genome.fa.s1699.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001699.1 Hibiscus syriacus cultivar Beakdansim tig00003394_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104537

Tables:   1   

This is table  1  of  1  ( 72 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773--807	17	2.1	17	89	5	54	48	28	5	17	1.69
6142--6193	23	2.2	25	86	13	74	48	9	3	38	1.54
18376--18491	60	1.9	60	86	6	164	32	10	18	38	1.84
18389--18504	60	1.9	60	82	3	144	32	12	16	37	1.87
19154--19206	21	2.7	19	76	21	63	30	11	11	47	1.74
21382--21406	2	12.5	2	100	0	50	48	0	0	52	1.00
21545--21702	21	7.8	20	70	7	77	38	24	17	19	1.92
21669--21862	20	9.6	20	80	5	212	35	25	19	19	1.95
21669--21862	60	3.2	60	84	0	253	35	25	19	19	1.95
22245--22315	33	2.2	33	92	0	115	11	22	18	47	1.80
22395--22504	21	5.8	20	74	17	108	45	18	24	11	1.83
22388--22504	41	3.1	38	81	14	145	46	17	25	11	1.81
22455--22511	14	3.7	14	75	20	60	43	22	24	8	1.81
22447--22527	33	2.5	33	95	0	144	46	22	22	8	1.78
22523--22650	19	7.1	19	71	19	87	10	25	18	45	1.82
22545--22601	14	3.7	14	75	20	60	8	24	22	43	1.81
22528--22650	33	3.5	33	88	10	165	10	24	18	46	1.81
22586--22650	21	3.1	21	82	4	96	10	26	15	47	1.78
24347--24815	93	5.1	93	99	0	922	21	12	19	46	1.83
24863--24991	19	7.3	19	75	17	125	45	28	17	8	1.77
24899--24991	33	2.8	32	91	4	150	46	27	18	7	1.76
24863--24991	52	2.5	52	74	14	140	45	28	17	8	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24987--25159	19	9.6	19	78	12	168	10	19	23	46	1.81
25009--25065	14	3.7	14	77	20	60	10	21	22	45	1.82
24987--25159	33	4.8	38	82	5	168	10	19	23	46	1.81
27085--27120	14	2.6	14	95	0	63	33	0	22	44	1.53
27227--27324	19	5.4	19	84	13	143	45	17	22	14	1.84
27227--27343	53	2.2	53	98	1	227	44	17	23	13	1.85
27333--27483	19	8.7	19	72	21	143	15	21	18	45	1.86
27333--27452	52	2.3	52	95	1	213	15	22	17	45	1.85
27390--27497	33	3.2	33	87	7	173	12	21	19	46	1.83
29778--29802	12	2.1	12	100	0	50	0	28	0	72	0.86
29977--30023	24	2.0	24	87	8	69	38	21	14	25	1.92
30706--30935	40	5.8	39	83	5	210	20	18	24	36	1.95
30706--30896	20	9.6	20	80	6	158	21	18	24	34	1.96
30706--30896	60	3.2	60	83	3	206	21	18	24	34	1.96
30883--30936	20	2.7	20	88	5	74	11	18	25	44	1.83
30728--30935	60	3.5	59	78	3	202	19	19	25	36	1.95
30922--31004	21	4.0	21	75	6	78	25	15	24	34	1.95
30902--31000	42	2.4	43	77	11	100	21	17	23	38	1.93
31374--31407	16	2.1	16	94	0	59	26	8	26	38	1.85
37750--37801	17	3.1	17	76	15	54	44	0	3	51	1.19
44487--44515	2	14.5	2	100	0	58	51	0	0	48	1.00
48661--48775	45	2.6	45	90	0	176	24	22	6	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48944--49073	68	1.9	68	90	0	206	29	25	13	31	1.94
49475--50129	57	11.5	57	91	0	988	33	19	10	36	1.87
50489--50544	22	2.5	22	91	0	85	32	12	17	37	1.88
57558--57582	10	2.5	10	100	0	50	8	8	20	64	1.46
60036--60079	23	1.9	23	90	0	70	22	31	11	34	1.90
60832--60915	39	2.2	39	93	0	141	23	20	10	45	1.82
65144--65233	20	4.5	20	74	10	85	26	24	15	33	1.95
65186--65251	20	3.3	20	72	16	55	25	21	15	37	1.92
65239--65287	18	2.7	18	96	0	89	18	20	14	46	1.83
65435--65465	16	1.9	16	93	0	53	29	3	0	67	1.06
66224--66301	24	3.2	24	94	0	129	21	20	19	38	1.94
67394--67424	14	2.2	14	100	0	62	41	12	22	22	1.88
68886--68939	20	2.7	20	91	5	83	42	22	14	20	1.88
68881--68946	20	3.3	20	80	6	80	36	21	19	22	1.95
70531--70647	21	5.7	20	83	1	81	21	17	39	21	1.93
70555--70651	21	4.6	21	87	3	142	22	18	37	21	1.95
70534--70655	42	2.9	42	88	1	183	22	18	38	21	1.93
70795--70832	4	9.5	4	88	0	58	71	2	0	26	1.00
72644--72686	20	2.2	20	91	0	68	55	18	13	11	1.68
72717--72755	20	2.0	20	100	0	78	15	12	20	51	1.76
72719--72762	20	2.2	20	91	0	70	15	13	20	50	1.78
73232--73269	20	2.0	20	84	5	51	44	13	15	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73240--73282	19	2.2	20	87	4	61	39	18	18	23	1.92
76826--76871	2	23.0	2	100	0	92	50	0	0	50	1.00
77524--77594	34	2.1	34	97	0	133	2	23	39	33	1.70
95241--95272	11	2.9	11	100	0	64	28	0	9	62	1.26
97725--97885	65	2.5	65	79	5	175	27	18	24	29	1.98
99984--100022	13	3.1	13	88	3	53	48	2	7	41	1.45

Tables:   1

The End!