genome.fa.s1688.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001688.1 Hibiscus syriacus cultivar Beakdansim tig00003372_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75190

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43--117	20	3.7	20	89	3	105	20	30	20	29	1.97
1430--1513	27	3.0	28	76	13	91	71	4	2	21	1.16
3518--3899	151	2.5	151	85	3	482	29	19	11	40	1.86
4728--4801	36	2.1	36	100	0	148	41	8	25	24	1.82
9477--9525	12	4.1	12	81	5	55	51	0	0	48	1.00
9459--9516	23	2.4	23	82	5	71	50	1	0	48	1.11
17173--17224	23	2.3	23	90	6	79	19	32	19	28	1.96
21320--21364	23	1.9	24	90	4	74	31	22	26	20	1.98
23059--23105	24	2.0	24	86	0	67	44	0	2	53	1.12
23254--23292	17	2.3	17	95	0	69	33	25	15	25	1.95
24713--24771	4	14.8	4	75	7	57	28	1	18	50	1.56
24716--24771	20	2.8	20	81	15	71	28	1	17	51	1.56
27501--27572	34	2.1	34	89	5	110	47	5	2	44	1.41
29350--29393	15	2.9	15	100	0	88	0	45	20	34	1.51
30197--30255	15	3.7	15	74	12	64	57	10	3	28	1.48
30256--30932	182	3.7	182	90	1	1004	42	14	15	28	1.86
33787--34873	201	5.4	201	89	2	1594	37	14	16	30	1.89
36305--37017	199	3.6	199	88	3	1015	40	12	15	31	1.84
37184--37236	21	2.5	21	81	6	72	20	26	18	33	1.96
37226--37319	21	4.5	21	87	1	127	40	17	21	21	1.91
37308--37422	20	5.7	20	87	2	149	31	27	19	21	1.97
37305--37442	41	3.4	40	84	2	177	34	26	18	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37609--37652	22	2.0	22	90	0	70	18	45	13	22	1.84
37901--37959	20	3.0	20	87	0	73	15	18	22	44	1.87
39278--39325	18	2.7	18	93	0	87	27	45	12	14	1.81
39866--39911	20	2.3	20	84	0	56	36	23	21	17	1.94
39877--39921	20	2.3	20	88	3	74	37	17	24	20	1.93
39885--39968	19	4.6	19	75	15	79	41	21	22	14	1.89
39975--40054	33	2.4	33	82	0	88	13	15	18	52	1.75
40048--40113	20	3.3	20	91	0	105	15	25	24	34	1.94
40084--40139	20	2.8	20	88	0	76	23	16	28	32	1.96
40487--40555	21	3.3	20	74	6	66	24	40	15	18	1.90
40477--40567	41	2.2	42	88	2	139	21	41	15	20	1.89
42830--43208	200	1.9	200	86	3	548	38	15	15	30	1.88
43228--43347	64	1.9	64	91	0	195	30	14	12	43	1.82
44660--44727	27	2.5	27	78	21	72	48	0	7	44	1.30
45154--45192	17	2.3	17	91	8	62	25	2	5	66	1.25
46025--46087	24	2.7	23	82	9	65	17	6	6	69	1.31
46021--46116	28	3.3	27	78	21	72	18	6	5	69	1.29
46071--46142	32	2.2	32	82	2	81	20	5	4	69	1.26
49271--49312	14	3.2	13	78	15	50	78	2	16	2	0.96
49391--49532	68	2.1	68	85	3	189	36	22	15	25	1.93
50463--50548	31	2.8	31	83	0	118	30	13	19	36	1.91
51113--51374	106	2.5	106	89	1	409	33	23	18	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51521--51707	102	1.8	102	81	4	234	27	18	12	41	1.87
51869--51949	37	2.2	37	86	2	108	49	14	7	28	1.70
51880--51968	37	2.4	37	92	3	144	44	16	8	29	1.78
53093--53142	2	25.5	2	87	4	75	46	0	2	52	1.12
55911--55973	23	2.6	24	78	19	60	50	1	0	47	1.10
55928--55991	22	2.9	23	81	6	71	48	1	0	50	1.10
56108--56176	19	3.6	19	75	14	70	52	1	0	46	1.09
56094--56169	22	3.6	21	74	22	61	52	1	0	46	1.08
56058--56156	27	3.6	27	75	14	87	50	1	1	47	1.14
56473--56507	14	2.5	14	100	0	70	48	5	5	40	1.51
57854--57916	31	2.0	32	85	14	87	31	0	4	63	1.15
59513--59586	32	2.3	33	83	4	96	13	12	36	37	1.82
59652--59704	27	2.0	27	96	0	97	15	3	30	50	1.61
59674--59752	38	2.1	38	92	2	133	10	8	39	41	1.70
62355--62395	20	2.0	20	95	0	73	31	0	17	51	1.46
64048--64130	19	4.4	19	85	0	103	45	2	15	36	1.60
67945--68018	34	2.1	34	95	2	130	48	13	9	28	1.73
69572--69621	26	1.9	26	100	0	100	42	20	10	28	1.84

Tables:   1

The End!