genome.fa.s1687.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001687.1 Hibiscus syriacus cultivar Beakdansim tig00003369_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87376

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4225--4289	34	2.0	31	88	8	94	32	0	3	64	1.09
6041--6146	42	2.5	42	84	0	140	26	33	15	24	1.95
6128--6194	21	3.2	21	80	0	71	23	32	23	19	1.97
7202--7825	139	4.5	138	83	2	757	34	24	17	23	1.96
13119--13171	20	2.7	20	80	8	63	32	15	33	18	1.92
13196--13249	19	2.7	20	82	8	65	31	18	20	29	1.96
13196--13266	22	3.5	22	83	9	80	29	16	23	29	1.97
13589--13887	54	5.5	54	89	1	411	28	17	20	34	1.95
15375--15400	13	2.0	13	100	0	52	69	7	7	15	1.35
19938--19989	19	2.7	19	84	3	68	32	15	32	19	1.93
20014--20073	22	2.9	22	80	7	63	30	15	23	31	1.95
20409--20856	54	8.3	54	86	1	542	27	16	21	34	1.95
23485--23535	22	2.3	22	79	0	57	27	7	1	62	1.33
24890--24954	20	3.2	20	75	0	67	35	13	21	29	1.92
30135--30182	24	2.0	24	100	0	96	33	8	20	37	1.83
30729--30808	40	2.0	40	85	5	106	35	16	20	28	1.94
30740--31060	41	7.9	41	86	2	380	27	19	19	32	1.97
34636--34970	85	3.9	84	83	3	384	24	22	20	31	1.98
34636--34989	43	8.3	42	84	3	379	23	22	21	32	1.98
38599--38643	23	2.0	22	86	4	63	53	4	11	31	1.56
39701--39814	51	2.3	50	85	1	147	18	35	28	16	1.93
39737--39855	50	2.4	49	83	9	143	18	31	31	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39945--39986	10	4.2	10	85	11	59	30	28	0	40	1.57
42917--43032	51	2.4	46	81	9	135	28	21	22	27	1.99
43046--43171	51	2.5	50	82	1	135	19	28	32	19	1.96
46156--46200	23	2.0	23	90	0	72	35	4	24	35	1.76
47413--47486	32	2.3	33	92	4	132	20	5	28	45	1.73
47413--47496	32	2.6	32	90	5	116	19	7	30	42	1.78
48334--48377	16	2.7	15	83	13	52	11	2	47	38	1.52
48949--49025	34	2.3	34	81	16	90	33	0	3	62	1.14
48981--49058	34	2.4	31	82	8	84	39	0	1	58	1.06
48981--49055	31	2.4	32	80	8	82	40	0	1	58	1.06
50779--50826	21	2.3	21	85	0	60	25	39	12	22	1.89
50830--50923	21	4.5	21	90	5	129	19	35	25	20	1.96
51446--51542	33	2.9	34	85	3	133	55	4	3	37	1.35
51444--51549	34	3.2	33	82	8	133	54	4	2	37	1.36
51930--52921	127	7.8	128	97	1	1863	33	19	24	22	1.97
52989--53029	8	5.2	8	82	5	57	36	29	0	34	1.58
56009--56054	22	2.1	22	88	8	67	43	0	2	54	1.12
59350--59409	28	2.1	27	82	11	68	50	0	5	45	1.23
62996--63036	21	1.9	20	85	14	55	46	2	2	48	1.28
77727--77891	20	8.2	20	84	2	143	35	19	20	24	1.96
77722--77891	40	4.3	39	78	9	164	35	18	21	24	1.95
83657--83746	45	2.0	45	80	8	103	28	21	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84683--84734	20	2.5	22	82	14	67	50	1	1	46	1.23
84903--84939	15	2.4	16	78	13	51	64	5	5	24	1.36
85973--86041	30	2.2	30	85	15	95	34	5	17	42	1.73
85982--86041	30	2.0	30	93	6	104	33	6	16	43	1.74
86131--86172	22	2.0	21	85	4	57	21	38	26	14	1.91
86151--86206	15	3.2	18	80	19	82	26	33	28	10	1.90
86152--86205	17	3.2	17	75	19	67	27	31	29	11	1.91
86240--86279	20	2.0	20	100	0	80	15	35	30	20	1.93
86319--86361	21	2.0	21	95	0	77	23	20	27	27	1.99
86633--86702	33	2.2	31	87	7	95	31	15	31	21	1.95

Tables:   1

The End!