Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001698.1 Hibiscus syriacus cultivar Beakdansim tig00003391_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82498

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3609--3658
20
2.5
20
90
9
75
16
22
44
18
1.87
6236--6295
22
2.7
23
81
2
77
15
26
33
25
1.95
19138--19169
15
2.0
17
88
11
50
46
9
43
0
1.35
19618--19657
21
1.9
21
89
0
62
57
5
7
30
1.48
23389--23471
23
3.6
22
80
7
94
21
27
21
28
1.99
24710--24799
40
2.2
40
96
4
162
40
7
21
31
1.81
28558--28586
14
2.0
15
93
6
51
62
27
3
6
1.37
36429--36481
19
2.8
19
94
0
88
20
13
32
33
1.91
36319--36461
65
2.2
64
86
6
191
27
19
23
30
1.98
37253--37362
34
3.1
34
66
16
80
56
20
5
18
1.61
37085--37364
73
3.9
72
88
3
402
53
17
5
22
1.64
37098--37360
144
1.8
145
89
2
413
54
18
6
21
1.65
48892--48931
18
2.2
19
90
4
64
75
0
0
25
0.81
50780--51148
57
6.5
57
92
2
607
33
19
11
36
1.87
55150--55264
45
2.6
45
77
2
133
25
19
7
47
1.75
55815--56226
57
7.3
57
92
1
686
33
19
10
35
1.87
55815--56226
169
2.4
170
92
2
684
33
19
10
35
1.87
55815--56226
226
1.8
227
92
2
702
33
19
10
35
1.87
58286--58337
3
16.7
3
84
7
68
69
0
1
28
0.99
58452--58570
35
3.4
34
78
10
125
38
6
5
49
1.51
69961--69989
13
2.1
14
93
6
51
68
0
0
31
0.89
71435--71630
34
5.6
34
81
6
214
41
10
4
43
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71356--71630
72
3.9
69
78
8
238
41
10
4
43
1.58
73719--73747
13
2.1
14
93
6
51
68
0
0
31
0.89
73729--73763
18
1.9
18
88
0
52
68
0
5
25
1.11
73753--73780
12
2.3
12
100
0
56
53
0
14
32
1.41

Tables:   1

The End!