genome.fa.s17.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000017.1 Hibiscus syriacus cultivar Beakdansim tig00000032_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94146

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2762--2840	23	3.4	23	87	0	113	25	27	27	18	1.98
4444--4484	18	2.3	18	87	8	57	46	19	34	0	1.50
10845--10887	20	2.2	20	91	0	68	34	11	18	34	1.87
16467--16502	6	5.8	6	87	6	54	86	0	13	0	0.58
16464--16503	12	3.2	12	86	6	62	87	0	12	0	0.54
16465--16501	13	2.9	13	92	4	58	86	0	13	0	0.57
17115--17157	20	2.2	20	91	0	68	32	11	20	34	1.89
18715--18791	24	3.3	23	82	7	86	27	23	23	25	2.00
18715--18802	23	3.8	24	82	5	92	29	22	22	25	1.99
18943--18980	19	2.0	20	89	5	60	42	26	0	31	1.56
21065--21111	20	2.4	19	82	6	58	53	4	10	31	1.55
22834--22878	17	2.6	17	89	6	65	26	2	11	60	1.42
26362--26396	2	17.5	2	100	0	70	48	0	0	51	1.00
27572--27638	10	6.8	10	69	16	50	20	29	25	23	1.99
29777--29845	24	2.9	24	80	8	86	15	13	17	53	1.73
29775--29839	12	5.5	11	71	20	51	15	13	16	53	1.73
32897--32955	24	2.5	24	86	2	84	55	6	18	18	1.64
45548--46052	127	3.9	127	79	7	498	28	18	24	28	1.98
45548--46023	128	3.7	127	81	5	474	29	18	25	27	1.98
45540--46103	129	4.4	130	77	11	471	29	17	25	27	1.98
47111--47193	32	2.6	32	84	0	112	37	26	9	26	1.87
48234--48281	10	4.9	9	80	16	51	2	16	0	81	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48228--48274	5	9.0	5	82	17	60	0	19	0	80	0.70
48229--48281	15	3.5	15	85	12	72	1	16	0	81	0.79
48228--48283	21	2.7	21	83	8	71	1	19	0	78	0.84
52179--52228	27	1.9	25	92	8	82	56	10	16	18	1.67
54339--54493	30	5.2	29	71	7	87	60	8	9	22	1.54
55204--55232	14	2.1	14	100	0	58	6	20	17	55	1.65
56075--56125	3	17.0	3	84	8	68	62	0	1	35	1.06
59616--59750	51	2.7	51	82	1	182	45	15	14	25	1.83
60464--60534	25	2.8	25	89	8	85	39	5	9	45	1.61
60478--60533	25	2.3	24	93	3	94	35	7	10	46	1.66
62686--62742	27	2.1	27	83	6	71	10	29	17	42	1.83
63201--63309	10	12.4	9	74	15	56	73	0	3	22	0.99
63201--63309	17	6.2	17	70	18	73	73	0	3	22	0.99
63230--63309	17	4.8	16	75	21	76	76	0	3	20	0.94
63234--63306	24	2.9	27	78	13	77	76	0	4	19	0.94
63233--63306	12	6.4	11	74	21	62	77	0	4	18	0.93
63234--63307	26	2.9	26	70	20	66	77	0	4	18	0.93
63238--63311	25	2.9	27	78	11	84	74	0	5	20	1.01
63372--63406	4	8.8	4	100	0	70	77	0	0	22	0.78
64541--64605	14	4.8	13	78	14	60	78	1	3	16	0.96
64550--64608	19	3.1	18	78	9	64	76	1	3	18	1.02
64540--64595	9	6.0	9	76	13	51	76	1	1	19	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64543--64596	10	5.5	10	75	18	51	77	1	1	18	0.95
64546--64613	21	3.2	21	74	16	59	75	1	2	20	1.02
64541--64613	34	2.2	34	80	11	80	76	1	2	19	0.98
64716--64907	46	4.1	47	74	9	162	46	5	3	45	1.41
64762--65137	37	9.5	37	75	19	275	46	5	3	44	1.43
64837--64869	2	16.5	2	100	0	66	48	0	0	51	1.00
64751--64948	93	2.1	94	96	2	366	46	4	3	45	1.39
64799--64907	56	2.0	54	94	3	191	46	3	2	46	1.34
65871--66003	69	1.9	69	86	3	187	24	22	21	30	1.99
65936--66095	84	1.9	84	93	0	275	25	21	20	32	1.98
71705--71825	42	2.9	41	78	13	111	76	0	4	18	0.99
71702--71827	25	5.5	23	68	21	77	76	0	3	18	0.98
71705--71827	9	13.0	9	71	14	63	77	0	4	17	0.98
71695--71827	18	7.4	17	71	17	74	77	0	4	17	0.98
71705--71798	41	2.3	40	84	15	113	77	0	4	18	0.92
71718--71789	34	2.1	37	84	10	98	76	0	5	18	0.97
73055--73116	26	2.5	25	80	14	76	77	0	1	20	0.85
73054--73116	17	4.0	14	77	22	63	77	0	1	20	0.85
73140--73668	38	14.8	36	74	16	258	47	6	2	43	1.41
73339--73422	2	42.5	2	97	2	161	50	0	0	50	1.00
73408--73669	35	7.5	33	77	15	176	45	6	3	44	1.46
73408--73628	66	3.2	66	79	16	218	45	5	4	44	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73702--73760	3	19.7	3	100	0	118	67	0	0	32	0.91
74482--74558	38	2.0	38	100	0	154	33	10	9	46	1.70
74925--74990	28	2.4	28	97	0	123	7	15	21	56	1.64
75903--75953	23	2.2	23	92	0	84	23	15	17	43	1.88
81646--82031	143	2.5	151	79	13	402	46	6	5	40	1.54
82011--82064	26	2.1	25	83	10	65	55	1	0	42	1.10
82078--82143	11	5.8	11	73	19	64	65	1	4	28	1.21
82075--82143	23	3.0	23	77	14	79	63	1	5	28	1.26
82172--82212	22	1.9	22	85	5	57	65	2	2	29	1.18
83378--83445	3	22.0	3	85	5	91	60	0	0	39	0.97
83378--83445	31	2.2	31	89	5	111	60	0	0	39	0.97
83669--83754	35	2.5	35	84	0	100	40	20	1	37	1.61
83723--83765	21	2.0	21	100	0	86	46	13	0	39	1.44
83888--83924	15	2.4	16	86	13	51	32	2	5	59	1.34
84386--84633	130	1.9	130	91	0	406	36	13	14	35	1.86
89117--89143	4	6.8	4	100	0	54	25	0	0	74	0.83

Tables:   1

The End!