genome.fa.s1679.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001679.1 Hibiscus syriacus cultivar Beakdansim tig00003357_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79969

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9537--9590	27	2.0	27	100	0	108	22	18	18	40	1.91
12642--12705	21	3.0	21	93	0	101	23	17	21	37	1.94
21820--21866	16	3.0	16	78	12	53	17	21	0	61	1.34
24953--25002	24	2.1	24	92	7	84	32	14	12	42	1.82
29331--29457	48	2.8	46	84	8	161	30	22	7	38	1.83
29509--29540	15	2.1	15	94	0	55	50	21	12	15	1.77
33675--33742	30	2.2	30	84	2	82	45	8	14	30	1.76
35322--35370	24	2.0	24	96	0	89	32	14	12	40	1.83
36588--36637	24	2.1	24	84	0	64	22	12	18	48	1.80
36764--36818	24	2.3	24	75	12	58	20	20	18	41	1.90
37488--37526	17	2.3	17	86	0	51	66	2	2	28	1.18
38092--38410	174	1.8	175	90	2	516	46	9	6	37	1.63
41262--41365	50	2.1	50	94	0	181	23	14	34	27	1.93
41488--41528	18	2.3	18	87	4	57	29	7	2	60	1.36
43794--43878	35	2.5	33	78	14	91	25	8	10	55	1.62
47181--47214	12	2.8	12	90	4	50	64	5	2	26	1.30
48573--48920	191	1.8	190	87	4	522	45	8	5	40	1.58
52165--52267	31	3.5	29	84	11	131	39	11	12	35	1.80
52354--52451	29	3.3	28	75	13	81	41	13	10	34	1.78
52323--52459	31	4.6	29	73	13	100	42	11	10	35	1.77
53039--53149	57	1.9	57	85	3	152	37	15	17	29	1.90
53760--53788	14	2.1	14	100	0	58	0	6	6	86	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54602--54648	3	15.7	3	79	16	53	34	0	2	63	1.06
54602--54652	13	3.9	13	82	7	68	35	0	1	62	1.06
54762--54890	60	2.2	60	92	2	215	27	44	12	16	1.83
59830--59888	31	1.9	31	86	3	84	69	8	18	3	1.28
59830--59888	15	3.9	15	90	2	82	69	8	18	3	1.28
61140--61187	24	2.0	24	100	0	96	45	8	4	41	1.53
61262--61375	36	3.2	36	89	2	131	28	17	14	40	1.88
61292--61399	36	3.0	36	91	0	126	27	21	12	38	1.89
61407--61575	66	2.6	65	81	4	191	23	21	14	40	1.90
61580--61936	131	2.7	129	81	3	392	26	29	17	26	1.98
62128--62177	3	16.7	3	76	15	50	36	0	4	60	1.16
62128--62170	11	4.0	10	85	11	50	34	0	2	62	1.08
62129--62181	16	3.2	16	80	17	56	37	0	3	58	1.16
62140--62177	13	3.2	12	82	10	51	34	0	5	60	1.19
66163--66192	13	2.4	13	94	5	53	26	30	0	43	1.55
68900--68928	15	2.0	15	93	6	51	0	20	3	75	0.94
73559--73616	23	2.6	23	86	2	73	18	20	12	48	1.80
77428--77464	19	1.9	19	94	0	65	32	29	16	21	1.95
77494--77602	20	5.4	20	84	6	148	29	25	19	25	1.98
77494--77625	61	2.1	62	91	1	212	32	24	18	25	1.97
77774--77815	22	1.9	22	100	0	84	26	45	9	19	1.80
78189--78305	20	6.2	20	73	11	86	17	17	23	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78204--78306	53	1.9	54	86	2	145	15	17	24	42	1.88
78189--78327	73	1.9	73	88	2	208	20	15	21	41	1.90

Tables:   1

The End!