genome.fa.s168.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000168.1 Hibiscus syriacus cultivar Beakdansim tig00000297_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84384

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
617--658	20	2.1	20	95	0	75	30	7	19	42	1.78
673--715	22	2.0	21	86	8	61	25	0	0	74	0.82
4138--4230	12	7.8	12	71	9	73	48	17	15	19	1.81
4138--4230	24	3.9	24	80	2	89	48	17	15	19	1.81
4170--4244	24	3.1	24	77	7	73	46	17	17	18	1.84
4134--4227	48	2.0	48	87	4	136	48	15	14	20	1.80
5352--5387	18	2.0	18	88	0	54	30	16	0	52	1.44
6689--6733	13	3.5	13	84	0	63	17	20	44	17	1.87
10336--10395	21	2.9	21	82	0	66	35	1	18	45	1.60
16415--16478	30	2.1	30	82	5	76	37	15	1	45	1.56
16424--16491	30	2.4	27	74	21	68	33	11	1	52	1.47
16503--16640	29	4.7	29	86	1	177	34	7	1	57	1.35
16503--16754	60	4.2	60	74	6	190	34	7	1	56	1.35
16711--16829	35	3.4	35	81	4	132	33	1	2	62	1.19
16787--16869	25	3.3	25	78	8	87	36	0	3	60	1.14
16920--17039	29	4.3	28	80	11	106	51	0	8	40	1.32
16937--17039	29	3.7	26	81	14	109	51	0	7	40	1.31
17059--17104	23	2.0	23	91	0	74	52	0	13	34	1.40
17437--17488	7	6.9	7	78	10	50	65	0	9	25	1.23
17437--17488	15	3.4	15	81	10	61	65	0	9	25	1.23
18239--18434	72	3.0	63	74	14	169	55	7	4	32	1.47
18251--18393	72	2.0	71	83	6	182	57	7	2	32	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18273--18423	72	2.1	71	81	6	171	58	6	1	33	1.35
21884--22004	64	1.9	64	82	1	154	27	19	25	28	1.98
22324--22820	217	2.2	224	89	4	778	50	8	11	28	1.68
22972--23032	27	2.2	28	88	2	88	47	8	4	39	1.55
23074--23111	11	3.5	11	88	0	58	50	2	2	44	1.30
23019--23121	20	5.1	20	69	12	75	45	6	5	41	1.55
23161--23221	22	2.9	20	87	7	77	45	0	4	49	1.23
23264--23336	20	3.4	20	77	17	74	39	6	2	50	1.43
23288--23379	33	2.9	32	84	6	116	42	6	4	46	1.49
23398--23527	18	6.9	18	73	20	90	42	10	7	40	1.67
23391--23474	42	2.0	42	92	0	141	39	9	10	40	1.73
23398--23529	20	6.9	20	71	22	106	42	9	7	40	1.66
23445--23509	33	2.0	32	85	5	87	46	10	6	36	1.64
23526--23685	18	9.2	18	75	16	133	43	7	3	45	1.50
23524--23685	20	8.4	19	80	10	127	43	7	3	45	1.49
23536--23595	29	2.1	27	77	19	61	45	5	5	45	1.47
23536--23690	27	5.8	28	80	9	123	43	6	3	46	1.47
23471--23707	36	6.6	36	74	14	113	43	8	4	43	1.53
23715--23747	13	2.4	14	85	10	50	48	30	0	21	1.50
23769--23977	9	22.4	9	64	21	51	45	6	5	43	1.51
23766--23961	18	11.1	18	75	14	185	45	6	6	41	1.55
23742--23964	69	3.2	68	80	14	265	44	6	5	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23742--23964	36	6.4	37	80	12	233	44	6	5	42	1.54
24021--24158	62	2.2	61	82	5	170	49	4	9	36	1.55
24955--24988	9	3.9	9	84	7	52	35	0	2	61	1.11
24954--24992	17	2.4	17	95	4	71	33	0	5	61	1.18
27227--27270	13	3.4	13	80	0	52	15	2	13	68	1.31
27309--27379	34	2.1	33	84	10	90	19	4	11	64	1.42
33004--33057	26	2.1	26	100	0	108	29	18	3	48	1.65
34185--34282	51	1.9	52	95	2	180	48	7	3	40	1.46
34252--34292	17	2.4	17	95	0	73	46	7	0	46	1.30
39813--39848	16	2.2	17	90	5	56	50	2	0	47	1.15
41649--41896	40	6.2	40	68	10	123	26	21	14	36	1.93
41649--41896	80	3.1	79	88	2	354	26	21	14	36	1.93
41899--42038	19	7.2	19	78	7	104	36	22	10	30	1.88
41913--42038	39	3.3	37	77	5	126	36	23	9	30	1.87
42010--42056	20	2.4	20	89	3	69	42	25	6	25	1.78
43118--43157	21	2.0	19	85	9	53	22	10	32	35	1.87
47408--47458	27	2.0	25	84	7	66	49	11	5	33	1.64
48998--49135	36	3.9	36	84	0	170	34	19	23	21	1.96
56964--57027	33	2.0	32	81	6	76	29	17	10	42	1.83
56997--57117	39	3.1	39	95	0	215	24	16	18	40	1.90
62310--62372	25	2.7	23	80	9	65	41	3	1	53	1.26
62356--62394	18	2.2	17	86	9	51	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62342--62394	20	2.6	19	77	19	54	37	0	0	62	0.96
62370--62460	31	3.0	29	79	16	71	43	1	3	51	1.25
62529--62600	21	3.2	22	78	11	67	52	0	0	47	1.00
62534--62602	27	2.5	28	83	9	79	52	0	0	47	1.00
62719--62781	23	2.6	24	78	19	60	47	0	1	50	1.10
69629--69662	15	2.3	15	89	0	50	32	17	8	41	1.80
69644--69851	105	2.0	105	82	3	258	33	18	12	35	1.89
69811--70301	249	2.0	251	88	3	749	26	14	8	50	1.71

Tables:   1

The End!