genome.fa.s1683.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001683.1 Hibiscus syriacus cultivar Beakdansim tig00003361_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49930

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
495--548	26	2.0	26	85	3	72	24	24	20	31	1.98
792--832	6	6.8	6	88	0	64	17	0	48	34	1.47
792--850	12	4.9	12	83	6	66	22	1	44	32	1.63
2356--2395	16	2.5	16	95	0	71	7	37	20	35	1.81
4180--4242	23	2.7	23	82	4	74	31	22	23	22	1.98
6117--6186	24	2.7	25	80	10	70	48	0	2	48	1.16
13287--13348	21	2.9	21	82	4	79	17	27	32	22	1.97
16859--16911	18	2.7	20	80	14	65	26	13	7	52	1.66
16869--16908	18	2.2	18	95	0	71	25	12	7	55	1.63
20091--20122	2	16.0	2	100	0	64	50	0	0	50	1.00
22881--22988	52	2.1	52	96	3	200	38	19	9	32	1.83
22906--22987	26	3.2	26	63	13	69	37	19	7	35	1.80
24549--24647	36	2.8	36	96	0	180	41	15	17	26	1.88
26033--26065	2	16.5	2	100	0	66	51	0	0	48	1.00
26471--26570	34	2.8	37	81	9	125	32	13	14	41	1.83
29640--29811	57	3.0	57	88	0	236	38	30	16	13	1.88
29869--29976	24	4.5	24	81	2	65	37	18	14	28	1.91
29886--29976	24	3.8	24	82	2	103	35	18	16	29	1.93
34264--34435	57	3.0	57	92	0	281	34	31	19	13	1.91
34493--34600	24	4.5	24	77	2	65	37	17	15	28	1.91
34507--34600	24	4.0	24	78	2	100	35	18	18	28	1.94
40670--40717	21	2.3	21	85	7	62	12	25	10	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42481--42595	51	2.3	51	89	0	167	50	10	1	37	1.47
43685--43743	24	2.5	23	76	13	57	30	11	3	54	1.53

Tables:   1

The End!