
51
18
5
25
1.66
43671--43710
21
1.9
21
89
0
62
37
17
20
25
1.94
56744--56780
15
2.3
17
86
9
51
62
0
0
37
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56896--57008
51
2.2
51
95
0
199
30
4
43
21
1.72
62067--62127
32
1.9
32
100
0
122
42
16
11
29
1.83

Tables:   1

The End!