Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001682.1 Hibiscus syriacus cultivar Beakdansim tig00003360_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56126

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3918--3961
17
2.5
18
85
3
63
38
13
20
27
1.90
7875--7908
16
2.1
16
88
0
50
23
11
17
47
1.81
9280--9344
30
2.2
30
91
0
103
15
24
35
24
1.94
19913--19972
26
2.3
27
76
2
68
75
1
8
15
1.12
19943--20062
53
2.3
52
80
15
124
65
2
3
28
1.21
19938--20078
41
3.3
43
78
10
123
63
2
2
31
1.21
19985--20070
38
2.3
38
84
8
104
63
2
2
31
1.19
20646--20753
37
2.9
37
95
0
189
32
11
14
41
1.81
21304--22598
165
7.8
164
80
5
1180
25
19
23
30
1.98
21316--22621
249
5.2
249
80
4
1183
25
19
23
30
1.98
21252--22621
414
3.3
411
81
5
1503
25
19
23
31
1.98
26595--26734
21
6.8
20
68
17
81
74
2
2
20
1.05
26601--26736
9
14.6
9
71
20
59
74
2
2
20
1.06
26601--26695
20
4.8
19
73
15
68
76
2
4
16
1.03
26596--26801
44
4.7
42
77
14
136
69
1
2
25
1.11
26669--26737
8
8.1
8
78
15
52
73
1
0
24
0.91
26622--26801
44
4.1
43
78
16
165
68
1
2
27
1.13
26653--26802
45
3.2
47
83
7
191
66
2
0
31
1.08
26675--26746
35
2.1
35
87
10
103
69
1
0
29
0.97
26936--26974
14
2.7
15
88
4
53
66
0
2
30
1.05
27367--27474
37
2.9
37
87
0
153
35
11
12
41
1.78
28766--28790
2
12.5
2
100
0
50
48
0
0
52
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30548--30576
12
2.3
13
94
5
51
68
0
0
31
0.89
30650--30681
16
2.0
16
93
0
55
81
3
0
15
0.82
30647--30683
19
1.9
19
88
0
56
78
2
0
18
0.87
32044--32092
19
2.4
20
83
13
64
65
0
0
34
0.93
32542--33733
106
11.5
106
91
3
1862
21
18
26
33
1.96
32976--33137
51
3.3
51
66
13
142
20
17
27
33
1.95
32586--33733
399
2.8
406
90
4
1698
21
18
26
33
1.96
37249--37277
12
2.3
13
94
5
51
68
0
0
31
0.89
37351--37382
16
2.0
16
93
0
55
81
3
0
15
0.82
37348--37384
19
1.9
19
88
0
56
78
2
0
18
0.87
38746--38794
19
2.4
20
83
13
64
65
0
0
34
0.93
39761--41286
510
3.0
509
95
0
2730
28
27
16
27
1.97
48774--48808
16
2.1
17
89
5
54
17
5
17
60
1.55
50124--50169
22
2.1
22
95
0
83
30
0
32
36
1.58
51655--51708
20
2.8
20
94
2
92
53
16
5
24
1.64

Tables:   1

The End!