genome.fa.s1697.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001697.1 Hibiscus syriacus cultivar Beakdansim tig00003390_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121491

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2265--2325	29	2.1	30	87	3	88	36	3	22	37	1.71
7810--7876	23	2.9	23	82	4	73	22	23	20	32	1.98
8705--8757	20	2.5	20	78	9	52	32	0	3	64	1.12
9656--9695	16	2.5	16	95	0	71	35	20	37	7	1.81
11220--11284	3	21.7	3	78	6	51	32	43	1	23	1.63
11238--11286	6	8.2	6	86	0	71	32	48	0	18	1.48
11220--11284	12	5.4	12	83	5	69	32	43	1	23	1.63
13241--13336	4	23.0	4	72	16	70	67	4	1	27	1.15
13252--13348	19	5.1	19	78	12	94	65	6	1	26	1.22
13238--13298	23	2.7	22	82	7	68	63	3	1	31	1.20
13266--13332	34	1.9	35	87	3	100	65	4	1	28	1.21
13241--13364	57	2.2	54	78	14	133	66	4	2	25	1.23
15239--15271	17	1.9	17	100	0	66	42	9	6	42	1.61
15379--15427	2	24.5	2	100	0	98	48	0	0	51	1.00
20947--21141	98	2.0	97	97	1	372	32	16	25	25	1.96
22024--22068	22	2.1	22	88	12	67	46	0	0	53	1.00
22033--22139	40	2.7	40	78	8	119	53	0	0	45	1.06
22036--22138	20	5.3	18	70	19	64	54	0	0	44	1.06
23936--24162	66	3.5	66	76	11	252	29	1	43	25	1.65
24026--24067	18	2.3	18	87	0	57	40	2	38	19	1.64
24995--25035	3	14.0	3	94	5	75	31	0	0	68	0.90
26525--26752	117	1.9	117	81	7	275	38	8	8	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28781--28822	7	6.0	7	81	8	50	14	16	14	54	1.71
28781--28822	15	3.0	14	83	10	50	14	16	14	54	1.71
31380--31421	20	2.1	20	86	0	57	45	7	23	23	1.78
32956--33757	115	7.0	115	94	0	1372	34	15	19	31	1.93
35693--35770	40	2.0	40	100	0	156	34	11	23	30	1.90
35733--35875	54	2.7	54	79	4	159	35	14	23	25	1.93
36667--37234	113	5.0	113	91	3	861	38	14	19	28	1.91
37149--37377	120	1.9	121	84	9	315	38	15	20	24	1.92
37577--37609	3	11.0	3	100	0	66	33	0	0	66	0.92
38777--38805	15	1.9	15	100	0	58	44	0	0	55	0.99
39212--39254	20	2.2	20	86	0	59	32	0	2	65	1.06
45812--45887	21	3.6	21	92	0	116	18	18	35	27	1.94
51359--51399	20	2.0	20	95	0	73	39	9	17	34	1.82
51367--51410	20	2.2	20	87	0	61	40	9	13	36	1.76
51728--51771	18	2.4	18	80	0	52	45	0	13	40	1.44
52322--52354	17	1.9	17	100	0	66	75	0	0	24	0.80
60709--61103	43	9.6	42	75	8	303	33	18	22	26	1.97
60748--60906	85	1.9	85	85	2	221	38	19	19	22	1.94
60887--60945	30	2.0	30	100	0	118	27	13	23	35	1.92
60845--60989	72	2.0	72	84	5	186	30	16	23	29	1.96
60917--61103	85	2.2	85	83	1	241	31	17	23	27	1.97
60785--61066	157	1.8	156	81	2	359	32	18	22	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65004--65287	41	6.9	41	83	2	309	36	20	17	25	1.95
64987--65287	82	3.6	82	84	3	343	35	20	18	25	1.95
65045--65285	124	1.9	125	86	0	340	36	20	17	24	1.94
65004--65371	41	9.0	40	78	7	269	36	20	16	25	1.94
67333--67379	24	2.0	24	95	0	85	48	21	25	4	1.68
67698--67736	19	2.1	19	85	0	51	43	0	5	51	1.24
67744--67811	21	3.3	21	70	15	61	54	2	1	41	1.24
70081--70140	2	30.0	2	100	0	120	50	0	0	50	1.00
72267--72314	18	2.7	18	96	0	87	14	16	10	58	1.63
72218--72420	100	2.0	100	94	0	352	25	14	8	51	1.71
72367--72418	18	2.9	18	88	0	77	15	21	7	55	1.64
72477--72558	25	3.1	27	68	15	73	50	0	2	47	1.14
77526--77631	49	2.1	51	92	7	180	32	14	31	22	1.93
78685--78717	15	2.2	15	89	10	50	48	12	18	21	1.80
79456--79523	30	2.3	31	92	5	113	47	20	4	27	1.69
79581--79637	29	2.0	29	89	0	87	40	24	8	26	1.84
79687--79723	19	1.9	19	88	0	56	32	27	21	18	1.97
85128--85161	18	1.9	18	88	5	52	64	14	0	20	1.28
86390--86456	29	2.3	30	89	2	100	46	22	4	26	1.71
89931--89974	2	22.0	2	100	0	88	50	0	0	50	1.00
92110--92157	18	2.7	18	96	0	87	14	16	10	58	1.63
92061--92263	100	2.0	100	94	0	352	25	14	8	51	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92210--92261	18	2.9	18	88	0	77	15	21	7	55	1.64
92320--92401	25	3.1	27	68	15	73	50	0	2	47	1.14
94133--94314	91	2.0	91	97	0	346	28	15	24	32	1.95
97474--97569	50	2.0	50	95	4	178	30	14	35	19	1.92
98834--98955	61	2.0	61	85	0	163	29	27	18	25	1.98
100423--100491	30	2.3	31	78	12	72	31	23	7	37	1.82
103350--103393	12	3.6	12	81	3	52	27	20	2	50	1.60
103418--103512	19	5.0	19	80	2	75	33	18	7	40	1.79
105151--105189	20	2.0	20	84	0	51	46	17	0	35	1.49
108153--108205	15	3.6	14	80	7	52	22	15	1	60	1.44
109729--109913	64	2.9	63	82	11	214	27	20	22	30	1.98
109757--109913	65	2.4	64	88	5	228	28	19	21	31	1.97
109754--109961	65	3.2	63	79	12	217	26	19	23	31	1.98
110559--110587	2	14.5	2	100	0	58	51	0	0	48	1.00
111004--111047	21	2.1	21	82	0	52	40	13	36	9	1.76
112588--112668	23	3.6	22	76	6	83	24	24	27	23	2.00
118462--118568	45	2.3	46	85	4	146	28	17	22	30	1.97
120494--120614	21	5.7	21	80	8	147	22	36	17	23	1.95

Tables:   1

The End!