Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001690.1 Hibiscus syriacus cultivar Beakdansim tig00003377_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103024

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
309--347
14
3.2
12
83
16
53
48
17
0
33
1.48
14255--14287
16
2.1
16
94
0
57
33
6
27
33
1.81
22182--22207
13
2.0
13
100
0
52
84
0
7
7
0.77
23881--23978
24
4.1
24
86
0
133
34
19
37
8
1.81
23881--23978
48
2.0
48
90
0
151
34
19
37
8
1.81
23920--24139
12
18.3
12
68
10
83
35
19
37
8
1.82
23881--23994
24
4.8
24
84
1
122
36
19
35
7
1.81
23885--23992
48
2.2
48
86
0
144
36
20
35
8
1.83
23952--24124
36
4.8
36
86
0
229
34
19
36
9
1.84
23904--24139
60
3.7
60
69
14
177
34
19
37
8
1.82
23881--24136
24
10.7
24
73
10
121
34
19
37
7
1.81
24148--24213
24
2.8
24
70
9
62
46
18
28
6
1.72
24198--24273
12
6.3
12
73
0
62
43
17
27
11
1.84
24238--24323
24
3.6
24
75
12
86
39
16
34
9
1.80
25641--25737
30
3.3
29
87
4
133
41
11
10
37
1.75
25641--25744
29
3.6
29
88
3
138
41
11
9
37
1.74
25694--25777
29
2.8
30
76
12
73
47
7
10
34
1.66
25867--25925
29
2.0
29
93
0
100
25
11
11
50
1.73
31975--32038
29
2.2
29
94
2
112
31
21
14
32
1.93
32637--32679
4
10.8
4
94
0
59
25
41
0
32
1.56
32635--32687
12
4.4
12
87
0
61
26
37
0
35
1.57
34489--34517
2
14.5
2
100
0
58
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34503--34641
23
6.4
22
83
12
146
44
0
5
49
1.26
34503--34641
21
6.4
22
83
12
146
44
0
5
49
1.26
34577--34621
19
2.5
17
85
7
63
40
0
11
48
1.39
47659--47719
28
2.2
28
88
5
88
45
4
9
39
1.59
60248--60306
24
2.5
24
82
0
64
40
27
27
5
1.77
60350--60405
24
2.3
24
84
0
76
30
23
33
12
1.92
60395--60652
24
10.8
24
71
3
124
41
19
32
6
1.76
60396--60488
36
2.6
35
76
5
96
39
21
34
4
1.73
60395--60519
12
10.4
12
69
0
61
39
20
36
4
1.72
60458--60644
72
2.6
72
77
3
198
42
19
31
6
1.78
63040--63065
4
6.5
4
100
0
52
26
0
26
46
1.53
63644--63680
16
2.3
16
90
9
58
56
5
5
32
1.45
66024--66425
85
4.7
85
85
2
513
25
18
20
35
1.95
67893--68091
95
2.1
95
91
2
321
31
19
15
34
1.92
77817--77898
32
2.6
31
83
9
103
36
25
12
25
1.91
79608--79848
41
5.8
42
71
9
172
29
16
21
32
1.95
79615--79910
83
3.6
82
81
4
274
30
15
22
31
1.95
79750--79867
41
2.9
41
70
18
109
29
14
22
33
1.93
82018--82169
43
3.5
43
80
8
123
32
23
16
26
1.96
95360--95416
23
2.5
23
97
0
105
21
0
35
43
1.52
95483--95522
19
2.2
17
86
8
53
57
0
0
42
0.98

Tables:   1

The End!