genome.fa.s1685.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001685.1 Hibiscus syriacus cultivar Beakdansim tig00003364_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81625

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2824--3324	82	6.1	83	85	4	615	23	19	24	32	1.97
3609--3827	120	1.8	120	87	0	330	24	19	25	31	1.98
3992--4144	43	3.6	43	87	0	207	22	18	28	30	1.97
4342--4470	64	2.0	64	89	3	197	31	10	20	37	1.87
4352--4498	64	2.3	63	85	8	183	29	13	21	35	1.92
4728--4816	32	2.8	32	80	0	88	32	26	11	29	1.91
6623--6679	30	1.9	30	100	0	114	49	21	14	15	1.80
6628--6690	30	2.1	30	88	2	92	50	22	12	14	1.76
7783--7812	16	1.9	15	93	6	51	76	0	10	13	1.01
17940--17988	19	2.6	19	96	0	89	28	38	20	12	1.89
18559--18723	60	2.8	60	83	3	199	32	23	4	38	1.76
18636--18719	29	2.8	30	68	12	73	35	23	3	36	1.73
18774--18922	60	2.5	60	83	11	166	36	5	25	32	1.79
20543--20706	59	2.8	58	84	6	204	32	25	4	37	1.77
24692--25033	116	2.9	116	80	3	359	34	20	8	37	1.82
25614--25701	31	3.0	30	80	6	108	43	7	10	38	1.68
31121--31185	31	2.1	31	85	0	85	20	12	15	52	1.74
34349--34520	27	6.4	27	74	11	113	45	4	7	42	1.51
34376--34492	40	2.9	40	93	0	198	47	3	7	41	1.49
34456--34520	25	2.5	26	87	7	87	43	3	9	44	1.51
34484--34775	36	7.9	36	74	15	176	47	2	5	44	1.39
34562--34619	2	29.0	2	100	0	116	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34484--34727	38	6.6	38	74	13	168	46	2	4	45	1.39
34604--34783	38	4.9	37	75	14	149	46	2	6	45	1.40
34632--34785	38	4.1	38	78	9	156	44	1	7	46	1.42
34789--34835	25	2.0	23	87	8	67	34	0	0	65	0.93
34872--34904	13	2.5	13	95	0	57	36	18	30	15	1.91
36042--36138	5	18.4	5	69	20	56	21	6	0	72	1.07
36092--36186	3	33.7	3	71	21	55	24	3	2	70	1.13
36039--36132	17	5.1	18	69	15	68	20	6	0	73	1.05
36039--36185	58	2.4	60	80	13	149	22	6	1	70	1.17
36042--36186	12	13.0	11	71	15	77	23	6	1	68	1.19
41463--41491	15	1.9	15	100	0	58	44	20	0	34	1.52
42708--42736	12	2.3	13	94	5	51	37	6	3	51	1.46
42844--42899	12	4.4	12	77	18	51	12	12	1	73	1.18
42852--42884	15	2.2	15	94	0	57	6	15	0	78	0.93
44045--44145	53	1.9	53	83	0	130	23	15	13	46	1.82
45014--45052	20	2.0	19	90	5	60	51	0	0	48	1.00
46027--46070	21	2.0	23	83	12	58	79	0	2	18	0.83
46147--46227	38	2.0	40	82	15	98	64	2	3	29	1.24
47691--47733	15	2.6	18	78	21	65	74	0	4	20	1.00
47760--47803	23	2.0	22	82	13	54	68	0	11	20	1.20
49591--50221	84	7.7	81	80	6	651	24	21	24	29	1.99
49522--50231	165	4.3	164	89	0	1042	24	21	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54994--55036	13	3.3	13	81	12	52	76	0	4	18	0.95
55127--55174	21	2.3	20	86	13	62	70	0	4	25	1.04
56222--56273	2	28.0	2	75	21	51	51	1	0	46	1.12
56182--56233	23	2.2	24	83	10	63	46	1	11	40	1.51
56287--56324	18	2.2	17	90	9	60	36	10	7	44	1.68
56309--56372	32	2.0	32	87	0	92	45	7	4	42	1.54
56552--56589	2	19.5	2	94	5	69	50	0	0	50	1.00
56632--56662	4	7.8	4	100	0	62	25	22	0	51	1.48
57666--57703	20	1.9	20	94	0	67	31	34	15	18	1.92
58719--58877	2	82.5	2	76	16	140	49	1	3	44	1.31
58866--58937	30	2.5	29	86	8	94	41	5	6	45	1.54
58926--58987	32	2.0	31	90	3	97	48	8	3	40	1.49
59170--59208	2	19.5	2	100	0	78	51	0	0	48	1.00
59309--59339	14	2.2	14	94	0	53	45	3	9	41	1.53
59320--59362	10	4.1	10	77	11	50	46	2	9	41	1.48
59309--59359	12	4.2	12	80	9	52	47	3	7	41	1.51
59602--59674	19	3.8	19	83	7	69	35	5	16	42	1.71
60819--61001	58	3.2	58	99	0	357	45	9	7	37	1.65
60819--61038	58	3.8	57	91	4	212	48	10	7	34	1.64
60819--61038	116	1.9	115	87	7	320	48	10	7	34	1.64
61073--61113	2	20.5	2	100	0	82	51	0	0	48	1.00
64482--64526	17	2.7	16	83	10	54	77	2	17	2	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66560--66611	20	2.6	20	81	6	70	36	17	9	36	1.82
74865--74988	23	5.8	22	70	18	75	63	14	8	13	1.50
76728--76786	29	2.0	30	83	9	77	52	5	22	20	1.65

Tables:   1

The End!