Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001694.1 Hibiscus syriacus cultivar Beakdansim tig00003384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81571

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1450--1494
20
2.3
21
77
14
51
40
0
17
42
1.50
2788--2933
2
73.5
2
97
1
276
0
0
49
50
1.05
3309--3347
19
2.1
19
85
9
53
46
7
17
28
1.76
3395--3434
13
3.2
13
85
3
55
60
0
15
25
1.35
3399--3440
13
3.4
12
84
12
50
61
0
11
26
1.30
3801--4509
46
15.5
46
84
4
882
42
13
20
23
1.88
8200--8691
46
10.7
46
88
1
691
42
13
21
23
1.88
8200--8691
185
2.7
184
88
2
704
42
13
21
23
1.88
14802--14841
21
1.9
21
89
0
62
25
40
25
10
1.86
18189--18578
46
8.5
46
87
1
505
41
13
21
24
1.88
22935--22979
20
2.3
20
81
14
58
40
0
20
40
1.52
24263--24300
2
19.0
2
100
0
76
50
0
0
50
1.00
24653--24705
19
2.8
19
82
2
63
49
3
13
33
1.60
31259--31283
12
2.1
12
100
0
50
40
16
8
36
1.77
31330--31386
20
2.8
20
82
10
71
22
7
24
45
1.77
31734--31816
43
2.0
42
80
7
96
39
16
14
28
1.88
32811--32890
35
2.3
35
86
0
106
42
25
0
32
1.55
32940--33229
148
2.0
148
92
0
490
36
7
10
45
1.67
33730--33807
35
2.2
35
86
6
113
37
0
19
43
1.51
39004--39049
22
2.0
23
87
4
67
32
15
23
28
1.95
41803--41858
24
2.3
25
76
14
64
32
1
7
58
1.35
45911--45945
17
2.1
17
88
0
52
37
0
0
62
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45942--46018
24
3.2
24
66
23
61
46
2
6
44
1.43
45941--46030
25
3.6
25
68
17
69
46
2
7
43
1.44
46153--46205
14
4.1
13
76
14
56
39
11
5
43
1.64
54364--54426
24
2.9
21
75
13
56
30
20
25
23
1.99
54934--55010
22
3.5
22
87
0
109
18
22
27
32
1.97
61760--61816
21
2.9
21
92
7
93
56
0
24
19
1.42
61905--61973
22
3.1
22
87
4
86
17
20
31
30
1.95
68489--68610
20
6.1
20
72
16
99
34
22
19
22
1.97
68731--68788
22
2.6
22
94
0
98
22
43
15
18
1.88
69047--69089
20
2.2
20
91
4
70
44
25
18
11
1.84
69086--69127
20
2.1
20
86
0
57
14
19
21
45
1.85
73307--73358
19
2.7
20
87
3
70
23
13
25
38
1.91
73307--73377
20
3.6
20
86
1
81
22
15
22
39
1.92
73401--73454
20
2.7
20
80
8
74
27
11
31
29
1.91
74521--74562
13
3.2
13
83
16
59
30
4
19
45
1.71
74656--74702
12
3.7
13
80
13
62
44
0
0
55
0.99
74650--74702
24
2.1
24
83
16
63
41
1
0
56
1.10
81017--81053
18
2.1
18
95
5
67
29
24
21
24
1.99

Tables:   1

The End!