genome.fa.s1686.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001686.1 Hibiscus syriacus cultivar Beakdansim tig00003365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80468

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4420--4472	27	1.9	28	85	11	74	41	1	0	56	1.10
6122--6173	20	2.6	21	81	9	72	26	32	15	25	1.95
6162--6283	20	6.1	20	72	14	90	34	21	20	23	1.97
6404--6457	22	2.5	22	87	0	81	24	40	14	20	1.90
6719--6761	20	2.2	20	87	4	61	46	25	16	11	1.80
6758--6799	20	2.1	20	86	0	57	14	19	21	45	1.85
9973--10024	24	2.2	24	82	0	59	36	19	17	26	1.94
10903--10953	19	2.7	19	100	0	102	29	9	23	37	1.87
10942--10992	20	2.5	20	93	0	84	19	17	21	41	1.91
11016--11069	20	2.7	21	82	8	76	27	12	29	29	1.94
12131--12172	13	3.2	13	83	16	59	30	4	19	45	1.71
12266--12312	12	3.7	13	80	13	62	44	0	0	55	0.99
12260--12312	24	2.1	24	83	16	63	41	1	0	56	1.10
17079--17107	15	1.9	15	100	0	58	34	13	6	44	1.71
18623--18694	18	4.0	18	90	0	108	29	30	19	20	1.97
22528--22557	16	1.9	16	93	6	53	66	6	0	26	1.16
24819--24882	3	21.0	3	80	3	74	42	0	0	57	0.98
24819--24882	15	4.4	15	79	20	82	42	0	0	57	0.98
26161--26218	3	20.3	3	79	13	61	27	1	0	70	0.97
26161--26218	14	4.1	14	84	10	82	27	1	0	70	0.97
26295--26493	105	1.9	104	82	9	253	36	9	9	44	1.69
26477--26531	27	2.0	29	82	7	69	47	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29138--29175	16	2.5	15	87	8	51	13	13	10	63	1.53
29149--29176	8	3.5	8	100	0	56	14	10	10	64	1.50
33299--33636	114	3.0	114	93	0	577	32	16	21	29	1.95
35683--35840	54	3.0	54	78	6	182	39	14	20	25	1.91
36202--36261	22	2.7	22	89	0	93	35	15	13	36	1.86
36776--37101	165	2.0	167	88	3	496	35	13	12	38	1.83
37104--37321	76	2.9	76	97	0	409	23	19	21	35	1.96
37490--37550	3	20.0	3	79	3	68	42	0	0	57	0.98
37490--37540	15	3.4	15	88	0	75	41	0	0	58	0.98
38829--38886	3	20.3	3	79	13	61	27	1	0	70	0.97
38829--38886	14	4.1	14	84	10	82	27	1	0	70	0.97
39146--39200	27	2.0	29	82	7	69	47	1	0	50	1.11
40996--41050	15	3.7	15	82	0	74	41	5	5	47	1.49
40996--41054	30	2.0	30	96	0	109	40	5	10	44	1.60
42737--42792	14	4.0	14	90	0	76	25	7	28	39	1.82
46205--46452	81	3.1	80	88	1	361	25	22	12	39	1.89
46593--48927	54	43.2	54	88	1	3242	29	19	17	33	1.95
52572--52602	2	15.5	2	100	0	62	48	0	0	51	1.00
52775--53021	81	3.1	81	88	0	370	25	22	12	38	1.90
53162--53652	54	9.1	53	88	4	680	29	20	18	32	1.96
54924--54964	16	2.7	16	79	20	52	58	0	2	39	1.11
55448--55489	19	2.2	19	83	8	50	66	4	0	28	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56742--56795	21	2.6	21	100	0	108	20	16	33	29	1.95
56874--56979	20	5.2	20	83	6	115	31	25	19	23	1.98
57532--57572	19	2.2	19	90	0	64	51	24	14	9	1.72
57577--57717	19	7.8	19	70	17	104	12	24	19	43	1.86
57605--57692	33	2.6	33	94	1	149	12	27	21	38	1.89
57657--57717	20	3.1	19	76	17	61	14	24	16	44	1.85
59465--59491	13	2.1	13	100	0	54	0	7	14	77	0.97
59790--59959	42	4.1	41	79	7	175	23	35	19	21	1.96
59893--59959	21	3.2	21	66	6	55	23	35	20	19	1.95
61317--61352	14	2.6	14	95	0	63	30	0	25	44	1.54
61477--61533	14	3.7	14	75	20	60	43	22	24	8	1.81
61467--61548	33	2.5	33	95	0	146	43	20	23	12	1.85
61467--61519	19	3.1	19	71	23	62	45	20	24	9	1.81
61541--61640	33	3.0	33	89	4	157	18	21	20	41	1.91
61544--61660	19	6.7	19	69	18	83	16	20	21	41	1.90
63928--63952	12	2.1	12	100	0	50	0	28	0	72	0.86
64127--64180	24	2.2	24	93	0	90	42	20	14	22	1.88
64127--64194	24	2.8	24	86	0	64	39	20	14	25	1.91
64956--65007	21	2.5	21	87	3	70	38	17	23	21	1.93
64973--65084	20	5.5	20	74	5	73	38	19	18	23	1.93
65297--65384	20	4.4	20	78	5	106	39	23	20	15	1.91
65411--65478	19	3.8	19	83	12	92	14	20	17	47	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65613--65649	14	2.6	14	86	0	56	48	21	0	29	1.50
67512--67565	20	2.7	20	79	0	72	38	20	24	16	1.92
67568--67658	14	5.9	14	72	20	74	48	21	17	12	1.80
67552--67663	33	3.4	33	95	1	199	47	21	18	12	1.81
67669--67746	19	4.4	18	79	15	83	12	19	20	47	1.82
67715--67778	19	3.3	19	82	2	74	17	21	18	42	1.89
67705--67789	19	4.4	19	80	5	73	15	21	22	41	1.90
68271--68315	18	2.5	18	88	0	72	13	15	44	26	1.83
69628--69686	20	3.0	20	87	0	73	42	22	18	16	1.89
69938--69986	22	2.3	22	86	6	66	20	14	44	20	1.86
69947--69988	22	1.9	22	95	0	75	16	16	45	21	1.86
70153--70304	20	7.4	20	82	5	126	25	16	24	34	1.95
70153--70304	62	2.5	61	78	3	155	25	16	24	34	1.95
70153--70311	82	1.9	83	82	6	198	24	15	23	35	1.94
70816--70845	2	15.0	2	92	0	51	0	46	3	50	1.18
77248--77281	17	1.9	18	94	5	61	11	11	11	64	1.50

Tables:   1

The End!