genome.fa.s1695.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001695.1 Hibiscus syriacus cultivar Beakdansim tig00003385_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103415

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14241--14300	30	2.0	31	93	6	106	33	6	16	43	1.74
14380--14479	22	4.8	19	86	10	101	23	34	21	22	1.97
14500--14573	20	3.7	20	85	3	103	18	28	24	28	1.98
14500--14582	41	2.0	41	92	0	139	19	28	25	26	1.98
17774--17833	29	2.0	30	93	6	104	35	6	15	43	1.72
19494--19539	15	3.0	15	90	3	65	26	21	15	36	1.93
23523--23566	3	16.0	3	82	17	51	29	0	2	68	1.02
23520--23566	16	3.0	16	81	3	60	29	0	2	68	1.02
23513--23556	23	2.0	23	91	8	74	22	0	4	72	1.02
25123--25167	16	2.6	17	86	10	56	35	2	4	57	1.31
25543--25582	11	3.3	13	80	13	50	50	2	0	47	1.14
27355--27411	28	2.1	26	83	6	69	33	5	1	59	1.30
28903--28944	7	6.0	7	81	8	50	14	16	14	54	1.71
28903--28944	15	3.0	14	83	10	50	14	16	14	54	1.71
29003--29030	12	2.3	12	100	0	56	25	14	7	53	1.66
30985--31068	15	5.6	14	71	17	62	80	2	15	1	0.87
30985--31069	7	11.4	7	71	16	55	81	2	15	1	0.86
30996--31071	32	2.5	30	85	10	109	84	2	11	1	0.79
30992--31077	10	8.8	10	75	15	74	81	2	15	1	0.85
30981--31068	16	5.6	15	78	11	88	80	2	15	1	0.87
34924--34978	22	2.5	22	84	0	74	36	9	14	40	1.78
35656--35900	76	3.2	76	94	0	418	25	20	20	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35932--36457	113	4.7	113	89	0	714	37	13	19	29	1.90
36374--36702	122	2.7	123	86	5	422	39	14	18	26	1.90
36949--36978	10	2.8	11	90	10	53	36	0	0	63	0.95
36949--36990	21	2.1	21	83	12	54	42	0	0	57	0.99
38540--38608	32	2.3	31	82	9	88	43	4	2	49	1.37
38895--38934	11	3.3	13	80	13	50	50	2	0	47	1.14
39311--39347	17	2.2	17	100	0	74	56	5	13	24	1.58
41877--41937	26	2.3	26	97	0	113	21	24	26	27	1.99
48077--48114	20	1.9	20	88	0	58	39	0	5	55	1.23
48558--48589	16	2.0	16	100	0	64	31	25	0	43	1.55
50283--50341	29	2.0	29	100	0	118	23	13	13	49	1.78
54955--55013	29	2.0	29	96	0	109	23	11	13	50	1.74
61654--61694	17	2.4	17	95	0	73	46	0	7	46	1.30
61664--61761	51	1.9	52	93	2	171	41	4	6	47	1.47
62417--62496	23	3.3	23	81	10	88	35	27	15	22	1.94
62421--62473	26	2.0	26	100	0	106	37	28	11	22	1.89
62602--62636	16	2.2	16	94	0	61	68	17	5	8	1.35
64781--64863	30	2.7	30	90	3	121	43	6	6	44	1.53
64961--65026	2	31.0	2	74	17	53	48	3	4	43	1.38
64941--65008	31	2.2	31	84	5	84	45	2	5	45	1.42
64961--65026	18	3.6	18	83	8	80	48	3	4	43	1.38
64966--65022	20	2.9	20	85	12	66	49	1	5	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64966--65107	50	2.9	49	85	7	182	45	4	8	41	1.56
65069--65133	31	2.2	29	91	5	103	38	6	10	44	1.64
65104--65218	18	5.9	18	74	18	97	40	6	9	42	1.64
65146--65218	38	1.9	37	91	5	119	41	6	9	42	1.64
65243--65288	18	2.6	17	79	3	56	41	6	8	43	1.61
65262--65328	33	2.1	32	86	8	91	50	4	5	38	1.47
65279--65348	20	3.2	20	72	18	68	54	1	5	38	1.33
65413--65463	17	2.9	17	82	2	66	50	5	1	41	1.37
65536--65596	27	2.2	28	88	2	88	39	4	8	47	1.55
65573--65661	20	4.6	20	72	20	73	43	6	2	47	1.42
65595--65657	20	3.0	22	77	17	87	42	6	3	47	1.44
65564--65669	42	2.5	42	83	10	135	42	6	2	48	1.44
65695--66299	216	2.8	214	92	3	1006	29	11	8	50	1.68
67934--68019	23	3.7	23	77	13	88	30	26	22	20	1.98
68108--68216	57	1.9	57	84	0	146	40	16	8	34	1.78
69413--69626	110	1.9	110	91	0	347	37	17	8	35	1.80
75512--75545	14	2.4	14	85	5	50	52	0	5	41	1.25
76966--77006	21	2.0	21	85	0	55	68	2	7	21	1.26
77567--77600	2	17.0	2	100	0	68	50	0	0	50	1.00
77850--78213	157	2.4	154	78	8	363	48	6	16	28	1.71
79475--79524	20	2.5	20	87	12	68	32	28	16	24	1.96
80588--81199	5	120.8	5	94	2	279	45	19	14	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80592--80820	15	15.3	15	93	0	368	41	21	16	20	1.91
80797--81191	15	25.9	15	94	2	322	47	19	13	19	1.82
80592--80820	10	22.9	10	92	0	368	41	21	16	20	1.91
80821--81119	10	29.9	10	99	0	535	42	20	17	20	1.89
81076--81199	11	11.5	11	94	2	168	63	16	0	18	1.36
81199--81276	5	15.6	5	97	0	147	42	17	0	39	1.50
81281--81329	5	9.8	5	95	0	71	40	12	20	26	1.87
83265--83290	3	8.7	3	100	0	52	69	0	0	30	0.89
86229--86375	72	2.0	73	97	1	278	27	4	19	48	1.66
86476--86605	44	3.0	43	77	2	134	28	23	15	33	1.95
86804--86925	43	2.8	43	86	0	172	37	26	9	26	1.87
88015--88056	16	2.8	15	89	7	59	16	21	11	50	1.77
98624--98713	42	2.2	41	80	9	94	37	16	20	25	1.93
100479--100634	44	3.6	44	74	3	145	32	20	16	30	1.95

Tables:   1

The End!