genome.fa.s169.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000169.1 Hibiscus syriacus cultivar Beakdansim tig00000298_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63675

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5478--5512	17	2.1	17	94	0	61	20	20	17	42	1.89
6806--6842	17	2.2	17	90	0	56	13	35	27	24	1.93
10060--10103	20	2.2	20	84	8	54	31	0	2	65	1.05
10117--10176	26	2.2	26	82	11	66	31	18	6	43	1.76
10370--10405	15	2.4	15	90	9	56	33	8	16	41	1.78
13325--13357	6	5.5	6	100	0	66	30	0	69	0	0.88
13505--13539	16	2.1	18	89	10	56	37	0	0	62	0.95
14553--14589	17	2.2	17	90	0	56	27	27	16	29	1.97
14872--14896	2	12.5	2	100	0	50	52	0	0	48	1.00
18735--18917	101	1.8	101	83	2	242	22	18	28	30	1.98
25260--25302	19	2.3	19	95	0	77	30	18	20	30	1.97
28466--28517	21	2.5	21	81	3	61	38	19	25	17	1.93
28503--28634	41	3.2	41	76	6	124	34	24	16	24	1.95
28506--28620	20	5.7	20	80	6	106	31	25	18	25	1.97
29114--29172	20	3.0	20	87	0	73	16	18	22	42	1.89
30492--30536	18	2.5	18	88	0	72	26	44	15	13	1.83
31021--31084	20	3.2	20	82	2	76	42	23	20	14	1.88
31073--31130	14	3.9	14	79	16	71	48	24	17	10	1.78
31057--31147	32	2.8	33	94	3	166	47	21	18	12	1.81
31166--31213	14	3.1	14	73	21	51	8	16	25	50	1.73
31159--31237	32	2.4	33	89	2	124	13	18	20	46	1.83
31222--31277	20	2.8	19	86	7	76	17	23	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33150--33185	14	2.6	14	90	0	54	30	0	22	47	1.52
33302--33369	19	3.8	19	81	14	92	47	16	22	14	1.82
33388--33445	20	2.9	20	97	0	107	15	22	24	37	1.93
34502--34555	24	2.2	24	90	0	81	24	16	20	38	1.92
34730--34754	12	2.1	12	100	0	50	72	0	28	0	0.86
37039--37169	19	7.7	19	63	23	76	44	19	21	14	1.86
37039--37165	33	3.8	33	84	4	184	44	19	21	14	1.87
37040--37172	66	2.0	66	94	0	230	42	19	21	16	1.89
37180--37236	14	3.7	14	75	20	60	8	24	22	43	1.81
37165--37254	33	2.7	33	94	0	153	13	22	21	43	1.87
37194--37254	19	3.5	19	72	21	69	11	22	21	44	1.84
37360--37396	14	2.6	14	91	0	65	45	24	0	29	1.53
38746--38949	42	4.9	42	72	7	139	23	18	36	22	1.95
38785--38946	41	3.9	42	77	2	175	23	17	37	21	1.94
38776--38949	83	2.1	83	94	2	305	24	17	37	21	1.94
39165--39350	91	2.0	91	89	7	288	46	19	12	22	1.83
39262--39288	13	2.1	13	100	0	54	70	22	7	0	1.12
41037--41142	33	2.9	37	75	16	112	44	18	23	13	1.85
41037--41142	19	5.7	19	76	14	105	44	18	23	13	1.85
41139--41192	19	2.8	19	85	2	81	11	18	24	46	1.81
41703--41755	20	2.7	20	93	0	88	26	20	28	24	1.99
41764--41817	20	2.7	20	94	0	90	25	16	24	33	1.96

Tables:   1

The End!