genome.fa.s1680.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001680.1 Hibiscus syriacus cultivar Beakdansim tig00003358_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103449

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5978--6067	31	3.0	31	76	14	98	21	15	4	58	1.54
8117--8169	26	2.0	26	92	0	88	32	24	24	18	1.97
11037--11177	47	3.0	47	95	0	246	34	15	12	36	1.86
11176--11214	19	2.1	19	85	9	53	56	0	5	38	1.22
19203--19245	23	2.0	23	90	9	72	30	4	0	65	1.13
21606--21646	20	2.0	21	85	4	57	26	0	4	68	1.10
27264--27323	28	2.1	28	90	0	93	21	40	6	31	1.79
33318--33362	23	1.9	24	90	4	74	57	2	2	37	1.23
33302--33357	28	2.0	27	83	10	69	58	1	3	35	1.26
33317--33369	23	2.2	24	83	6	72	58	1	1	37	1.20
33347--33398	19	2.8	18	76	18	54	53	3	0	42	1.19
33350--33448	42	2.5	40	80	8	119	51	3	0	45	1.16
33356--33426	23	3.3	22	67	16	58	46	2	0	50	1.16
33441--33470	15	2.0	15	93	0	51	63	0	0	36	0.95
33937--34021	31	2.7	31	79	13	102	29	10	9	50	1.68
37753--37796	22	2.0	23	86	4	63	45	0	0	54	0.99
37745--37914	31	5.7	30	69	17	104	47	0	1	50	1.13
37760--37872	54	2.1	51	80	13	122	50	0	0	47	1.13
37849--37912	28	2.2	29	83	8	78	51	0	1	46	1.10
37764--37913	29	5.1	28	67	23	94	50	0	1	48	1.14
37870--37922	20	2.7	19	73	18	54	47	0	1	50	1.12
37885--37922	11	3.5	11	82	10	51	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37917--37961	23	2.0	23	86	0	63	53	2	2	42	1.25
38005--38062	29	2.0	29	86	6	82	48	1	0	50	1.11
38315--38384	21	3.6	21	72	21	80	30	22	7	40	1.81
38307--38403	36	2.7	36	95	0	167	34	19	5	41	1.74
38291--38336	15	3.1	15	78	6	58	30	17	8	43	1.79
39652--39691	18	2.2	19	90	4	64	62	0	7	30	1.23
39742--39786	2	22.5	2	86	0	63	53	4	0	42	1.21
39736--39784	16	3.1	16	96	0	89	55	6	0	38	1.25
39865--39899	16	2.2	16	89	0	52	65	5	11	17	1.43
41214--41275	12	5.3	12	72	18	51	67	1	1	29	1.09
41226--41267	21	2.0	22	90	4	68	69	2	0	28	1.01
41441--41588	43	3.5	43	70	9	142	29	14	27	28	1.95
41425--41629	40	5.0	40	69	9	144	29	15	27	26	1.96
41425--41628	83	2.5	83	95	0	372	29	15	27	26	1.96
41555--41904	133	2.6	134	88	1	479	23	18	31	26	1.97
42393--42417	12	2.1	12	100	0	50	8	0	8	84	0.79
43074--43194	37	3.5	36	69	23	114	43	10	12	33	1.77
43111--43241	30	4.1	30	71	21	106	42	12	10	33	1.78
43056--43224	67	2.5	67	97	0	311	45	11	12	30	1.77
43188--43249	30	2.1	30	87	3	90	48	14	9	27	1.75
43229--43327	51	1.9	52	91	2	164	37	17	14	31	1.89
43326--43450	29	4.5	28	86	5	155	46	14	10	28	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43341--43440	29	3.5	28	90	4	157	44	15	10	31	1.79
43689--43786	36	2.8	35	80	6	110	32	13	19	34	1.90
43690--43808	36	3.4	36	77	6	102	35	13	21	30	1.91
43760--43992	105	2.3	101	83	9	276	36	12	19	31	1.89
44469--44547	4	21.8	4	73	19	75	29	0	24	46	1.53
44457--44560	28	3.7	28	98	0	199	26	0	25	47	1.53
48368--48427	32	2.0	32	90	9	99	61	10	15	13	1.56
50103--50142	18	2.2	19	90	4	64	62	0	7	30	1.23
50187--50234	14	3.5	14	91	2	80	58	6	0	35	1.23
50308--50342	16	2.2	16	89	0	52	65	5	11	17	1.43
51666--51712	21	2.2	22	88	3	69	70	2	0	27	0.99
52875--52913	3	13.7	3	89	10	64	30	0	0	69	0.89
62945--64185	54	23.3	51	81	9	936	32	19	26	21	1.97
62942--64174	159	7.7	159	83	7	1231	32	19	26	21	1.97
63800--63936	68	2.0	68	90	2	213	32	25	20	21	1.98
63746--63991	122	2.0	122	89	3	379	33	23	23	19	1.97
63692--64009	176	1.8	176	90	2	523	34	23	23	18	1.96
64169--64622	55	8.3	55	91	2	558	29	13	27	30	1.94
64190--64590	218	1.8	218	84	1	552	29	13	27	29	1.95
67261--67285	12	2.1	12	100	0	50	56	0	0	44	0.99
68478--68525	20	2.2	21	82	10	53	47	0	2	50	1.12
68551--68633	27	3.0	27	77	16	82	49	1	0	49	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68569--68643	27	2.8	27	69	16	66	48	0	0	52	1.00
68552--68656	54	1.9	53	81	7	122	51	1	0	46	1.12
68699--68746	21	2.4	21	82	6	64	54	0	2	43	1.12
70992--71033	21	2.0	21	95	0	75	61	11	4	21	1.48
76102--76160	29	2.0	29	96	0	109	25	11	13	49	1.76
76111--76168	29	2.0	29	86	3	82	31	10	15	43	1.80
80767--80825	29	2.0	29	100	0	118	23	13	13	49	1.78
89282--89336	22	2.6	21	91	5	92	23	23	29	23	1.99
92918--92942	12	2.1	12	100	0	50	36	0	8	56	1.29
93113--93138	2	13.0	2	100	0	52	50	0	0	50	1.00
98489--98591	30	3.4	31	82	7	115	63	26	8	1	1.34
100330--100399	34	2.1	34	97	0	131	47	14	11	27	1.78

Tables:   1

The End!