genome.fa.s170.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000170.1 Hibiscus syriacus cultivar Beakdansim tig00000299_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93106

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1214--1376	84	2.0	81	84	10	215	30	7	19	42	1.80
2281--2715	42	10.7	42	86	8	569	17	22	25	34	1.96
2324--2382	30	2.0	30	93	0	100	23	18	27	30	1.98
2354--2715	123	2.9	125	90	3	559	17	22	24	34	1.96
2281--2715	164	2.7	165	89	5	629	17	22	25	34	1.96
3841--3926	21	4.1	21	84	3	120	25	15	27	31	1.95
3848--3929	41	2.0	41	88	4	121	26	12	28	32	1.92
6331--6358	13	2.2	13	100	0	56	35	7	25	32	1.83
6960--7062	54	1.9	54	83	0	134	30	8	26	34	1.87
10329--10674	85	4.1	85	83	2	446	26	20	18	34	1.96
10691--11052	85	4.3	85	82	3	442	26	17	21	34	1.95
10467--10899	228	1.9	227	86	3	611	25	18	20	35	1.95
10677--11052	168	2.2	169	85	2	513	26	18	20	34	1.95
10981--11111	69	1.9	69	91	0	217	27	18	19	34	1.95
11193--11284	32	2.8	31	75	6	85	20	15	28	35	1.93
13128--13307	99	1.8	99	86	2	263	31	18	16	32	1.94
21314--21351	20	2.0	20	89	5	60	26	0	5	68	1.11
26069--26114	20	2.3	19	82	10	56	50	0	2	47	1.13
26385--26415	2	15.5	2	100	0	62	51	0	0	48	1.00
39725--40472	253	2.9	257	89	5	1104	40	19	12	27	1.87
40578--40629	23	2.3	23	96	0	95	34	25	15	25	1.95
41461--41502	18	2.3	18	95	4	75	66	7	26	0	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45977--46017	21	2.0	21	85	0	55	19	2	4	73	1.13
60936--60989	19	2.7	20	88	5	74	18	16	27	37	1.93
60883--60989	40	2.6	42	76	7	103	20	14	26	38	1.92
60883--60992	21	5.3	21	72	10	84	20	14	27	37	1.92
61825--61876	17	3.1	17	91	0	77	21	23	15	40	1.91
68938--68986	20	2.5	20	86	6	64	38	12	16	32	1.86
69644--69709	23	3.0	23	84	10	84	28	18	25	27	1.98
69645--69710	21	3.0	22	80	12	75	28	16	25	28	1.97
72599--72724	45	2.8	46	85	3	166	25	17	11	46	1.81
72620--72698	20	3.7	20	74	21	70	22	20	12	44	1.85
72607--72842	26	10.0	26	71	21	189	24	19	10	45	1.82
72711--72874	46	3.6	46	94	0	274	23	21	10	44	1.83
72640--72796	72	2.2	71	89	1	242	23	19	11	45	1.83
72737--72862	20	5.7	20	72	20	90	23	24	10	42	1.85
78647--78698	20	2.6	20	96	0	95	19	32	9	38	1.84
78667--78896	46	5.0	46	90	1	345	23	23	10	43	1.84
78687--78864	26	7.6	25	67	21	116	22	22	10	44	1.83
78761--78835	20	3.5	20	73	19	69	24	25	9	41	1.84
81755--81876	53	2.3	54	88	1	183	27	18	22	31	1.98
83884--83918	15	2.4	15	90	4	54	45	2	0	51	1.16
83883--83927	23	2.0	23	86	8	65	46	2	0	51	1.13
84055--84334	155	1.8	152	83	3	373	47	6	6	39	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84049--84369	155	2.1	152	78	11	341	48	6	5	38	1.52
84374--84425	13	3.9	13	84	2	68	65	0	1	32	1.04
85638--85694	3	19.0	3	92	7	98	68	0	0	31	0.90
85936--85997	17	3.4	17	71	16	52	19	19	6	54	1.65
86059--86755	123	5.7	123	87	3	953	25	19	14	39	1.90
88511--88677	75	2.2	75	83	2	201	31	22	15	31	1.95
88736--88836	40	2.6	39	75	10	100	29	24	14	30	1.95
91101--91308	65	3.2	63	80	11	208	32	24	17	26	1.97
91274--91309	18	2.1	18	89	5	56	36	22	13	27	1.92

Tables:   1

The End!