genome.fa.s1689.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001689.1 Hibiscus syriacus cultivar Beakdansim tig00003374_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71972

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5960--6004	22	2.0	22	82	0	54	26	6	4	62	1.39
7073--7098	3	8.7	3	100	0	52	30	0	0	69	0.89
15985--16043	21	2.8	21	68	0	55	37	16	20	25	1.93
15969--16211	126	1.9	126	81	1	290	29	20	24	25	1.99
15968--16208	42	5.7	42	84	2	225	29	20	24	25	1.99
18607--18663	9	6.7	9	76	11	57	31	1	1	64	1.13
18606--18655	17	3.0	17	91	2	75	34	2	4	60	1.27
18615--18660	16	2.9	16	87	6	58	30	2	2	65	1.16
26431--26531	50	2.0	50	90	3	159	49	4	14	30	1.65
28471--28636	76	2.2	76	87	2	235	30	2	10	57	1.45
29276--29316	21	1.9	22	90	5	66	19	4	0	75	0.98
29616--29661	24	1.9	24	91	8	76	43	23	4	28	1.73
34921--34960	21	1.9	21	94	0	71	70	12	5	12	1.33
37889--38020	70	1.9	69	84	9	180	43	3	6	46	1.46
38164--38279	21	5.6	21	69	10	60	32	27	18	21	1.96
38267--38495	20	11.4	20	81	5	230	37	25	17	20	1.94
39187--39233	24	2.0	24	87	8	69	25	14	21	38	1.92
39408--39432	12	2.1	12	100	0	50	72	0	28	0	0.86
41712--41995	33	8.2	33	78	13	268	47	17	21	13	1.81
41726--42019	19	16.7	19	77	17	314	46	17	21	13	1.83
41712--42019	52	5.9	52	85	9	371	46	17	21	13	1.83
41922--41976	14	3.6	14	73	21	56	47	20	21	10	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42032--42115	19	4.6	19	81	15	115	14	22	15	47	1.81
42009--42115	53	2.0	52	96	1	196	13	23	16	46	1.82
42206--42242	14	2.6	14	91	0	65	45	21	0	32	1.52
44169--44321	19	8.6	19	75	14	112	45	24	20	10	1.82
44243--44299	14	3.7	14	75	20	51	43	22	22	10	1.84
44187--44316	33	3.8	33	83	7	154	46	23	20	9	1.80
44333--44391	14	3.9	14	76	20	64	6	16	28	47	1.72
44317--44440	33	3.7	33	91	1	185	8	17	27	45	1.78
44317--44408	19	5.4	18	72	24	83	7	17	28	46	1.75
44366--44422	14	3.7	14	72	20	51	8	22	24	43	1.81
44539--44945	93	4.4	93	99	0	787	45	19	12	22	1.83
46628--46691	20	3.2	20	82	4	92	46	15	25	12	1.81
46626--46690	21	3.1	21	82	4	96	47	15	26	10	1.78
46716--46795	33	2.4	33	91	0	124	10	20	21	48	1.78
46732--46788	14	3.7	14	70	20	51	10	24	21	43	1.83
46776--46849	21	3.5	21	76	7	87	16	20	16	47	1.83
46929--46999	33	2.2	33	94	0	124	47	16	23	11	1.79
47378--47570	20	9.6	20	85	5	246	18	19	27	34	1.95
51133--51213	18	4.6	18	81	6	103	29	11	17	41	1.84
51128--51215	35	2.5	36	86	1	124	28	11	17	43	1.83
51310--51339	7	4.3	7	91	0	51	26	10	13	50	1.73
52206--52240	18	1.9	18	88	0	52	65	2	2	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55269--55320	19	2.8	19	73	2	52	51	1	5	40	1.37
55384--55442	30	2.0	30	89	0	91	44	10	1	44	1.48
55397--55442	15	3.0	16	78	12	60	45	13	2	39	1.55
55589--55622	2	17.0	2	100	0	68	50	0	0	50	1.00
70328--70357	3	10.0	3	92	0	51	0	30	0	70	0.88
71787--71840	26	2.0	27	96	3	101	31	27	11	29	1.91

Tables:   1

The End!