genome.fa.s1684.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001684.1 Hibiscus syriacus cultivar Beakdansim tig00003362_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91295

Tables:   1   

This is table  1  of  1  ( 79 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1949--2145	43	4.6	43	89	6	278	32	23	24	18	1.97
1949--2153	85	2.4	85	85	8	283	33	23	24	18	1.97
5922--6022	31	3.2	31	72	9	89	38	18	11	30	1.87
6826--6868	21	2.0	21	90	0	68	23	25	27	23	2.00
6899--6943	12	4.0	12	75	13	51	20	13	22	44	1.85
8727--8899	60	2.9	59	82	6	181	32	19	4	43	1.70
9960--9985	2	13.0	2	100	0	52	50	0	0	50	1.00
10648--10702	28	2.0	28	100	0	110	40	18	12	29	1.87
13380--13435	23	2.5	22	82	5	69	5	5	28	60	1.41
14102--14131	12	2.5	12	94	0	51	10	30	26	33	1.89
14169--14194	5	5.2	5	100	0	52	80	0	0	19	0.71
14134--14194	19	3.2	19	71	2	50	73	0	3	22	0.97
14185--14224	19	2.2	18	86	4	53	60	2	2	35	1.24
14206--14484	37	7.8	37	70	19	150	46	8	4	40	1.53
14314--14439	39	3.3	37	82	11	139	46	6	3	43	1.47
14454--14498	22	2.0	23	91	4	74	48	6	0	44	1.29
14416--14540	60	2.1	60	85	7	164	44	6	4	44	1.48
15156--15983	165	5.1	165	89	3	1117	23	21	25	28	1.99
15131--15984	249	3.5	248	83	5	1054	23	22	25	28	1.99
19041--19086	19	2.4	19	100	0	92	67	10	10	10	1.43
22406--22684	37	7.8	37	69	19	141	47	8	3	40	1.52
22514--22639	39	3.3	37	80	11	121	46	6	3	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22654--22698	22	2.0	23	91	4	74	48	6	0	44	1.29
22616--22740	60	2.1	59	85	10	164	44	7	4	44	1.50
23472--23535	19	3.2	20	72	14	53	43	1	1	53	1.19
23481--23530	20	2.5	20	78	12	59	40	2	2	56	1.22
23448--23534	31	2.8	30	79	10	95	41	1	3	54	1.25
24257--24324	31	2.2	31	86	7	93	54	2	1	41	1.24
24252--24319	19	3.5	20	73	15	54	54	1	2	41	1.24
24257--24342	31	2.7	31	82	10	77	53	3	1	41	1.25
29262--29372	53	2.1	51	95	3	195	34	13	10	41	1.79
32651--32691	15	2.9	15	79	13	52	60	0	0	39	0.96
34108--34148	11	3.8	10	87	9	55	41	0	2	56	1.13
34144--34226	3	27.7	3	92	0	130	61	0	2	36	1.09
34544--35410	113	7.6	113	92	0	1158	28	18	13	38	1.89
35847--35920	22	3.4	22	88	0	103	36	14	12	36	1.84
38501--38724	114	2.0	114	91	0	367	30	20	16	33	1.94
40959--40991	17	2.0	16	94	5	57	0	15	0	84	0.61
44188--44225	14	2.7	14	80	11	51	55	0	13	31	1.38
46569--46609	15	2.9	15	79	13	52	60	0	0	39	0.96
48024--48064	11	3.8	10	87	9	55	41	0	2	56	1.13
48060--48145	3	28.7	3	92	0	145	62	0	2	34	1.08
53257--53800	257	2.1	249	86	8	736	28	10	19	41	1.85
54171--54217	18	2.7	18	90	3	69	27	27	8	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59131--59165	17	2.1	17	89	5	54	51	11	5	31	1.61
69875--69928	26	2.1	26	100	0	108	22	40	11	25	1.87
73258--73287	14	2.1	14	93	0	51	40	0	10	50	1.36
74919--74952	17	2.0	17	88	0	50	35	0	2	61	1.11
74977--75033	30	1.9	30	92	0	96	40	7	8	43	1.63
77833--77884	20	2.6	20	96	0	95	38	26	13	21	1.90
77940--78133	20	9.6	20	76	8	76	35	25	19	19	1.95
77936--78133	40	5.0	39	81	4	200	35	26	19	19	1.95
77940--78132	60	3.2	60	83	0	251	35	25	19	19	1.95
78513--78583	33	2.2	33	92	0	115	11	22	18	47	1.80
78704--78758	14	3.6	14	73	21	56	41	23	25	9	1.83
78704--78774	33	2.2	33	94	0	124	43	25	22	8	1.81
78770--78867	19	5.7	19	70	22	81	10	24	22	42	1.84
78792--78881	14	5.7	14	73	23	72	8	24	24	42	1.83
78775--78889	33	3.5	33	93	0	203	9	23	21	45	1.81
80575--80949	91	4.1	93	97	2	699	22	12	18	45	1.84
80575--80951	183	2.1	183	95	3	697	22	12	18	45	1.84
80993--81121	19	7.3	19	75	17	125	45	28	17	8	1.77
81029--81121	33	2.8	32	91	4	150	46	27	18	7	1.76
80993--81121	52	2.5	52	74	14	140	45	28	17	8	1.77
81139--81194	14	3.7	14	80	17	67	10	21	23	44	1.83
81122--81213	32	2.8	33	91	3	159	10	20	21	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83163--83193	14	2.3	14	94	5	55	35	0	22	41	1.54
83299--83400	19	5.6	19	84	13	151	44	17	23	14	1.86
83299--83396	33	2.7	36	89	9	139	45	17	22	14	1.84
83429--83680	19	14.4	19	79	17	289	14	20	18	46	1.84
83407--83614	52	3.9	52	87	8	232	15	20	17	46	1.84
83429--83680	71	3.6	70	81	15	310	14	20	18	46	1.84
83429--83649	52	4.2	52	89	7	258	14	21	17	46	1.83
83510--83680	52	3.3	50	84	10	211	14	20	19	45	1.85
83391--83680	141	2.1	139	88	7	430	15	20	18	45	1.85
86150--86196	24	2.0	24	87	8	69	38	21	14	25	1.92
86878--87285	20	20.5	20	85	5	486	20	18	25	35	1.95
87341--87392	20	2.6	20	96	0	95	21	13	26	38	1.90
90290--90328	16	2.5	16	80	19	55	46	5	7	41	1.55

Tables:   1

The End!