Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001678.1 Hibiscus syriacus cultivar Beakdansim tig00003355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107383

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
273--318
19
2.3
20
85
3
58
41
4
15
39
1.67
282--320
20
2.0
19
90
5
60
38
5
12
43
1.65
1986--2035
18
2.9
17
80
11
57
60
0
2
38
1.09
5069--5100
2
16.0
2
100
0
64
50
0
0
50
1.00
11719--11748
2
15.0
2
92
0
51
50
3
0
46
1.18
11942--11966
11
2.3
11
100
0
50
12
20
8
60
1.57
13413--13446
17
2.0
17
100
0
68
35
5
5
52
1.50
14653--14849
94
2.1
95
94
2
342
28
23
10
37
1.88
25321--25352
13
2.4
14
94
5
57
59
3
0
37
1.13
25539--25607
23
3.0
24
85
6
97
36
24
23
15
1.94
27605--27643
19
2.1
19
85
0
51
56
10
12
20
1.65
28165--28190
6
4.3
6
100
0
52
34
0
15
50
1.45
46723--46773
23
2.3
23
82
3
59
23
3
7
64
1.37
50237--50288
3
17.3
3
95
0
95
32
0
1
65
1.04
50334--50378
20
2.2
20
96
0
81
17
33
4
44
1.69
53881--53917
11
3.2
12
81
11
51
86
5
8
0
0.70
53856--53917
16
3.7
16
79
14
63
80
4
12
1
0.94
53876--53927
16
3.3
15
76
7
50
80
7
11
0
0.89
55168--55926
120
6.3
120
85
2
851
32
23
17
25
1.97
56029--56213
40
4.4
41
76
12
153
24
34
18
22
1.96
55941--56188
46
5.7
45
74
14
187
25
32
18
23
1.97
55926--56226
129
2.3
129
86
4
401
25
33
18
23
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
56112--56184
25
3.1
25
64
22
66
23
32
17
26
1.97
56627--56914
146
2.0
146
81
0
342
34
20
24
21
1.97
57147--57213
29
2.3
28
80
12
73
14
8
14
61
1.56
57166--57270
30
3.6
29
77
11
79
18
10
13
58
1.63
57648--57996
180
1.9
180
98
0
680
35
16
6
41
1.74
59937--59974
6
6.5
6
87
6
60
15
0
0
84
0.63
62220--62390
96
1.8
91
85
6
234
53
4
12
29
1.56
62392--62458
29
2.3
29
82
2
82
56
10
8
23
1.61
64504--64542
17
2.3
17
86
8
53
74
2
2
20
1.06
64499--64540
13
3.2
13
86
0
57
78
2
2
16
0.96
64570--64762
36
5.3
36
86
8
252
46
9
2
41
1.49
64570--64765
71
2.8
72
87
8
269
46
9
2
41
1.48
66020--66049
15
2.0
15
100
0
60
40
20
33
6
1.78
68089--68163
20
3.7
20
73
3
60
25
20
1
53
1.53
88444--88480
3
12.3
3
100
0
74
35
0
0
64
0.94
89873--89921
16
2.8
20
71
28
56
57
0
0
42
0.99
89876--89911
16
2.4
16
90
9
58
55
0
0
44
0.99
98079--98247
55
3.1
55
87
0
232
37
13
23
25
1.92
98612--98712
22
4.6
22
87
2
141
32
16
12
37
1.87
98612--98712
44
2.3
44
91
3
159
32
16
12
37
1.87
99370--100054
116
5.9
116
92
1
1102
30
20
21
27
1.98
99723--99781
21
2.8
21
72
15
59
35
25
22
16
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99370--100054
231
2.9
232
92
1
1120
30
20
21
27
1.98
99370--100054
347
2.0
349
92
1
1149
30
20
21
27
1.98
100008--100181
78
2.2
78
91
0
276
33
17
18
29
1.95
100435--100490
3
19.3
3
89
7
89
37
0
0
62
0.95
100435--100490
23
2.4
23
96
0
103
37
0
0
62
0.95
103359--103417
27
2.2
26
84
3
73
42
6
35
15
1.73
104288--104316
14
2.0
15
93
6
51
27
6
6
58
1.50

Tables:   1

The End!