Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001700.1 Hibiscus syriacus cultivar Beakdansim tig00003398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2632955
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 11
Found at i:690536 original size:10 final size:9
Alignment explanation
Indices: 690520--690589 Score: 79
Period size: 10 Copynumber: 7.6 Consensus size: 9
690510 AAATAAGAGC
690520 GAAAAGAAA
1 GAAAAGAAA
690529 GCAAAAGAAA
1 G-AAAAGAAA
*
690539 GAGAAAAAAA
1 GA-AAAGAAA
*
690549 GAGAAGAAA
1 GAAAAGAAA
690558 GAAAAGAAA
1 GAAAAGAAA
690567 G-AAAGAAA
1 GAAAAGAAA
*
690575 AAGAAAGAAA
1 GA-AAAGAAA
690585 GAAAA
1 GAAAA
690590 CCAATCAAGT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
8 7 0.14
9 19 0.37
10 25 0.49
ACGTcount: A:0.76, C:0.01, G:0.23, T:0.00
Consensus pattern (9 bp):
GAAAAGAAA
Found at i:690539 original size:4 final size:4
Alignment explanation
Indices: 690522--690588 Score: 61
Period size: 4 Copynumber: 16.8 Consensus size: 4
690512 ATAAGAGCGA
*
690522 AAAG AAAG CAAAAG AAAG --AG AAAA AAAG AGAAG AAAG AAAAG AAAG
1 AAAG AAAG --AAAG AAAG AAAG AAAG AAAG A-AAG AAAG -AAAG AAAG
690568 AAAG -AA- AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAA
690589 ACCAATCAAG
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
2 2 0.04
3 4 0.08
4 35 0.66
5 8 0.15
6 4 0.08
ACGTcount: A:0.76, C:0.01, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:690539 original size:14 final size:13
Alignment explanation
Indices: 690522--690589 Score: 91
Period size: 14 Copynumber: 4.9 Consensus size: 13
690512 ATAAGAGCGA
690522 AAAGAAAGCAAAAG
1 AAAGAAAG-AAAAG
*
690536 AAAGAGAAAAAAAG
1 AAAGA-AAGAAAAG
690550 AGAAGAAAGAAAAG
1 A-AAGAAAGAAAAG
690564 AAAGAAAGAAAAAG
1 AAAGAAAG-AAAAG
690578 AAAGAAAGAAAA
1 AAAGAAAGAAAA
690590 CCAATCAAGT
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
13 11 0.22
14 32 0.65
15 6 0.12
ACGTcount: A:0.76, C:0.01, G:0.22, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAAG
Found at i:690583 original size:23 final size:22
Alignment explanation
Indices: 690532--690589 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
690522 AAAGAAAGCA
*
690532 AAAGAAAGAGAAAAAAAGAGAAG
1 AAAGAAA-AGAAAAAAAGAAAAG
*
690555 AAAGAAAAGAAAGAAAGAAAAAG
1 AAAGAAAAGAAAAAAAG-AAAAG
690578 AAAG-AAAGAAAA
1 AAAGAAAAGAAAA
690590 CCAATCAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 16 0.52
23 15 0.48
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (22 bp):
AAAGAAAAGAAAAAAAGAAAAG
Found at i:701693 original size:118 final size:118
Alignment explanation
Indices: 701468--701682 Score: 304
Period size: 118 Copynumber: 1.8 Consensus size: 118
701458 TTTCCCATAT
* * * *
701468 GAGAGTTCATAATGAGAATAACTCATTCGATGAGGGAGAAGAACTTCATAATAAGAAGAACTTGA
1 GAGAGTTCATAATGAGAAGAAATCATCCGATAAGGGAGAAGAACTTCATAATAAGAAGAACTTGA
* * **
701533 TCAACATTGGTTCGATTCCATCACAAAATTAGGTGAATCAACATTTCCAATGG
66 TCAACATTAGCTCGATTCCATCACAAAAGGAGGTGAATCAACATTTCCAATGG
* * *
701586 GAGAGTTCATAATGAGAAGAAATCATCCGATAAGGGAGAAGAAGTTCATAATGAGAAGAACTTGT
1 GAGAGTTCATAATGAGAAGAAATCATCCGATAAGGGAGAAGAACTTCATAATAAGAAGAACTTGA
* * *
701651 TCAACCTTAGCTCGATTCCATCATAGAAGGAG
66 TCAACATTAGCTCGATTCCATCACAAAAGGAG
701683 TTGGAACAAC
Statistics
Matches: 83, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
118 83 1.00
ACGTcount: A:0.39, C:0.15, G:0.21, T:0.25
Consensus pattern (118 bp):
GAGAGTTCATAATGAGAAGAAATCATCCGATAAGGGAGAAGAACTTCATAATAAGAAGAACTTGA
TCAACATTAGCTCGATTCCATCACAAAAGGAGGTGAATCAACATTTCCAATGG
Found at i:701957 original size:117 final size:117
Alignment explanation
Indices: 701751--701969 Score: 343
Period size: 117 Copynumber: 1.9 Consensus size: 117
701741 ACTTTGTTTA
* * *
701751 ATTCCATCACAGAAGGAGGGGAGTCAACATTTCCAATGAATAGTTTATAATGAGAAGAACTCATC
1 ATTCCATCACAGAAGGAGGGGAGTCAAAATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATC
*
701816 CGATGAATGAGAAGAAGTTCATAATAAGAAGAACTTGCTTAACCTTGGTTCG
66 CGATGAAGGAGAAGAAGTTCATAATAAGAAGAACTTGCTTAACCTTGGTTCG
* *
701868 ATTCCATCACAGAAGGAGGAGGA-TTAAAATTTCCAAT-AGAGAGTTCATAATGAGAATAACTCA
1 ATTCCATCACAGAAGGAGG-GGAGTCAAAATTTCCAATGA-AGAGTTCATAATGAGAAGAACTCA
*
701931 TCCGATGAGGGAGAAGAAGTTCATAATAAGAAGAACTTG
64 TCCGATGAAGGAGAAGAAGTTCATAATAAGAAGAACTTG
701970 TTCATCCTCA
Statistics
Matches: 93, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
116 1 0.01
117 89 0.96
118 3 0.03
ACGTcount: A:0.40, C:0.14, G:0.22, T:0.24
Consensus pattern (117 bp):
ATTCCATCACAGAAGGAGGGGAGTCAAAATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATC
CGATGAAGGAGAAGAAGTTCATAATAAGAAGAACTTGCTTAACCTTGGTTCG
Found at i:701988 original size:117 final size:117
Alignment explanation
Indices: 701751--702002 Score: 341
Period size: 117 Copynumber: 2.2 Consensus size: 117
701741 ACTTTGTTTA
* * *
701751 ATTCCATCACAGAAGGAGGGGAGTCAACATTTCCAATGAATAGTTTATAATGAGAAGAACTCATC
1 ATTCCATCACAGAAGGAGGGGAGTCAAAATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATC
* * *
701816 CGATGAATGAGAAGAAGTTCATAATAAGAAGAACTTGCTTAACCTTGGTTCG
66 CGATGAAGGAGAAGAAGTTCATAATAAGAAGAACTTGCTTAACCTAGCTTCG
* *
701868 ATTCCATCACAGAAGGAGGAGGA-TTAAAATTTCCAAT-AGAGAGTTCATAATGAGAATAACTCA
1 ATTCCATCACAGAAGGAGG-GGAGTCAAAATTTCCAATGA-AGAGTTCATAATGAGAAGAACTCA
* *
701931 TCCGATGAGGGAGAAGAAGTTCATAATAAGAAGAACTTG-TTCATCCTCAGCTT-G
64 TCCGATGAAGGAGAAGAAGTTCATAATAAGAAGAACTTGCTT-AACCT-AGCTTCG
*
701985 ATTCCATCACATAAGGAG
1 ATTCCATCACAGAAGGAG
702003 TTGGAACATC
Statistics
Matches: 120, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
116 3 0.03
117 111 0.93
118 6 0.05
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (117 bp):
ATTCCATCACAGAAGGAGGGGAGTCAAAATTTCCAATGAAGAGTTCATAATGAGAAGAACTCATC
CGATGAAGGAGAAGAAGTTCATAATAAGAAGAACTTGCTTAACCTAGCTTCG
Found at i:702220 original size:40 final size:40
Alignment explanation
Indices: 701987--702222 Score: 177
Period size: 40 Copynumber: 5.8 Consensus size: 40
701977 TCAGCTTGAT
* * *
701987 TCCATCACATAAGGAGTTGGAACATCACCGACCTT-GTCTCA
1 TCCATCACATAAGGAGTTGGATCAGCATC-ACCTTCG-CTCA
* * ** *
702028 TCCATCATATAAGGAGTTGGATCAACATCATTATTTCGCTCG
1 TCCATCACATAAGGAGTTGGATCAGCATCA--CCTTCGCTCA
* **
702070 TCCATCACATAAGGAGTTGGATCAGCATCACTTTCGCTTG
1 TCCATCACATAAGGAGTTGGATCAGCATCACCTTCGCTCA
* * ** * * * ** **
702110 TCTATAACATAAAAAGTTGTATTAGAATCATTTTTACTCA
1 TCCATCACATAAGGAGTTGGATCAGCATCACCTTCGCTCA
* * * *
702150 TCCATCGCATAAGGAGTTGAATCAACATCACCTTGGCTCA
1 TCCATCACATAAGGAGTTGGATCAGCATCACCTTCGCTCA
* *
702190 TCCATCAGATAAGGAGTTAGATCAGCATCACCT
1 TCCATCACATAAGGAGTTGGATCAGCATCACCT
702223 CGGGATAACC
Statistics
Matches: 151, Mismatches: 41, Indels: 7
0.76 0.21 0.04
Matches are distributed among these distances:
40 92 0.61
41 25 0.17
42 33 0.22
43 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (40 bp):
TCCATCACATAAGGAGTTGGATCAGCATCACCTTCGCTCA
Found at i:702352 original size:76 final size:76
Alignment explanation
Indices: 702268--702428 Score: 223
Period size: 76 Copynumber: 2.1 Consensus size: 76
702258 TAAGAGAATA
* * *
702268 AGTTCATAACGAGAATAAATTCTATAATCAGTTCTAACCCATCGAAGAAATAAGTGGATTGACAT
1 AGTTCATAACGAGAATAAATTCTATAATCACTTCTAACCCATCGAAGAAAGAAGTGAATTGACAT
*
702333 CCCCAATAAAG
66 CCCCAACAAAG
* * * * * *
702344 AGTTCATAATGAGAATAACTTGTATAATCACTTCTTACCCATCGTAGAAGGAAGTGAATTGACAT
1 AGTTCATAACGAGAATAAATTCTATAATCACTTCTAACCCATCGAAGAAAGAAGTGAATTGACAT
*
702409 CCCCAGCAAAG
66 CCCCAACAAAG
702420 AGTTCATAA
1 AGTTCATAA
702429 AAAGAAGAAC
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (76 bp):
AGTTCATAACGAGAATAAATTCTATAATCACTTCTAACCCATCGAAGAAAGAAGTGAATTGACAT
CCCCAACAAAG
Found at i:703769 original size:20 final size:20
Alignment explanation
Indices: 703726--703769 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
703716 GCTTTTCTTT
* *
703726 ATTTATATTTTGACCATTTT
1 ATTTACATTTTGACCATTTG
**
703746 ATTTACATTTTGTTCATTTG
1 ATTTACATTTTGACCATTTG
703766 ATTT
1 ATTT
703770 GGATGCACTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.61
Consensus pattern (20 bp):
ATTTACATTTTGACCATTTG
Found at i:704828 original size:2 final size:2
Alignment explanation
Indices: 704821--704855 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
704811 ATGGACTTAA
704821 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
704856 AACATACATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:706999 original size:24 final size:24
Alignment explanation
Indices: 706972--707032 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 24
706962 TTTTTATTTA
706972 TTTTCTTTTTTTCTC-TTTTTCACT
1 TTTTCTTTTTTTCTCATTTTTCA-T
706996 TTTTCCTTTTTTT-TCATTTTTCAT
1 TTTT-CTTTTTTTCTCATTTTTCAT
*
707020 TTTTCATTTTTTC
1 TTTTCTTTTTTTC
707033 ATTTTCATTC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 7 0.21
24 11 0.33
25 15 0.45
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTTCTTTTTTTCTCATTTTTCAT
Found at i:707015 original size:6 final size:7
Alignment explanation
Indices: 707005--707041 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
706995 TTTTTCCTTT
707005 TTTTTCA
1 TTTTTCA
707012 TTTTTCA
1 TTTTTCA
707019 TTTTTCA
1 TTTTTCA
707026 TTTTTTCA
1 -TTTTTCA
707034 -TTTTCA
1 TTTTTCA
707040 TT
1 TT
707042 CATTTTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 6 0.21
7 15 0.54
8 7 0.25
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTTCA
Found at i:707031 original size:32 final size:32
Alignment explanation
Indices: 706987--707054 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
706977 TTTTTTTCTC
* **
706987 TTTTTCACTTTTTCCTTTTTTTTCATTTTTCA
1 TTTTTCACTTTTTCATTTTCATTCATTTTTCA
* *
707019 TTTTTCATTTTTTCATTTTCATTCATTTTTTA
1 TTTTTCACTTTTTCATTTTCATTCATTTTTCA
707051 TTTT
1 TTTT
707055 CTTTCTTTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.74
Consensus pattern (32 bp):
TTTTTCACTTTTTCATTTTCATTCATTTTTCA
Found at i:707053 original size:7 final size:8
Alignment explanation
Indices: 706958--707054 Score: 69
Period size: 8 Copynumber: 11.9 Consensus size: 8
706948 TCTTGAACTC
706958 TCATTTTT
1 TCATTTTT
706966 T-ATTTATTT
1 TCA-TT-TTT
*
706975 TCTTTTTT
1 TCATTTTT
706983 TC-TCTTTT
1 TCAT-TTTT
706991 TCACTTTTT
1 TCA-TTTTT
* *
707000 CCTTTTTTT
1 TC-ATTTTT
707009 TCA-TTTT
1 TCATTTTT
707016 TCA-TTTT
1 TCATTTTT
707023 TCATTTTT
1 TCATTTTT
707031 TCATTTTCAT
1 TCATTTT--T
707041 TCATTTTT
1 TCATTTTT
707049 T-ATTTT
1 TCATTTT
707055 CTTTCTTTTG
Statistics
Matches: 74, Mismatches: 5, Indels: 21
0.74 0.05 0.21
Matches are distributed among these distances:
7 21 0.28
8 27 0.36
9 17 0.23
10 9 0.12
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.74
Consensus pattern (8 bp):
TCATTTTT
Found at i:707053 original size:17 final size:18
Alignment explanation
Indices: 707022--707055 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
707012 TTTTTCATTT
707022 TTCATTTTTTCATTTTCA
1 TTCATTTTTTCATTTTCA
707040 TTCATTTTTT-ATTTTC
1 TTCATTTTTTCATTTTC
707056 TTTCTTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (18 bp):
TTCATTTTTTCATTTTCA
Found at i:709144 original size:23 final size:23
Alignment explanation
Indices: 709112--709156 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
709102 ACACAACTTC
*
709112 TCGATTGGTGAGTATCTCACCTT
1 TCGATCGGTGAGTATCTCACCTT
709135 TCGATCGGTGAGTATCTCACCT
1 TCGATCGGTGAGTATCTCACCT
709157 CACAATCAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (23 bp):
TCGATCGGTGAGTATCTCACCTT
Found at i:709878 original size:43 final size:46
Alignment explanation
Indices: 709826--709932 Score: 132
Period size: 50 Copynumber: 2.3 Consensus size: 46
709816 ATAACTAATG
709826 AATAAAATAATAACAAACT-AAAT-ATGTTTTAACT-C-TAATTCCT
1 AATAAAATAATAA-AAACTAAAATAATGTTTTAACTACTTAATTCCT
*
709869 AATAAAATAATAATAACTAAAAATAATGTTTTAACTCAACCTTAATTCCT
1 AATAAAATAATAAAAACT-AAAATAATGTTTTAACT--A-CTTAATTCCT
709919 AATAAAATAATAAA
1 AATAAAATAATAAA
709933 TCTAATCCTA
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
42 4 0.07
43 13 0.24
44 4 0.07
45 11 0.20
49 1 0.02
50 21 0.39
ACGTcount: A:0.53, C:0.12, G:0.02, T:0.33
Consensus pattern (46 bp):
AATAAAATAATAAAAACTAAAATAATGTTTTAACTACTTAATTCCT
Found at i:713867 original size:45 final size:47
Alignment explanation
Indices: 713788--713892 Score: 119
Period size: 45 Copynumber: 2.2 Consensus size: 47
713778 ATAACTAATG
713788 AATAAAAT-ATAATAACAAACTAAATATGTCTTAACT-C-TAATTCCT
1 AATAAAATAATAATAACAAAC-AAATATGTCTTAACTACTTAATTCCT
* *
713833 AATAAAATAATAATAACTAA-AAATAATGTTTTAACTCAACCTTAATTCCT
1 AATAAAATAATAATAACAAACAAAT-ATGTCTTAACT--A-CTTAATTCCT
713883 AATAAAATAA
1 AATAAAATAA
713893 AAAATCTAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
44 4 0.08
45 18 0.35
46 10 0.20
49 1 0.02
50 18 0.35
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.32
Consensus pattern (47 bp):
AATAAAATAATAATAACAAACAAATATGTCTTAACTACTTAATTCCT
Found at i:714752 original size:36 final size:38
Alignment explanation
Indices: 714712--714791 Score: 101
Period size: 41 Copynumber: 2.1 Consensus size: 38
714702 CTTTCTATGT
*
714712 CTTGG-CCTT-GAAAATCAGCATCAAATTGTTTCTTTA
1 CTTGGACCTTAGAAAACCAGCATCAAATTGTTTCTTTA
*
714748 CTTGGTCACCTTAAGGAAACCAGCATCAAATTGTTTCTTTA
1 CTTGG--ACCTT-AGAAAACCAGCATCAAATTGTTTCTTTA
714789 CTT
1 CTT
714792 CTTCTTTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
36 5 0.14
39 4 0.11
41 28 0.76
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.38
Consensus pattern (38 bp):
CTTGGACCTTAGAAAACCAGCATCAAATTGTTTCTTTA
Found at i:718918 original size:18 final size:19
Alignment explanation
Indices: 718895--718937 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
718885 TATGAATGAA
*
718895 TAAAATATAATGCG-TAAG
1 TAAAATATAATGCGAAAAG
* *
718913 TAAAATGTAGTGCGAAAAG
1 TAAAATATAATGCGAAAAG
718932 TAAAAT
1 TAAAAT
718938 GCATATACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.51, C:0.05, G:0.19, T:0.26
Consensus pattern (19 bp):
TAAAATATAATGCGAAAAG
Found at i:729731 original size:20 final size:19
Alignment explanation
Indices: 729682--729727 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
729672 ACAACGCTAA
*
729682 TTAATTTCACGTTGCGAAT
1 TTAATTTCGCGTTGCGAAT
*
729701 TTGACTTTCGCGTTGCGAAT
1 TT-AATTTCGCGTTGCGAAT
729721 TTAATTT
1 TTAATTT
729728 TCGCAACACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.22, C:0.15, G:0.17, T:0.46
Consensus pattern (19 bp):
TTAATTTCGCGTTGCGAAT
Found at i:729854 original size:20 final size:20
Alignment explanation
Indices: 729812--729854 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
729802 TAATTAACTA
* *
729812 TTCGCGTTGCGATTTTGACT
1 TTCGCGTTGCGAATTTCACT
* *
729832 TTCGTGTTGCGAATTTCATT
1 TTCGCGTTGCGAATTTCACT
729852 TTC
1 TTC
729855 ACAACGCTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.19, G:0.21, T:0.49
Consensus pattern (20 bp):
TTCGCGTTGCGAATTTCACT
Found at i:729890 original size:76 final size:76
Alignment explanation
Indices: 729764--729942 Score: 295
Period size: 76 Copynumber: 2.4 Consensus size: 76
729754 AATTCGCAAC
*
729764 GCGAATTTCATTTTCGCAACGCTAATTACCTATATAGGTAATTAACTATTCGCGTTGCGATTTTG
1 GCGAATTTCATTTTCGCAACGCTAATTACCTATATAGGTAATTAACTATTCGCGTTGCGAATTTG
*
729829 ACTTTCGTGTT
66 ACTTTCGCGTT
* * * *
729840 GCGAATTTCATTTTCACAACGCTAATTACCTATTTAGGTAATTAACTATTCGTGTTGTGAATTTG
1 GCGAATTTCATTTTCGCAACGCTAATTACCTATATAGGTAATTAACTATTCGCGTTGCGAATTTG
729905 ACTTTCGCGTT
66 ACTTTCGCGTT
*
729916 GCGAATTTCATTTTCGCAACTCTAATT
1 GCGAATTTCATTTTCGCAACGCTAATT
729943 TCATTTTCGC
Statistics
Matches: 95, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 95 1.00
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (76 bp):
GCGAATTTCATTTTCGCAACGCTAATTACCTATATAGGTAATTAACTATTCGCGTTGCGAATTTG
ACTTTCGCGTT
Found at i:729930 original size:20 final size:20
Alignment explanation
Indices: 729888--729932 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
729878 TAATTAACTA
* * *
729888 TTCGTGTTGTGAATTTGACT
1 TTCGCGTTGCGAATTTCACT
*
729908 TTCGCGTTGCGAATTTCATT
1 TTCGCGTTGCGAATTTCACT
729928 TTCGC
1 TTCGC
729933 AACTCTAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.13, C:0.18, G:0.22, T:0.47
Consensus pattern (20 bp):
TTCGCGTTGCGAATTTCACT
Found at i:729942 original size:20 final size:20
Alignment explanation
Indices: 729919--729962 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
729909 TCGCGTTGCG
*
729919 AATTTCATTTTCGCAACTCT
1 AATTTCATTTTCGCAACGCT
729939 AATTTCATTTTCGCAACGCT
1 AATTTCATTTTCGCAACGCT
729959 AATT
1 AATT
729963 ATCTATATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.27, C:0.23, G:0.07, T:0.43
Consensus pattern (20 bp):
AATTTCATTTTCGCAACGCT
Found at i:729945 original size:96 final size:96
Alignment explanation
Indices: 729843--730038 Score: 320
Period size: 96 Copynumber: 2.0 Consensus size: 96
729833 TCGTGTTGCG
* ** *
729843 AATTTCATTTTCACAACGCTAATTACCTATTTAGGTAATTAACTATTCGTGTTGTGAATTTGACT
1 AATTTCATTTTCACAACGCTAATTACCTATATAGGTAATTAACTATTCCCGTTGCGAATTTGACT
*
729908 TTCGCGTTGCGAATTTCATTTTCGCAACTCT
66 TTCGCGTTGCGAATTTCATTTTCGCAACGCT
* * *
729939 AATTTCATTTTCGCAACGCTAATTATCTATATAGGTAATTAACTATTCCCGTTGCGATTTTGACT
1 AATTTCATTTTCACAACGCTAATTACCTATATAGGTAATTAACTATTCCCGTTGCGAATTTGACT
730004 TTCGCGTTGCGAATTTCATTTTCGCAACGCT
66 TTCGCGTTGCGAATTTCATTTTCGCAACGCT
730035 AATT
1 AATT
730039 ACCTATATAG
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 92 1.00
ACGTcount: A:0.25, C:0.19, G:0.14, T:0.42
Consensus pattern (96 bp):
AATTTCATTTTCACAACGCTAATTACCTATATAGGTAATTAACTATTCCCGTTGCGAATTTGACT
TTCGCGTTGCGAATTTCATTTTCGCAACGCT
Found at i:729992 original size:76 final size:76
Alignment explanation
Indices: 729908--730180 Score: 395
Period size: 76 Copynumber: 3.6 Consensus size: 76
729898 GAATTTGACT
* * ** * *
729908 TTCGCGTTGCGAATTTCATTTTCGCAACT-CTAATTTCATTTTCGCAACGCTAATTATCTATATA
1 TTCGCGTTGCGAATTTGACTTTCGC-GTTGCGAATTTCATTTTCGCAACGCTAATTACCTATATA
729972 GGTAATTAACTA
65 GGTAATTAACTA
* *
729984 TTCCCGTTGCGATTTTGACTTTCGCGTTGCGAATTTCATTTTCGCAACGCTAATTACCTATATAG
1 TTCGCGTTGCGAATTTGACTTTCGCGTTGCGAATTTCATTTTCGCAACGCTAATTACCTATATAG
730049 GTAATTAACTA
66 GTAATTAACTA
* *
730060 TTCGCGTTGTGAATTTGACTTTCGCGTTGCGAATTTCATTTTCGCAACTCTAATTACCTATATAG
1 TTCGCGTTGCGAATTTGACTTTCGCGTTGCGAATTTCATTTTCGCAACGCTAATTACCTATATAG
730125 GTAATTAACTA
66 GTAATTAACTA
* * * * *
730136 TTTGCATTGCGAATTTGACTTTTGCGTTGCGAATTTGACTTTCGC
1 TTCGCGTTGCGAATTTGACTTTCGCGTTGCGAATTTCATTTTCGC
730181 GTTGCGATTT
Statistics
Matches: 178, Mismatches: 18, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
75 1 0.01
76 177 0.99
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (76 bp):
TTCGCGTTGCGAATTTGACTTTCGCGTTGCGAATTTCATTTTCGCAACGCTAATTACCTATATAG
GTAATTAACTA
Found at i:730026 original size:20 final size:20
Alignment explanation
Indices: 729988--730028 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
729978 TAACTATTCC
* *
729988 CGTTGCGATTTTGACTTTCG
1 CGTTGCGAATTTCACTTTCG
*
730008 CGTTGCGAATTTCATTTTCG
1 CGTTGCGAATTTCACTTTCG
730028 C
1 C
730029 AACGCTAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.22, G:0.22, T:0.44
Consensus pattern (20 bp):
CGTTGCGAATTTCACTTTCG
Found at i:730042 original size:172 final size:172
Alignment explanation
Indices: 729756--730114 Score: 646
Period size: 172 Copynumber: 2.1 Consensus size: 172
729746 ATGTAGGTAA
* * *
729756 TTCGCAACGCGAATTTCATTTTCGCAACGCTAATTACCTATATAGGTAATTAACTATTCGCGTTG
1 TTCGCAACTCTAATTTCATTTTCGCAACGCTAATTACCTATATAGGTAATTAACTATTCCCGTTG
* *
729821 CGATTTTGACTTTCGTGTTGCGAATTTCATTTTCACAACGCTAATTACCTATTTAGGTAATTAAC
66 CGATTTTGACTTTCGCGTTGCGAATTTCATTTTCACAACGCTAATTACCTATATAGGTAATTAAC
*
729886 TATTCGTGTTGTGAATTTGACTTTCGCGTTGCGAATTTCATT
131 TATTCGCGTTGTGAATTTGACTTTCGCGTTGCGAATTTCATT
*
729928 TTCGCAACTCTAATTTCATTTTCGCAACGCTAATTATCTATATAGGTAATTAACTATTCCCGTTG
1 TTCGCAACTCTAATTTCATTTTCGCAACGCTAATTACCTATATAGGTAATTAACTATTCCCGTTG
*
729993 CGATTTTGACTTTCGCGTTGCGAATTTCATTTTCGCAACGCTAATTACCTATATAGGTAATTAAC
66 CGATTTTGACTTTCGCGTTGCGAATTTCATTTTCACAACGCTAATTACCTATATAGGTAATTAAC
730058 TATTCGCGTTGTGAATTTGACTTTCGCGTTGCGAATTTCATT
131 TATTCGCGTTGTGAATTTGACTTTCGCGTTGCGAATTTCATT
730100 TTCGCAACTCTAATT
1 TTCGCAACTCTAATT
730115 ACCTATATAG
Statistics
Matches: 179, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
172 179 1.00
ACGTcount: A:0.25, C:0.19, G:0.15, T:0.41
Consensus pattern (172 bp):
TTCGCAACTCTAATTTCATTTTCGCAACGCTAATTACCTATATAGGTAATTAACTATTCCCGTTG
CGATTTTGACTTTCGCGTTGCGAATTTCATTTTCACAACGCTAATTACCTATATAGGTAATTAAC
TATTCGCGTTGTGAATTTGACTTTCGCGTTGCGAATTTCATT
Found at i:730102 original size:20 final size:20
Alignment explanation
Indices: 730060--730104 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
730050 TAATTAACTA
* *
730060 TTCGCGTTGTGAATTTGACT
1 TTCGCGTTGCGAATTTCACT
*
730080 TTCGCGTTGCGAATTTCATT
1 TTCGCGTTGCGAATTTCACT
730100 TTCGC
1 TTCGC
730105 AACTCTAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.13, C:0.20, G:0.22, T:0.44
Consensus pattern (20 bp):
TTCGCGTTGCGAATTTCACT
Found at i:730159 original size:20 final size:20
Alignment explanation
Indices: 730136--730192 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
730126 TAATTAACTA
*
730136 TTTGCATTGCGAATTTGACT
1 TTTGCGTTGCGAATTTGACT
730156 TTTGCGTTGCGAATTTGACT
1 TTTGCGTTGCGAATTTGACT
* *
730176 TTCGCGTTGCGATTTTG
1 TTTGCGTTGCGAATTTG
730193 GAACCTGTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.14, C:0.16, G:0.25, T:0.46
Consensus pattern (20 bp):
TTTGCGTTGCGAATTTGACT
Found at i:730166 original size:172 final size:171
Alignment explanation
Indices: 729778--730187 Score: 547
Period size: 172 Copynumber: 2.4 Consensus size: 171
729768 ATTTCATTTT
* * * *
729778 CGCAACGCTAATTACCTATATAGGTAATTAACTATTCGCGTTGCGATTTTGACTTTCGTGTTGCG
1 CGCAAC-CTAACTATCTACATAGGTAATTAACTATTCGCGTTGCGATTTTGACTTTCGCGTTGCG
* *
729843 AATTTCATTTTCACAACGCTAATTACCTATTTAGGTAATTAACTATTCGTGTTGTGAATTTGACT
65 AATTTCATTTTCACAACGCTAATTACCTATATAGGTAATTAACTATTCGCGTTGTGAATTTGACT
* * *
729908 TTCGCGTTGCGAATTTCATTTTCGCAACTCTAATTTCATTTT
130 TTCGCGTTGCGAATTTCATTTTCGCAACTCTAATTCCATATA
* * *
729950 CGCAACGCTAATTATCTATATAGGTAATTAACTATTCCCGTTGCGATTTTGACTTTCGCGTTGCG
1 CGCAAC-CTAACTATCTACATAGGTAATTAACTATTCGCGTTGCGATTTTGACTTTCGCGTTGCG
*
730015 AATTTCATTTTCGCAACGCTAATTACCTATATAGGTAATTAACTATTCGCGTTGTGAATTTGACT
65 AATTTCATTTTCACAACGCTAATTACCTATATAGGTAATTAACTATTCGCGTTGTGAATTTGACT
730080 TTCGCGTTGCGAATTTCATTTTCGCAACTCTAATTACCTATATA
130 TTCGCGTTGCGAATTTCATTTTCGCAACTCTAATT-CC-ATATA
* * * * * * * * *
730124 GGTAA-TTAACTATTTGCATTGCG-AATTTGACT-TTTGCGTTGCGAATTTGACTTTCGCGTTGC
1 CGCAACCTAACTATCTACATAG-GTAA-TTAACTATTCGCGTTGCGATTTTGACTTTCGCGTTGC
730186 GA
64 GA
730188 TTTTGGAACC
Statistics
Matches: 213, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
172 200 0.94
173 7 0.03
174 6 0.03
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.40
Consensus pattern (171 bp):
CGCAACCTAACTATCTACATAGGTAATTAACTATTCGCGTTGCGATTTTGACTTTCGCGTTGCGA
ATTTCATTTTCACAACGCTAATTACCTATATAGGTAATTAACTATTCGCGTTGTGAATTTGACTT
TCGCGTTGCGAATTTCATTTTCGCAACTCTAATTCCATATA
Found at i:735827 original size:80 final size:80
Alignment explanation
Indices: 735694--735856 Score: 308
Period size: 80 Copynumber: 2.0 Consensus size: 80
735684 AGTTTTCAAC
*
735694 TTTACCACTGCCTGAATTTGGTGGAACTTTAGAACAATATTGTTTCCAAATTTTGGACTTCAATG
1 TTTACCACTGCCTGAATTTGGTGGAACTTTAGAACAATATTGTTTCCAAATTTTGGACTTCAATA
735759 GATTGCTTGGTGCTA
66 GATTGCTTGGTGCTA
*
735774 TTTACCACTGTCTGAATTTGGTGGAACTTTAGAACAATATTGTTTCCAAATTTTGGACTTCAATA
1 TTTACCACTGCCTGAATTTGGTGGAACTTTAGAACAATATTGTTTCCAAATTTTGGACTTCAATA
735839 GATTGCTTGGTGCTA
66 GATTGCTTGGTGCTA
735854 TTT
1 TTT
735857 TTTTACCCGA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 81 1.00
ACGTcount: A:0.25, C:0.15, G:0.19, T:0.40
Consensus pattern (80 bp):
TTTACCACTGCCTGAATTTGGTGGAACTTTAGAACAATATTGTTTCCAAATTTTGGACTTCAATA
GATTGCTTGGTGCTA
Found at i:739151 original size:20 final size:20
Alignment explanation
Indices: 739126--739200 Score: 64
Period size: 20 Copynumber: 3.7 Consensus size: 20
739116 GCGAAATAAA
739126 AATCGCAATGCGATCTCCAG
1 AATCGCAATGCGATCTCCAG
*
739146 AATCGCAAAT-CAGTTC-CCAG
1 AATCGC-AATGC-GATCTCCAG
* * **
739166 AATCGCAACGCGATTATGAAG
1 AATCGCAATGCGA-TCTCCAG
739187 AATCGCAATGCGAT
1 AATCGCAATGCGAT
739201 AGTACAAATT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
19 3 0.07
20 20 0.47
21 20 0.47
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (20 bp):
AATCGCAATGCGATCTCCAG
Found at i:739254 original size:20 final size:20
Alignment explanation
Indices: 739229--739504 Score: 166
Period size: 20 Copynumber: 13.7 Consensus size: 20
739219 AATTTTCCAG
*
739229 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGAATACGAA
* *
739249 AATCGCAACGCGAACA-TATA
1 AATCGCAACGCGAATACGA-A
* *
739269 AATCGCAACGCG-ATTCTGAC
1 AATCGCAACGCGAATAC-GAA
* * * *
739289 TATCGCAACGAGTATCCGTAA
1 AATCGCAACGCGAATACG-AA
* * *
739310 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGAA
739330 AATCGCAACGAC-AATACGTAA
1 AATCGCAACG-CGAATACG-AA
* * *
739351 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGAATACGAA
* * *
739371 AATCGCAAAGAGAATACGTA
1 AATCGCAACGCGAATACGAA
* *
739391 AATCGCAACGCGTAT-CTATA
1 AATCGCAACGCGAATACGA-A
* *
739411 AATCGCAACGAGAATACGTA
1 AATCGCAACGCGAATACGAA
* * * *
739431 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATACGAA
*
739451 AATCACAACGAC-AATACGTAA
1 AATCGCAACG-CGAATACG-AA
* * * *
739472 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGAATACGAA
739492 AATCGCAACGCGA
1 AATCGCAACGCGA
739505 TTTTTAAAGC
Statistics
Matches: 195, Mismatches: 48, Indels: 26
0.72 0.18 0.10
Matches are distributed among these distances:
19 3 0.02
20 140 0.72
21 52 0.27
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.18
Consensus pattern (20 bp):
AATCGCAACGCGAATACGAA
Found at i:739405 original size:40 final size:41
Alignment explanation
Indices: 739290--739501 Score: 320
Period size: 41 Copynumber: 5.2 Consensus size: 41
739280 GATTCTGACT
* *
739290 ATCGCAACGAGTATCCGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
*
739331 ATCGCAACGACAATACGTAAAATCGCAACGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* **
739372 ATCGCAAAGAGAATACGT-AAATCGCAACGCGTATCTATAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
*
739412 ATCGCAACGAGAATACGT-AAATCGCAATGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
* * *
739452 ATCACAACGACAATACGTAAAATCGCAATGCGTATCCGTAA
1 ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
739493 ATCGCAACG
1 ATCGCAACG
739502 CGATTTTTAA
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
40 72 0.46
41 84 0.54
ACGTcount: A:0.39, C:0.25, G:0.18, T:0.19
Consensus pattern (41 bp):
ATCGCAACGAGAATACGTAAAATCGCAACGCGTATCCGTAA
Found at i:740118 original size:21 final size:20
Alignment explanation
Indices: 740057--740136 Score: 92
Period size: 20 Copynumber: 4.0 Consensus size: 20
740047 TTCTAAACTT
*
740057 AAAATCACAAC-ATGAAAATG
1 AAAATCGCAACGA-GAAAATG
740077 AAAATCGCAAC-ACGAAAATG
1 AAAATCGCAACGA-GAAAATG
**
740097 ACTATCGCAACGAGAGAAATG
1 AAAATCGCAACGAGA-AAATG
740118 AAAATCGCAACGAGAAAAT
1 AAAATCGCAACGAGAAAAT
740137 CGTAACACGA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
20 33 0.63
21 19 0.37
ACGTcount: A:0.54, C:0.17, G:0.16, T:0.12
Consensus pattern (20 bp):
AAAATCGCAACGAGAAAATG
Found at i:740136 original size:14 final size:14
Alignment explanation
Indices: 740117--740181 Score: 58
Period size: 14 Copynumber: 4.3 Consensus size: 14
740107 CGAGAGAAAT
740117 GAAAATCGCAACGA
1 GAAAATCGCAACGA
*
740131 GAAAATCGTAACACGAAA
1 GAAAATCG-CA-ACG--A
740149 TGAAAATCGCAACGA
1 -GAAAATCGCAACGA
* *
740164 GATAATCGCAACGC
1 GAAAATCGCAACGA
740178 GAAA
1 GAAA
740182 CCAAAATCGC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
14 23 0.56
15 2 0.05
16 3 0.07
17 3 0.07
18 2 0.05
19 8 0.20
ACGTcount: A:0.49, C:0.20, G:0.20, T:0.11
Consensus pattern (14 bp):
GAAAATCGCAACGA
Found at i:740154 original size:33 final size:33
Alignment explanation
Indices: 740112--740192 Score: 117
Period size: 33 Copynumber: 2.5 Consensus size: 33
740102 CGCAACGAGA
*
740112 GAAATGAAAATCGCAACGAGAAAATCGTAACAC
1 GAAATGAAAATCGCAACGAGAAAATCGCAACAC
* *
740145 GAAATGAAAATCGCAACGAGATAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAAAATCGCAACAC
**
740178 GAAACCAAAATCGCA
1 GAAATGAAAATCGCA
740193 TTGCGATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.49, C:0.21, G:0.19, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAAAATCGCAACAC
Found at i:740210 original size:19 final size:19
Alignment explanation
Indices: 740188--740238 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
740178 GAAACCAAAA
* *
740188 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTAATT
740207 TCGCGTTGCGATTTTAATT
1 TCGCGTTGCGATTTTAATT
*
740226 TTGCGTTGCGATT
1 TCGCGTTGCGATT
740239 ATCTCGTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.14, C:0.18, G:0.22, T:0.47
Consensus pattern (19 bp):
TCGCGTTGCGATTTTAATT
Found at i:740270 original size:19 final size:19
Alignment explanation
Indices: 740187--740270 Score: 61
Period size: 19 Copynumber: 4.7 Consensus size: 19
740177 CGAAACCAAA
*
740187 ATCGCATTGCGATTTTCAT
1 ATCGCGTTGCGATTTTCAT
* *
740206 TTCGCGTTGCGATTTTAAT
1 ATCGCGTTGCGATTTTCAT
* *
740225 TTTGCGTTGCGA---T--T
1 ATCGCGTTGCGATTTTCAT
* *
740239 ATCTCGTTTCGATTTTCAT
1 ATCGCGTTGCGATTTTCAT
*
740258 ATCGCTTTGCGAT
1 ATCGCGTTGCGAT
740271 AGTCATTCTC
Statistics
Matches: 49, Mismatches: 11, Indels: 10
0.70 0.16 0.14
Matches are distributed among these distances:
14 9 0.18
16 1 0.02
17 1 0.02
19 38 0.78
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.46
Consensus pattern (19 bp):
ATCGCGTTGCGATTTTCAT
Found at i:742076 original size:12 final size:12
Alignment explanation
Indices: 742059--742093 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
742049 GAAGTTAGTA
742059 TTTGTCTTTTGT
1 TTTGTCTTTTGT
742071 TTTGTCTTTTGT
1 TTTGTCTTTTGT
742083 TTTGTCTTTTG
1 TTTGTCTTTTG
742094 GTTGAAAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.00, C:0.09, G:0.17, T:0.74
Consensus pattern (12 bp):
TTTGTCTTTTGT
Found at i:742728 original size:42 final size:41
Alignment explanation
Indices: 742652--742770 Score: 105
Period size: 42 Copynumber: 2.8 Consensus size: 41
742642 GACTCGCCTG
* * * * * *
742652 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCC-CTCCCACCGTTCAAGAGGCCACTA
*
742694 TCATTCCTCGAGAGTCCTCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCC-CTCCCACCGTTCAAGAGGCCACTA
* * *
742736 TCA-TCGTTGAAGAGGTCCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCTCCCACCGTTCAAGAG
742771 CCCGATTCAC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
41 4 0.06
42 56 0.88
43 4 0.06
ACGTcount: A:0.23, C:0.35, G:0.18, T:0.24
Consensus pattern (41 bp):
TCATTCCTCGAGAGTCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:744139 original size:14 final size:14
Alignment explanation
Indices: 744120--744155 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
744110 ATTGTTTAAT
744120 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
744134 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
744148 TGATTTGT
1 TGATTTGT
744156 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:744297 original size:14 final size:14
Alignment explanation
Indices: 744278--744317 Score: 80
Period size: 14 Copynumber: 2.9 Consensus size: 14
744268 ACGCGAAATG
744278 AAAATCGCAACGAC
1 AAAATCGCAACGAC
744292 AAAATCGCAACGAC
1 AAAATCGCAACGAC
744306 AAAATCGCAACG
1 AAAATCGCAACG
744318 CGAAACTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.50, C:0.28, G:0.15, T:0.07
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:744374 original size:33 final size:33
Alignment explanation
Indices: 744332--744512 Score: 200
Period size: 33 Copynumber: 5.3 Consensus size: 33
744322 ACTAAATTCG
* *
744332 CGTTGCGATTTTCATTTCGCTTTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
744365 CGTTGCGATTTTCATTTTGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
* * * *
744398 CATTCCAATTTTCATTTCGCATTGCGATAGTCATTTCCA
1 CGTTGCGATTTTCATTTCGCATTGCGAT--TC---T-CT
* * *
744437 CGTTGCGATTTTCATATTCGCGTTGCGATTTTCA
1 CGTTGCGATTTTCAT-TTCGCATTGCGATTCTCT
744471 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
*
744504 CATTGCGAT
1 CGTTGCGAT
744513 AGTAATTTCC
Statistics
Matches: 124, Mismatches: 17, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
33 77 0.62
34 17 0.14
35 3 0.02
38 2 0.02
39 13 0.10
40 12 0.10
ACGTcount: A:0.15, C:0.24, G:0.17, T:0.44
Consensus pattern (33 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCTCT
Found at i:744476 original size:14 final size:14
Alignment explanation
Indices: 744457--744484 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
744447 TTCATATTCG
744457 CGTTGCGATTTTCA
1 CGTTGCGATTTTCA
744471 CGTTGCGATTTTCA
1 CGTTGCGATTTTCA
744485 TTTCGCATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTTTCA
Found at i:744484 original size:73 final size:66
Alignment explanation
Indices: 744332--744500 Score: 194
Period size: 73 Copynumber: 2.5 Consensus size: 66
744322 ACTAAATTCG
* * *
744332 CGTTGCGATTTTCATTTCGCTTTGCGATTCCCTCGTTGCGATTTTCATTTTGCATTGCGATTCTC
1 CGTTGCGATTTTCATTTCGCATTGCGATTCCCACGTTGCGATTTTCATTTCGCATTGCGATTCTC
*
744397 T
66 A
* * * *
744398 CATTCCAATTTTCATTTCGCATTGCGATAGTCATTTCCACGTTGCGATTTTCATATTCGCGTTGC
1 CGTTGCGATTTTCATTTCGCATTGCGAT--TC----CCACGTTGCGATTTTCAT-TTCGCATTGC
*
744463 GATTTTCA
59 GATTCTCA
744471 CGTTGCGATTTTCATTTCGCATTGCGATTC
1 CGTTGCGATTTTCATTTCGCATTGCGATTC
744501 TCTCATTGCG
Statistics
Matches: 84, Mismatches: 12, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
66 24 0.29
68 2 0.02
71 2 0.02
72 17 0.20
73 39 0.46
ACGTcount: A:0.15, C:0.24, G:0.17, T:0.44
Consensus pattern (66 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCCACGTTGCGATTTTCATTTCGCATTGCGATTCTC
A
Found at i:744487 original size:20 final size:20
Alignment explanation
Indices: 744405--744470 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
744395 TCTCATTCCA
*
744405 ATTTTCA-TTTCGCATTGCG
1 ATTTTCATTTTCGCGTTGCG
** * *
744424 ATAGTCATTTCCACGTTGCG
1 ATTTTCATTTTCGCGTTGCG
*
744444 ATTTTCATATTCGCGTTGCG
1 ATTTTCATTTTCGCGTTGCG
744464 ATTTTCA
1 ATTTTCA
744471 CGTTGCGATT
Statistics
Matches: 36, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
19 5 0.14
20 31 0.86
ACGTcount: A:0.18, C:0.21, G:0.17, T:0.44
Consensus pattern (20 bp):
ATTTTCATTTTCGCGTTGCG
Found at i:744521 original size:106 final size:106
Alignment explanation
Indices: 744332--744539 Score: 292
Period size: 106 Copynumber: 2.0 Consensus size: 106
744322 ACTAAATTCG
* * *
744332 CGTTGCGATTTTCATTTCGCTTTGCGATTCCCTCGTTGCGATTTTCATTTTGCATTGCGATTCTC
1 CGTTGCGATTTTCATTTCGCGTTGCGATTCCCACGTTGCGATTTTCATTTCGCATTGCGATTCTC
** * *
744397 TCATTCCAATTTTCATTT-CGCATTGCGATAGTCATTTCCA
66 TCATTCCAATAGTAATTTCCGCATTGCGATAGACATTTCCA
**
744437 CGTTGCGATTTTCATATTCGCGTTGCGATTTTCACGTTGCGATTTTCATTTCGCATTGCGATTCT
1 CGTTGCGATTTTCAT-TTCGCGTTGCGATTCCCACGTTGCGATTTTCATTTCGCATTGCGATTCT
* * *
744502 CTCATTGCGATAGTAATTTCCGCGTTGCGATAGACATT
65 CTCATTCCAATAGTAATTTCCGCATTGCGATAGACATT
744540 AAGATGATTG
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
105 15 0.17
106 58 0.65
107 16 0.18
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (106 bp):
CGTTGCGATTTTCATTTCGCGTTGCGATTCCCACGTTGCGATTTTCATTTCGCATTGCGATTCTC
TCATTCCAATAGTAATTTCCGCATTGCGATAGACATTTCCA
Found at i:747934 original size:20 final size:20
Alignment explanation
Indices: 747911--747982 Score: 135
Period size: 20 Copynumber: 3.6 Consensus size: 20
747901 GTCAGAATCT
747911 CGTTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
747931 CGTTGCGATTTACGTATTCG
1 CGTTGCGATTTACGTATTCG
*
747951 CGTTGCGATTTACGTAATCG
1 CGTTGCGATTTACGTATTCG
747971 CGTTGCGATTTA
1 CGTTGCGATTTA
747983 GGAAAATCGC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.17, C:0.19, G:0.25, T:0.39
Consensus pattern (20 bp):
CGTTGCGATTTACGTATTCG
Found at i:748008 original size:22 final size:21
Alignment explanation
Indices: 747974--748020 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
747964 GTAATCGCGT
*
747974 TGCG-ATTTAGGAAAATCGCAA
1 TGCGAATTTAGG-AAATCACAA
*
747995 TGCGAATTTGGGAAATCACAA
1 TGCGAATTTAGGAAATCACAA
748016 TGCGA
1 TGCGA
748021 TAGTCAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (21 bp):
TGCGAATTTAGGAAATCACAA
Found at i:757231 original size:14 final size:14
Alignment explanation
Indices: 757212--757238 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
757202 CAATGAATTG
757212 CTTGGTACTATTTT
1 CTTGGTACTATTTT
757226 CTTGGTACTATTT
1 CTTGGTACTATTT
757239 ATCGACAGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (14 bp):
CTTGGTACTATTTT
Found at i:758639 original size:27 final size:27
Alignment explanation
Indices: 758608--758669 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
758598 GAAAGGATTG
* * * *
758608 AAATACCCTTGAACTCTAAAATGACTA
1 AAATACCCTTAAACACTAAAATAACGA
758635 AAATACCCTTAAACACTAAAATAACGA
1 AAATACCCTTAAACACTAAAATAACGA
758662 AAATACCC
1 AAATACCC
758670 CAAGCTTTGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.50, C:0.24, G:0.05, T:0.21
Consensus pattern (27 bp):
AAATACCCTTAAACACTAAAATAACGA
Found at i:759728 original size:39 final size:39
Alignment explanation
Indices: 759685--759805 Score: 120
Period size: 39 Copynumber: 3.1 Consensus size: 39
759675 ACACTATGAC
* * * *
759685 TAGGGTAAGTCCTTATCTCTGGCTCCTTTGCTTTGTGCA
1 TAGGGTAAGTCCTTACCGCAGACTCCTTTGCTTTGTGCA
759724 TAGGGTAAGTCCTTACCGCAGACTCCTTTGCTTTGTGCA
1 TAGGGTAAGTCCTTACCGCAGACTCCTTTGCTTTGTGCA
* * *** * *
759763 -ATTGGTAAGTTCTTACATAAG-CTCATTTGCTTCGTGCA
1 TA-GGGTAAGTCCTTACCGCAGACTCCTTTGCTTTGTGCA
759801 TAGGG
1 TAGGG
759806 GAAAACCTTA
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
38 18 0.26
39 50 0.74
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.37
Consensus pattern (39 bp):
TAGGGTAAGTCCTTACCGCAGACTCCTTTGCTTTGTGCA
Found at i:759832 original size:40 final size:39
Alignment explanation
Indices: 759788--759887 Score: 107
Period size: 40 Copynumber: 2.6 Consensus size: 39
759778 CATAAGCTCA
759788 TTTGCTTCGTGCATAGGGGAAAACCTTATCGCATGC-CCAT
1 TTTGCTTCGTGCATAGGGGAAAA-CTTATCGCATGCTCC-T
* * * * *
759828 TTTGCATCATGCATAGGGGGAAATTTATCGTATGCTCCT
1 TTTGCTTCGTGCATAGGGGAAAACTTATCGCATGCTCCT
*
759867 TTT-CTTTGTGCATA-GGGAAAA
1 TTTGCTTCGTGCATAGGGGAAAA
759888 TTTTCTAGAC
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
37 6 0.12
38 8 0.16
39 14 0.28
40 22 0.44
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (39 bp):
TTTGCTTCGTGCATAGGGGAAAACTTATCGCATGCTCCT
Found at i:768280 original size:32 final size:32
Alignment explanation
Indices: 768238--768345 Score: 110
Period size: 32 Copynumber: 3.4 Consensus size: 32
768228 TAAGGTGACA
* * *
768238 CTTGGGTAGGCTCTAAGGCCCTAAGTTATTTC
1 CTTGGGTAGGCTATAAGGCCCTAAGGTATTCC
* *
768270 CTTGAGTAGGCTATAATGCCCTAAGGTATTCC
1 CTTGGGTAGGCTATAAGGCCCTAAGGTATTCC
* * ** *
768302 CTTGGGTAGGCTTTTAGGACCC-AAGGTACACT
1 CTTGGGTAGGCTATAAGG-CCCTAAGGTATTCC
768334 CTTGGGTAGGCT
1 CTTGGGTAGGCT
768346 CTCAGACCCC
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
32 60 0.95
33 3 0.05
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.31
Consensus pattern (32 bp):
CTTGGGTAGGCTATAAGGCCCTAAGGTATTCC
Found at i:769445 original size:98 final size:97
Alignment explanation
Indices: 769267--769446 Score: 279
Period size: 97 Copynumber: 1.8 Consensus size: 97
769257 CTGTAATAAA
* * * *
769267 TATAACAAAGTATCTTATATGTTATGACTCAATGTATGTAAAAAAGGAATATTGTTAGTATTCAT
1 TATAACAAAGTATCTTATATGTTATGAATCAATATATGCAAAAAAGGAATATTGTCAGTATTCAT
769332 CCCAATTTTGGAAGTTATCATGCGAGTAAAAT
66 CCCAATTTTGGAAGTTATCATGCGAGTAAAAT
* * * *
769364 TATACCAAAGTATCTTATTTGTTATGAATCAATATGTGCAAAAAAGGGAATATTGTCAGTATTCG
1 TATAACAAAGTATCTTATATGTTATGAATCAATATATGCAAAAAA-GGAATATTGTCAGTATTCA
769429 TCCCAATTTTGGAAGTTA
65 TCCCAATTTTGGAAGTTA
769447 CCCCGCACGT
Statistics
Matches: 74, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
97 39 0.53
98 35 0.47
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (97 bp):
TATAACAAAGTATCTTATATGTTATGAATCAATATATGCAAAAAAGGAATATTGTCAGTATTCAT
CCCAATTTTGGAAGTTATCATGCGAGTAAAAT
Found at i:770510 original size:14 final size:14
Alignment explanation
Indices: 770483--770519 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
770473 TGGGCTGGTA
*
770483 TGAACCGAGCTATT
1 TGAACCGAGATATT
*
770497 TGAACTGAGATATT
1 TGAACCGAGATATT
770511 TGAACCGAG
1 TGAACCGAG
770520 CTGAGCCGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27
Consensus pattern (14 bp):
TGAACCGAGATATT
Found at i:772433 original size:30 final size:29
Alignment explanation
Indices: 772394--772474 Score: 71
Period size: 30 Copynumber: 2.9 Consensus size: 29
772384 TTTAAAACTA
*
772394 ATTTCTTATTTATATTTTAATAATATTTAT
1 ATTTATTATTTATATTTTAATAATA-TTAT
* *
772424 ATTTATTATTAATAATTTT-A-GA-ATTAT
1 ATTTATTATTTAT-ATTTTAATAATATTAT
* *
772451 -TTTATTATGTATATTCTAATAATA
1 ATTTATTATTTATATTTTAATAATA
772475 GTTTTTAAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
25 4 0.10
26 11 0.28
27 5 0.12
28 2 0.05
29 1 0.03
30 12 0.30
31 5 0.12
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (29 bp):
ATTTATTATTTATATTTTAATAATATTAT
Found at i:776367 original size:2 final size:2
Alignment explanation
Indices: 776356--776413 Score: 109
Period size: 2 Copynumber: 29.5 Consensus size: 2
776346 AATTATAAAT
776356 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
776397 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
776414 GTTTATTTAA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 54 0.98
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:777493 original size:17 final size:18
Alignment explanation
Indices: 777461--777498 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
777451 AATTTTTTCT
777461 TATTTTATTTATTAAA-A
1 TATTTTATTTATTAAATA
777478 TATTTTA-TTATATAAATA
1 TATTTTATTTAT-TAAATA
777496 TAT
1 TAT
777499 ATACTTTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.21
17 11 0.58
18 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTTTATTTATTAAATA
Found at i:777804 original size:22 final size:20
Alignment explanation
Indices: 777754--777856 Score: 75
Period size: 22 Copynumber: 5.0 Consensus size: 20
777744 TCTTTTTTAA
*
777754 TTTTC-TTTTATTTTGTTTTG
1 TTTTCATTTTATTTT-TTTTT
*
777774 TTTT-GTTTTATTTTTATTTT
1 TTTTCATTTTATTTTT-TTTT
* *
777794 TTATTCATTTTGTTTTGTTTT
1 TT-TTCATTTTATTTTTTTTT
* *
777815 ATTTCTATTTTATTATTTTTGT
1 TTTTC-ATTTTATT-TTTTTTT
*
777837 TTTTCTTTGTTATTTTTTTT
1 TTTTCATT-TTATTTTTTTT
777857 GTTTATTATT
Statistics
Matches: 65, Mismatches: 11, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
19 1 0.02
20 21 0.32
21 21 0.32
22 22 0.34
ACGTcount: A:0.10, C:0.04, G:0.07, T:0.80
Consensus pattern (20 bp):
TTTTCATTTTATTTTTTTTT
Found at i:777807 original size:32 final size:33
Alignment explanation
Indices: 777769--777831 Score: 110
Period size: 32 Copynumber: 1.9 Consensus size: 33
777759 TTTTATTTTG
*
777769 TTTTGTTTTGTTTTATTTTTATTTT-TTATTCA
1 TTTTGTTTTGTTTTATTTCTATTTTATTATTCA
777801 TTTTGTTTTGTTTTATTTCTATTTTATTATT
1 TTTTGTTTTGTTTTATTTCTATTTTATTATT
777832 TTTGTTTTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 24 0.83
33 5 0.17
ACGTcount: A:0.13, C:0.03, G:0.06, T:0.78
Consensus pattern (33 bp):
TTTTGTTTTGTTTTATTTCTATTTTATTATTCA
Found at i:777828 original size:5 final size:5
Alignment explanation
Indices: 777734--777828 Score: 57
Period size: 5 Copynumber: 18.0 Consensus size: 5
777724 TTTTTATCCA
* * * * * *
777734 TTATT TTTTT TCTTTT TTAATT TTCTT TTATT TTGTT TTGTT TTGTT TTATTT
1 TTATT TTATT T-TATT TT-ATT TTATT TTATT TTATT TTATT TTATT TTA-TT
* *
777787 TTATT TT-TT ATTCATT TTGTT TTGTT TTATT TCTATT TTATT
1 TTATT TTATT -TT-ATT TTATT TTATT TTATT T-TATT TTATT
777829 ATTTTTGTTT
Statistics
Matches: 75, Mismatches: 8, Indels: 14
0.77 0.08 0.14
Matches are distributed among these distances:
4 2 0.03
5 50 0.67
6 21 0.28
7 2 0.03
ACGTcount: A:0.12, C:0.04, G:0.05, T:0.79
Consensus pattern (5 bp):
TTATT
Found at i:777857 original size:22 final size:22
Alignment explanation
Indices: 777816--777868 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
777806 TTTTGTTTTA
777816 TTTCTATTTTATTATTTTTGTT
1 TTTCTATTTTATTATTTTTGTT
*
777838 TTTCT-TTGTTATTTTTTTTGTT
1 TTTCTATT-TTATTATTTTTGTT
*
777860 TAT-TATTTT
1 TTTCTATTTT
777869 CATATTTATG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
21 5 0.19
22 22 0.81
ACGTcount: A:0.11, C:0.04, G:0.06, T:0.79
Consensus pattern (22 bp):
TTTCTATTTTATTATTTTTGTT
Found at i:780060 original size:94 final size:94
Alignment explanation
Indices: 779887--780147 Score: 337
Period size: 94 Copynumber: 2.7 Consensus size: 94
779877 ATATTATATA
* * *
779887 TATATATATACAATAAAGCTTGAGATGTCCCTCTAAAGTAATTGGTTGAAAGCCCTGGCTTTATG
1 TATA-ATATACAATAAAGCTTGAGTTGTCCCTCT-AAGAAATTGGTT-AAAGCCCCGGCTTTATG
779952 GATAAGATTCAGCTAGCCTGAT-AAAGGTGAT
63 GATAAGATTCAGCTAGCCTGATAAAAGGTGAT
* *
779983 TATAATATACAATAAAGCTTGAGTTGTCCCTCTAAGCAATTGGTTAAACGCCCCAGCTTTATGGA
1 TATAATATACAATAAAGCTTGAGTTGTCCCTCTAAGAAATTGGTTAAA-GCCCCGGCTTTATGGA
*
780048 TAATATTCAGCTAGCCTGATAAAAGGTGAT
65 TAAGATTCAGCTAGCCTGATAAAAGGTGAT
* * *
780078 TATAATAT-CTATACAATGATATTAAGTTGTCCCTCTAGAGAAATTGGTTAAATGCCCCGGCTTT
1 TATAATATACAATA-AA-G--CTTGAGTTGTCCCTCTA-AGAAATTGGTTAAA-GCCCCGGCTTT
780142 ATGGAT
60 ATGGAT
780148 TCAACTAGCC
Statistics
Matches: 147, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
93 3 0.02
94 48 0.33
95 47 0.32
96 5 0.03
98 15 0.10
99 29 0.20
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (94 bp):
TATAATATACAATAAAGCTTGAGTTGTCCCTCTAAGAAATTGGTTAAAGCCCCGGCTTTATGGAT
AAGATTCAGCTAGCCTGATAAAAGGTGAT
Found at i:781723 original size:124 final size:124
Alignment explanation
Indices: 781017--781690 Score: 868
Period size: 124 Copynumber: 5.4 Consensus size: 124
781007 TTCAGAACAA
* * * * * * *
781017 ATCCAATTCAAGGCTCAACATCACAATGAAAGGGCCATCTACAGTTTCAACTTCACGATGAAGGG
1 ATCCAATTCAAGGCTCAACTTCACAACGAATGGGCCATCCACGGTTTTAACTTCACGACGAAGGG
* * * * * *
781082 AATCGTGCTCACCAACAGCATTCATCTTTAGATTGGATTTAAACTTCAAGATGAAGAAT
66 AATCGTGCTCACCAGCAACATTCATCTTTAGATTGGATTTCAACTTCACGACGAAGGAT
* ** * *
781141 ATCCAATTCAAGGCTCAACTTCACAACGAAGGGGCCATCCATAGTTTTAACTTCACGATGAAAGG
1 ATCCAATTCAAGGCTCAACTTCACAACGAATGGGCCATCCACGGTTTTAACTTCACGACGAAGGG
* * ** * * *
781206 TATTGTGCTCATGAGTAACATTCATCTTTAGATTGTATTT-ACACTTCACGACAAAGGAT
66 AATCGTGCTCACCAGCAACATTCATCTTTAGATTGGATTTCA-ACTTCACGACGAAGGAT
* ** * *
781265 ATCCAATTCAAGGCTTAACTTCACATTGAATGGGCCATCCACGGTTTTAAATTCACGACAAAGGG
1 ATCCAATTCAAGGCTCAACTTCACAACGAATGGGCCATCCACGGTTTTAACTTCACGACGAAGGG
781330 AATCGTGCTCACCAGCAACATTCATCTTTAGATTGGATTTCAACTTCACGACGAAGGAT
66 AATCGTGCTCACCAGCAACATTCATCTTTAGATTGGATTTCAACTTCACGACGAAGGAT
* ** * *
781389 ATCAAATTCAAGGCTCAACTTCACAACGAATGAACCATCCACGGTTTCAACTTCACGATGAAGGG
1 ATCCAATTCAAGGCTCAACTTCACAACGAATGGGCCATCCACGGTTTTAACTTCACGACGAAGGG
* * *
781454 AATCGTGCTCACCAGTAACATTCATCTTTATATTGGATTTCAACTTCATGACGAAGGAT
66 AATCGTGCTCACCAGCAACATTCATCTTTAGATTGGATTTCAACTTCACGACGAAGGAT
* *
781513 ATCCAATTCAAGGCTCAACTTCACAACGAATGGGCCATCCACGGTTTAAACTTCACGACAAAGGG
1 ATCCAATTCAAGGCTCAACTTCACAACGAATGGGCCATCCACGGTTTTAACTTCACGACGAAGGG
* * *
781578 AATCATGC-CTACCAGCAACATTCATCTTCATATTGGATTTCAACTTCACGACGAAGGAT
66 AATCGTGCTC-ACCAGCAACATTCATCTTTAGATTGGATTTCAACTTCACGACGAAGGAT
* * * * *
781637 ATCCAATTCAAGGCACAA-TTGCACAACGAAGGGGCCCTCCATGATTTTAACTTC
1 ATCCAATTCAAGGCTCAACTT-CACAACGAATGGGCCATCCACGGTTTTAACTTC
781691 GTAACGAAGG
Statistics
Matches: 481, Mismatches: 65, Indels: 8
0.87 0.12 0.01
Matches are distributed among these distances:
123 4 0.01
124 476 0.99
125 1 0.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (124 bp):
ATCCAATTCAAGGCTCAACTTCACAACGAATGGGCCATCCACGGTTTTAACTTCACGACGAAGGG
AATCGTGCTCACCAGCAACATTCATCTTTAGATTGGATTTCAACTTCACGACGAAGGAT
Found at i:781851 original size:84 final size:84
Alignment explanation
Indices: 781746--782106 Score: 463
Period size: 84 Copynumber: 4.3 Consensus size: 84
781736 AAGGTCTATT
* * * *
781746 TGCCAACAAAACACCTTCGAGTTTGACTACGCTCAGCTCCATGGCACATCATTTGCAGTATAACT
1 TGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACT
*
781811 CAAGGCTAGAAGAGTTATC
66 CAAGGCTAGAAGGGTTATC
* * * *
781830 TGCCAACAAAATACCTTCGAGTTCGACTACGCTCAGCTCCAAGGTACATCATTTGCAACATAGCT
1 TGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACT
* * *
781895 CAAGGCAAGAAGGGCTATT
66 CAAGGCTAGAAGGGTTATC
* * * * *
781914 TGCCAACAAAAGACCTTTGAGTTCGACTGCGGTCAGCTCCAAGGCACAACATTTGCAGCATAGCT
1 TGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACT
* *
781979 GAAGGCGAGAAGGGTTATC
66 CAAGGCTAGAAGGGTTATC
* * * * * * *
781998 TGCCAACAGAAGACATTCGAGATCGATTACACTCAGCTCAAAAGCACATCATTTGCAGCATAACT
1 TGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACT
782063 CAAGGCTAGAAGGGTTATC
66 CAAGGCTAGAAGGGTTATC
* *
782082 TGTCAATAAAA-ACCTTCGAGTTCGA
1 TGCCAACAAAAGACCTTCGAGTTCGA
782107 TTCCATTCAG
Statistics
Matches: 236, Mismatches: 41, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
83 12 0.05
84 224 0.95
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (84 bp):
TGCCAACAAAAGACCTTCGAGTTCGACTACGCTCAGCTCCAAGGCACATCATTTGCAGCATAACT
CAAGGCTAGAAGGGTTATC
Found at i:782652 original size:2 final size:2
Alignment explanation
Indices: 782641--782705 Score: 54
Period size: 2 Copynumber: 35.5 Consensus size: 2
782631 CCGATTAAAT
782641 TA TA -A TA TA TA TA TA T- TA -A TA T- TA TA TCA TA TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA
* *
782679 T- TA TA AA CA -A TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
782706 TTATTTACAT
Statistics
Matches: 53, Mismatches: 2, Indels: 16
0.75 0.03 0.23
Matches are distributed among these distances:
1 7 0.13
2 44 0.83
3 2 0.04
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (2 bp):
TA
Found at i:782677 original size:17 final size:16
Alignment explanation
Indices: 782641--782704 Score: 66
Period size: 14 Copynumber: 4.2 Consensus size: 16
782631 CCGATTAAAT
782641 TATAATA-TATATATA
1 TATAATATTATATATA
782656 T-TAATATTATATCATA
1 TATAATATTATAT-ATA
* *
782672 TATAATATTATAAACA
1 TATAATATTATATATA
782688 -AT-ATA-TATATATA
1 TATAATATTATATATA
782701 TATA
1 TATA
782705 TTTATTTACA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
13 6 0.15
14 10 0.25
15 8 0.20
16 6 0.15
17 10 0.25
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATAATATTATATATA
Found at i:784022 original size:2 final size:2
Alignment explanation
Indices: 784015--784041 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
784005 TACCTAACAT
784015 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
784042 TTCTTCGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:784103 original size:19 final size:19
Alignment explanation
Indices: 784079--784160 Score: 62
Period size: 19 Copynumber: 4.3 Consensus size: 19
784069 TTATCCATTA
*
784079 TTTTTTCCTTCTTTTATTT
1 TTTTTTCATTCTTTTATTT
* *
784098 TTTTTTTATTTTTTTA-TT
1 TTTTTTCATTCTTTTATTT
* *
784116 TTTATTCATT-TTTTTTTGT
1 TTTTTTCATTCTTTTATT-T
784135 TTTATTTCTATT-TTATTATTT
1 TTT-TTTC-ATTCTT-TTATTT
784156 TTTTT
1 TTTTT
784161 CTTTGTTATT
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
17 4 0.08
18 11 0.22
19 17 0.34
20 5 0.10
21 9 0.18
22 4 0.08
ACGTcount: A:0.11, C:0.06, G:0.01, T:0.82
Consensus pattern (19 bp):
TTTTTTCATTCTTTTATTT
Found at i:784131 original size:30 final size:29
Alignment explanation
Indices: 784092--784160 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
784082 TTTCCTTCTT
784092 TTATTTTTTTTT-TATTT-TTT-TATTTTTA
1 TTATTTTTTTTTGT-TTTATTTCTA-TTTTA
784120 TTCATTTTTTTTTGTTTTATTTCTATTTTA
1 TT-ATTTTTTTTTGTTTTATTTCTATTTTA
784150 TTATTTTTTTT
1 TTATTTTTTTT
784161 CTTTGTTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
28 2 0.05
29 22 0.59
30 11 0.30
31 2 0.05
ACGTcount: A:0.13, C:0.03, G:0.01, T:0.83
Consensus pattern (29 bp):
TTATTTTTTTTTGTTTTATTTCTATTTTA
Found at i:784154 original size:39 final size:36
Alignment explanation
Indices: 784095--784195 Score: 107
Period size: 39 Copynumber: 2.8 Consensus size: 36
784085 CCTTCTTTTA
* *
784095 TTTTTT-TTTTATTTTTTTATTTTTATTCATTTTTTT
1 TTTTTTATTTTATTTTATTATTTTTATTC-TTTGTTT
* *
784131 TTGTTTTATTTCTATTTTATTATTTTTTTTCTTTGTTA
1 TT-TTTTATTT-TATTTTATTATTTTTATTCTTTGTTT
*
784169 TTTTTTAGTTTT-GTTTATTATTTTTAT
1 TTTTTTA-TTTTATTTTATTATTTTTAT
784196 AATTATGCAT
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
36 15 0.27
37 10 0.18
38 13 0.24
39 17 0.31
ACGTcount: A:0.13, C:0.03, G:0.04, T:0.80
Consensus pattern (36 bp):
TTTTTTATTTTATTTTATTATTTTTATTCTTTGTTT
Found at i:784161 original size:19 final size:19
Alignment explanation
Indices: 784092--784174 Score: 73
Period size: 19 Copynumber: 4.4 Consensus size: 19
784082 TTTCCTTCTT
* *
784092 TTATTTTTTTTTTATTTTT
1 TTATTTTTTTTCTATTTTA
* *
784111 TTATTTTTATTC-ATTTTT
1 TTATTTTTTTTCTATTTTA
*
784129 TTTTGTTTTATTTCTATTTTA
1 TTAT-TTTT-TTTCTATTTTA
784150 TTATTTTTTTTCT-TTGTTA
1 TTATTTTTTTTCTATT-TTA
784169 TT-TTTT
1 TTATTTT
784175 AGTTTTGTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
18 15 0.28
19 24 0.44
20 7 0.13
21 8 0.15
ACGTcount: A:0.12, C:0.04, G:0.02, T:0.82
Consensus pattern (19 bp):
TTATTTTTTTTCTATTTTA
Found at i:784193 original size:33 final size:30
Alignment explanation
Indices: 784092--784193 Score: 93
Period size: 33 Copynumber: 3.3 Consensus size: 30
784082 TTTCCTTCTT
*
784092 TTATTTTTTTT-TTATTTTTT-TATTTTTA
1 TTATTTTTTTTGTTATTTTTTATTTTTTTA
*
784120 TTCATTTTTTTTTGTT-TTATTTCTATTTTATTA
1 TT-A-TTTTTTTTGTTATT-TTT-TATTTTTTTA
*
784153 TTTTTTTTCTTTGTTATTTTTTAGTTTTGTTTA
1 TTATTTTT-TTTGTTATTTTTTA-TTTT-TTTA
784186 TTATTTTT
1 TTATTTTT
784194 ATAATTATGC
Statistics
Matches: 59, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
28 2 0.03
29 1 0.02
30 10 0.17
31 12 0.20
32 14 0.24
33 20 0.34
ACGTcount: A:0.13, C:0.03, G:0.04, T:0.80
Consensus pattern (30 bp):
TTATTTTTTTTGTTATTTTTTATTTTTTTA
Found at i:784569 original size:17 final size:17
Alignment explanation
Indices: 784547--784585 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
784537 TAACAGATAG
784547 TTAGAGAATGTAAAATT
1 TTAGAGAATGTAAAATT
784564 TTAGAGAATGTAAAATT
1 TTAGAGAATGTAAAATT
784581 TTAGA
1 TTAGA
784586 TACTTCGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.18, T:0.36
Consensus pattern (17 bp):
TTAGAGAATGTAAAATT
Found at i:787563 original size:13 final size:13
Alignment explanation
Indices: 787528--787610 Score: 93
Period size: 13 Copynumber: 6.7 Consensus size: 13
787518 CTTGATTCAA
787528 TTTT-TTTTCTT-
1 TTTTCTTTTCTTC
* *
787539 TTTTCATCTCTTC
1 TTTTCTTTTCTTC
*
787552 TTTTCTTTTCTTT
1 TTTTCTTTTCTTC
787565 TTTTCTTTT-TTC
1 TTTTCTTTTCTTC
*
787577 TTTTCTTTTTTTC
1 TTTTCTTTTCTTC
*
787590 TTTTCTTTTTTTC
1 TTTTCTTTTCTTC
787603 -TTTCTTTT
1 TTTTCTTTT
787611 TTTTCTTATG
Statistics
Matches: 63, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
11 4 0.06
12 24 0.38
13 35 0.56
ACGTcount: A:0.01, C:0.17, G:0.00, T:0.82
Consensus pattern (13 bp):
TTTTCTTTTCTTC
Found at i:787565 original size:25 final size:22
Alignment explanation
Indices: 787528--787617 Score: 82
Period size: 25 Copynumber: 4.0 Consensus size: 22
787518 CTTGATTCAA
787528 TTTT-TTTTCTTTTTTCATCTCTT
1 TTTTCTTTTCTTTTTTC-T-TCTT
787551 CTTTTCTTTTC-TTTTT-TTCTT
1 -TTTTCTTTTCTTTTTTCTTCTT
787572 TTTTCTTTTCTTTTTTTCTTTTCTT
1 TTTTCTTTTC-TTTTTTC--TTCTT
787597 TTTT-TCTTTCTTTTTT-TTCTT
1 TTTTCT-TTTCTTTTTTCTTCTT
787618 ATGGATGAGT
Statistics
Matches: 59, Mismatches: 0, Indels: 17
0.78 0.00 0.22
Matches are distributed among these distances:
20 10 0.17
21 9 0.15
22 6 0.10
24 16 0.27
25 18 0.31
ACGTcount: A:0.01, C:0.17, G:0.00, T:0.82
Consensus pattern (22 bp):
TTTTCTTTTCTTTTTTCTTCTT
Found at i:787566 original size:33 final size:33
Alignment explanation
Indices: 787529--787605 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 33
787519 TTGATTCAAT
787529 TTTTTTTCTTTTTTCATCTCTTCTTTTCTTTTC
1 TTTTTTTCTTTTTTCATCTCTTCTTTTCTTTTC
* * *
787562 TTTTTTTCTTTTTTCTTTTCTTTTTTTCTTTTC
1 TTTTTTTCTTTTTTCATCTCTTCTTTTCTTTTC
787595 TTTTTTTCTTT
1 TTTTTTTCTTT
787606 CTTTTTTTTC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.01, C:0.17, G:0.00, T:0.82
Consensus pattern (33 bp):
TTTTTTTCTTTTTTCATCTCTTCTTTTCTTTTC
Found at i:796705 original size:2 final size:2
Alignment explanation
Indices: 796698--796724 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
796688 TTAACCGAAA
796698 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
796725 CTTAGCATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:798268 original size:14 final size:16
Alignment explanation
Indices: 798235--798272 Score: 53
Period size: 14 Copynumber: 2.5 Consensus size: 16
798225 ATTTCATTAA
798235 TATTATTAATAATAAT
1 TATTATTAATAATAAT
*
798251 TATTATTTA-AAT-AT
1 TATTATTAATAATAAT
798265 TATTATTA
1 TATTATTA
798273 TATTATTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 9 0.45
15 3 0.15
16 8 0.40
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTATTAATAATAAT
Found at i:802695 original size:3 final size:3
Alignment explanation
Indices: 802654--802726 Score: 58
Period size: 3 Copynumber: 23.7 Consensus size: 3
802644 GGATAAAAAA
* * * *
802654 TAT TAT AAT TAT TAA TAT TAA TAT TAA TAT TGA- TAT TAT TAT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TA-T
* *
802700 TAT TAT TAA TAT TAAT TAG TAT TAT TA
1 TAT TAT TAT TAT T-AT TAT TAT TAT TA
802727 CACTGTTTTG
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
2 1 0.02
3 46 0.85
4 7 0.13
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (3 bp):
TAT
Found at i:802723 original size:6 final size:6
Alignment explanation
Indices: 802663--802715 Score: 65
Period size: 6 Copynumber: 9.2 Consensus size: 6
802653 ATATTATAAT
* * *
802663 TATTAA TATTAA TATTAA TATTGA TATTAT TATT-A T-TTAT TATTAA
1 TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA
802709 TATTAA T
1 TATTAA T
802716 TAGTATTATT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
4 2 0.05
5 2 0.05
6 35 0.90
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (6 bp):
TATTAA
Found at i:802726 original size:13 final size:13
Alignment explanation
Indices: 802654--802726 Score: 69
Period size: 13 Copynumber: 5.6 Consensus size: 13
802644 GGATAAAAAA
802654 TATTA-TAATTAT
1 TATTATTAATTAT
*
802666 TAATATTAA-TAT
1 TATTATTAATTAT
*
802678 TAATATTGATATTAT
1 TATTATT-A-ATTAT
*
802693 TATTATTTATTAT
1 TATTATTAATTAT
* *
802706 TAATATTAATTAG
1 TATTATTAATTAT
802719 TATTATTA
1 TATTATTA
802727 CACTGTTTTG
Statistics
Matches: 50, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
12 14 0.28
13 26 0.52
14 1 0.02
15 9 0.18
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (13 bp):
TATTATTAATTAT
Found at i:809119 original size:17 final size:17
Alignment explanation
Indices: 809093--809132 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
809083 TCATTATGCA
* *
809093 TAATAAAATGCATTATT
1 TAATAGAATGCATCATT
809110 TAATAGAATGCATCATT
1 TAATAGAATGCATCATT
809127 TAATAG
1 TAATAG
809133 CACATCACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (17 bp):
TAATAGAATGCATCATT
Found at i:818217 original size:36 final size:37
Alignment explanation
Indices: 818137--818224 Score: 108
Period size: 36 Copynumber: 2.4 Consensus size: 37
818127 CAATGATAAG
* *
818137 TTCAGGGTTTTCAAACAAGAGCGAGGAGGAGAGAGTT
1 TTCAGGGTATTCAAACAAGAGCGAGGAGCAGAGAGTT
** *
818174 TGGAGGGTATTCGAACAAGAG-GA-GAGACAGAGAGTT
1 TTCAGGGTATTCAAACAAGAGCGAGGAG-CAGAGAGTT
818210 TTCAGGGTATTCAAA
1 TTCAGGGTATTCAAA
818225 TAGAAAAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
35 3 0.07
36 22 0.52
37 17 0.40
ACGTcount: A:0.34, C:0.10, G:0.34, T:0.22
Consensus pattern (37 bp):
TTCAGGGTATTCAAACAAGAGCGAGGAGCAGAGAGTT
Found at i:826642 original size:12 final size:12
Alignment explanation
Indices: 826625--826650 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
826615 GGACACTTCT
826625 TTATTGGGTCCC
1 TTATTGGGTCCC
826637 TTATTGGGTCCC
1 TTATTGGGTCCC
826649 TT
1 TT
826651 GACTATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.23, G:0.23, T:0.46
Consensus pattern (12 bp):
TTATTGGGTCCC
Found at i:829197 original size:14 final size:14
Alignment explanation
Indices: 829178--829206 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
829168 TTGTTTCATC
829178 TTTTAAAATTATTT
1 TTTTAAAATTATTT
829192 TTTTAAAATTATTT
1 TTTTAAAATTATTT
829206 T
1 T
829207 AAAATGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTAAAATTATTT
Found at i:829220 original size:14 final size:13
Alignment explanation
Indices: 829178--829221 Score: 56
Period size: 14 Copynumber: 3.4 Consensus size: 13
829168 TTGTTTCATC
829178 TTTTAAAATTATTT
1 TTTTAAAATTA-TT
829192 TTTTAAAATTA--
1 TTTTAAAATTATT
829203 TTTTAAAATGTATT
1 TTTTAAAAT-TATT
829217 TTTTA
1 TTTTA
829222 GGTATTCGGC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 9 0.33
12 2 0.07
14 16 0.59
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (13 bp):
TTTTAAAATTATT
Found at i:835444 original size:16 final size:15
Alignment explanation
Indices: 835425--835532 Score: 60
Period size: 15 Copynumber: 6.9 Consensus size: 15
835415 GATAAAAAGG
835425 AGAGAGAATAAAAAAA
1 AGAGAGAA-AAAAAAA
*
835441 AGAG-GAAAAGAGAAA
1 AGAGAGAAAA-AAAAA
* * *
835456 ATATAGAAAAAGAAA
1 AGAGAGAAAAAAAAA
*
835471 AGGGA-AAATATATAAAA
1 AGAGAGAAA-A-A-AAAA
*
835488 AGA-AGAAGAAGAAAA
1 AGAGAGAA-AAAAAAA
835503 AGAGAGAAAAAGAAAA
1 AGAGAGAAAAA-AAAA
*
835519 AAATGAGAAAAAAA
1 AGA-GAGAAAAAAA
835533 TAAATAAAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 20
0.70 0.11 0.20
Matches are distributed among these distances:
14 5 0.07
15 26 0.37
16 23 0.32
17 16 0.23
18 1 0.01
ACGTcount: A:0.72, C:0.00, G:0.21, T:0.06
Consensus pattern (15 bp):
AGAGAGAAAAAAAAA
Found at i:835470 original size:22 final size:22
Alignment explanation
Indices: 835445--835518 Score: 85
Period size: 22 Copynumber: 3.2 Consensus size: 22
835435 AAAAAAAGAG
835445 GAAAAGAGAAAATATAGAAAAA
1 GAAAAGAGAAAATATAGAAAAA
* *
835467 GAAAAGGGAAAATATATAAAAA
1 GAAAAGAGAAAATATAGAAAAA
* *
835489 GAAGAAGAAGAAAAAGAGAGAAAAA
1 GAA-AAG-AG-AAAATATAGAAAAA
835514 GAAAA
1 GAAAA
835519 AAATGAGAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
22 23 0.53
23 3 0.07
24 3 0.07
25 14 0.33
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.07
Consensus pattern (22 bp):
GAAAAGAGAAAATATAGAAAAA
Found at i:835515 original size:19 final size:19
Alignment explanation
Indices: 835488--835542 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
835478 ATATATAAAA
*
835488 AGAAGAAGAAGAAAAA-GAG
1 AGAAAAAGAA-AAAAATGAG
835507 AGAAAAAGAAAAAAATGAG
1 AGAAAAAGAAAAAAATGAG
* *
835526 AAAAAAATAAATAAAAT
1 AGAAAAAGAAA-AAAAT
835543 ATTTCAAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.16
19 21 0.68
20 5 0.16
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.07
Consensus pattern (19 bp):
AGAAAAAGAAAAAAATGAG
Found at i:835526 original size:17 final size:16
Alignment explanation
Indices: 835435--835530 Score: 63
Period size: 17 Copynumber: 5.9 Consensus size: 16
835425 AGAGAGAATA
*
835435 AAAAAAAGAGGAAAAG
1 AAAAAAAGAGAAAAAG
* *
835451 AGAAAATATAGAAAAAG
1 A-AAAAAAGAGAAAAAG
* *
835468 ---AAAAGGGAAAATAT
1 AAAAAAAGAGAAAA-AG
* *
835482 ATAAAAAGAAGAAGAAG
1 AAAAAAAG-AGAAAAAG
*
835499 AAAAAGAGAGAAAAAG
1 AAAAAAAGAGAAAAAG
835515 AAAAAAATGAGAAAAA
1 AAAAAAA-GAGAAAAA
835531 AATAAATAAA
Statistics
Matches: 59, Mismatches: 14, Indels: 13
0.69 0.16 0.15
Matches are distributed among these distances:
13 8 0.14
14 1 0.02
16 14 0.24
17 32 0.54
18 4 0.07
ACGTcount: A:0.73, C:0.00, G:0.21, T:0.06
Consensus pattern (16 bp):
AAAAAAAGAGAAAAAG
Found at i:837508 original size:42 final size:40
Alignment explanation
Indices: 837363--838134 Score: 532
Period size: 38 Copynumber: 19.2 Consensus size: 40
837353 CCTATAAACT
* *
837363 TCAATC-TT-TGTTATTCTTGATTTCCTCATGAAGAGAAG
1 TCAATCTTTATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * ** * *
837401 TCAAT-ATT-TGTTATTCTTAACTTAATCGTGAAGAAAAA
1 TCAATCTTTATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * *
837439 TCAATC-TT-TGTTATTCTTTACTCCCTCGTGAAGAGGAG
1 TCAATCTTTATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* *
837477 TCAATATTTCAATGTTATTCTTGACTTCCTCGTGAAGAGAGG
1 TCAATCTTT--ATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * * *
837519 TTAATC-TT-TGTTATTCTTAACTTCCT-TTGAAGAAAAG
1 TCAATCTTTATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * *
837556 TCGATCTTTA--TTATTATTGACTTCCTCGTGAAGAGAGG
1 TCAATCTTTATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * *
837594 TCAATC-TT-TGTTATTCTTCACTTCCTCATGAAGAGAAA
1 TCAATCTTTATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* *
837632 TCAATC-TT-TGTTATTCTTGACTCCCTCGTGAAGAGGAG
1 TCAATCTTTATGTTATTCTTGACTTCCTCGTGAAGAGAAG
*
837670 TCATTCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGAAG
1 TCAATCTTT--ATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * * ** *
837712 TTAATCTTTCGGTATTACCTTTCTTGACACCCTCGTGAAGAGGAG
1 TCAATCTTT--ATGTTA---TTCTTGACTTCCTCGTGAAGAGAAG
* *
837757 TCATTCTTTTAATGTTATTCTCGACTTCCTCGTGAAGAGAAG
1 TCAATC-TTT-ATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * *
837799 TAAAT-TTT-TGTTATTCTTGACTCCCTCGTAAAGA-AGAG
1 TCAATCTTTATGTTATTCTTGACTTCCTCGTGAAGAGA-AG
* * *
837837 TCAATCTTTCAATATTATTCTTGACTTCCTCGTGAAGTGGAG
1 TCAATCTTT--ATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * * *
837879 TCAATTTTTCAATGTTATTATTGACTTCCCCATGAAGAGAAG
1 TCAATCTTT--ATGTTATTCTTGACTTCCTCGTGAAGAGAAG
** * * *
837921 TTGATCTTT-T-TTATTCTTAACTTCCTCATGAAGACAAG
1 TCAATCTTTATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* *
837959 TTAATC-TT-TGTTATTCTTGACTCCCTCGTGAAGATG-AG
1 TCAATCTTTATGTTATTCTTGACTTCCTCGTGAAGA-GAAG
* * * * * *
837997 TCAATATTTCAATGTTATTTTTGAATTTCTCATGAAGAGAAT
1 TCAATCTTT--ATGTTATTCTTGACTTCCTCGTGAAGAGAAG
* * *
838039 TCAATCTTTCAGTGATGTCATTCTTTACTTTCTCGTGAAG-G-GG
1 TCAATCTTT-A-TG-T-T-ATTCTTGACTTCCTCGTGAAGAGAAG
* * * * *
838082 TCAACCTTTATTGTTGTCATTATCGAATTTCTCGTGAAGAGAAG
1 TCAATCTTTA-TG-T-T-ATTCTTGACTTCCTCGTGAAGAGAAG
838126 TCAATCTTT
1 TCAATCTTT
838135 CAGTGTTGTG
Statistics
Matches: 578, Mismatches: 118, Indels: 70
0.75 0.15 0.09
Matches are distributed among these distances:
37 32 0.06
38 243 0.42
39 10 0.02
40 3 0.01
41 4 0.01
42 215 0.37
43 10 0.02
44 11 0.02
45 47 0.08
46 3 0.01
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (40 bp):
TCAATCTTTATGTTATTCTTGACTTCCTCGTGAAGAGAAG
Found at i:837532 original size:80 final size:77
Alignment explanation
Indices: 837363--838001 Score: 490
Period size: 80 Copynumber: 8.1 Consensus size: 77
837353 CCTATAAACT
* * * ***
837363 TCAATCTTTGTTATTCTTGATTTCCTCATGAAGAGAAGTCAATA-TTTGTTATTCTTAACTTAAT
1 TCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATATTTTGTTATTCTTGACTCCCT
* **
837427 CGTGAAGAAAAA
66 CGTGAAGAGAGG
* * * *
837439 TCAATCTTTGTTATTCTTTACTCCCTCGTGAAGAGGAGTCAATATTTCAATGTTATTCTTGACTT
1 TCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATATTT---TGTTATTCTTGACTC
837504 CCTCGTGAAGAGAGG
63 CCTCGTGAAGAGAGG
* * * * * * * * *
837519 TTAATCTTTGTTATTCTTAACTTCCT-TTGAAGAAAAGTCGAT-CTTTATTATTATTGACTTCCT
1 TCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATATTTTGTTATTCTTGACTCCCT
837582 CGTGAAGAGAGG
66 CGTGAAGAGAGG
* * * *
837594 TCAATCTTTGTTATTCTTCACTTCCTCATGAAGAGAAATCAAT-CTTTGTTATTCTTGACTCCCT
1 TCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATATTTTGTTATTCTTGACTCCCT
837658 CGTGAAGAG-GAG
66 CGTGAAGAGAG-G
* * * *
837670 TCATTCTTTCAATGTTATTCTTGACTTCCTCGTGAAGAGAAGTTAATCTTTCGGTATTACCTTTC
1 TCAATC-TT---TGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATATTT---TGTTA---TTC
*
837735 TTGACACCCTCGTGAAGAG-GAG
56 TTGACTCCCTCGTGAAGAGAG-G
* * *
837757 TCATTCTTTTAATGTTATTCTCGACTTCCTCGTGAAGAGAAGTAAAT-TTTTGTTATTCTTGACT
1 TCAATC--TT--TGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATATTTTGTTATTCTTGACT
*
837821 CCCTCGTAAAGA-AGAG
62 CCCTCGTGAAGAGAG-G
* * * * *
837837 TCAATCTTTCAATATTATTCTTGACTTCCTCGTGAAGTGGAGTCAATTTTTCAATGTTATTATTG
1 TCAATC-TT---TGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATATTT---TGTTATTCTTG
* *
837902 ACTTCCC-CATGAAGAGAAG
59 AC-TCCCTCGTGAAGAGAGG
** * * * * * *
837921 TTGATCTTTTTTATTCTTAACTTCCTCATGAAGACAAGTTAAT-CTTTGTTATTCTTGACTCCCT
1 TCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATATTTTGTTATTCTTGACTCCCT
837985 CGTGAAGATGA-G
66 CGTGAAGA-GAGG
837997 TCAAT
1 TCAAT
838002 ATTTCAATGT
Statistics
Matches: 468, Mismatches: 67, Indels: 56
0.79 0.11 0.09
Matches are distributed among these distances:
75 57 0.12
76 107 0.23
77 6 0.01
78 2 0.00
79 17 0.04
80 165 0.35
81 5 0.01
83 6 0.01
84 27 0.06
85 5 0.01
86 3 0.01
87 65 0.14
88 3 0.01
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (77 bp):
TCAATCTTTGTTATTCTTGACTTCCTCGTGAAGAGAAGTCAATATTTTGTTATTCTTGACTCCCT
CGTGAAGAGAGG
Found at i:837751 original size:45 final size:42
Alignment explanation
Indices: 837449--838049 Score: 366
Period size: 42 Copynumber: 14.9 Consensus size: 42
837439 TCAATCTTTG
* * * *
837449 TTATTCTTTACTCCCTCGTGAAGAGGAGTCAATATTTCAATG
1 TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
* * * *
837491 TTATTCTTGACTTCCTCGTGAAGAGAGGTTAATC-TT---TG
1 TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
* * * * *
837529 TTATTCTTAACTTCCT-TTGAAGAAAAGTCGATC-TT---TA
1 TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
* * * *
837566 TTATTATTGACTTCCTCGTGAAGAGAGGTCAATC-TT---TG
1 TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
* * * * *
837604 TTATTCTTCACTTCCTCATGAAGAGAAATCAATC-TT---TG
1 TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
* * *
837642 TTATTCTTGACTCCCTCGTGAAGAGGAGTCATTCTTTCAATG
1 TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
* * **
837684 TTATTCTTGACTTCCTCGTGAAGAGAAGTTAATCTTTCGGTA
1 TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
* * * * *
837726 TTACCTTTCTTGACACCCTCGTGAAGAGGAGTCATTCTTTTAATG
1 TTA---TTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
* * * *
837771 TTATTCTCGACTTCCTCGTGAAGAGAAGTAAAT-TTT---TG
1 TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
*
837809 TTATTCTTGACTCCCTCGTAAAGA-AGAGTCAATCTTTCAATA
1 TTATTCTTGACTCCCTCGTGAAGAGA-AGTCAATCTTTCAATA
* * * * *
837851 TTATTCTTGACTTCCTCGTGAAGTGGAGTCAATTTTTCAATG
1 TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
* * **
837893 TTATTATTGACTTCCC-CATGAAGAGAAGTTGATCTTT---T-
1 TTATTCTTGAC-TCCCTCGTGAAGAGAAGTCAATCTTTCAATA
* * * * * *
837931 TTATTCTTAACTTCCTCATGAAGACAAGTTAATC-TT---TG
1 TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
* *
837969 TTATTCTTGACTCCCTCGTGAAGATG-AGTCAATATTTCAATG
1 TTATTCTTGACTCCCTCGTGAAGA-GAAGTCAATCTTTCAATA
* * ** * *
838011 TTATTTTTGAATTTCTCATGAAGAGAATTCAATCTTTCA
1 TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCA
838050 GTGATGTCAT
Statistics
Matches: 446, Mismatches: 90, Indels: 46
0.77 0.15 0.08
Matches are distributed among these distances:
37 36 0.08
38 175 0.39
39 8 0.02
41 6 0.01
42 185 0.41
43 3 0.01
45 33 0.07
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (42 bp):
TTATTCTTGACTCCCTCGTGAAGAGAAGTCAATCTTTCAATA
Found at i:838015 original size:80 final size:78
Alignment explanation
Indices: 837732--838047 Score: 264
Period size: 80 Copynumber: 3.9 Consensus size: 78
837722 GGTATTACCT
* * ** *
837732 TTCTTGACACCCTCGTGAAGAGGAGTCATTCTTTTAATGTTATTCTCGACTTCCTCGTGAAGAGA
1 TTCTTGACTCCCTCGTGAAGA-GAGTCAATC-TTTAATGTTATTCTTAACTTCCTCATGAAGAGA
* *
837797 AGTAAATTTTTGTTA
64 AGTCAATCTTTGTTA
* * * * * *
837812 TTCTTGACTCCCTCGTAAAGAAGAGTCAATCTTTCAATATTATTCTTGACTTCCTCGTGAAGTGG
1 TTCTTGACTCCCTCGTGAAG-AGAGTCAATCTTT-AATGTTATTCTTAACTTCCTCATGAAGAGA
*
837877 AGTCAATTTTTCAATGTTA
64 AGTCAA-TCTT---TGTTA
* * ** *
837896 TTATTGACTTCCC-CATGAAGAGAAGTTGATCTTT--T-TTATTCTTAACTTCCTCATGAAGACA
1 TTCTTGAC-TCCCTCGTGAAGAG-AGTCAATCTTTAATGTTATTCTTAACTTCCTCATGAAGAGA
*
837957 AGTTAATCTTTGTTA
64 AGTCAATCTTTGTTA
* * *
837972 TTCTTGACTCCCTCGTGAAGATGAGTCAATATTTCAATGTTATTTTTGAA-TTTCTCATGAAGAG
1 TTCTTGACTCCCTCGTGAAGA-GAGTCAATCTTT-AATGTTATTCTT-AACTTCCTCATGAAGAG
*
838036 AATTCAATCTTT
63 AAGTCAATCTTT
838048 CAGTGATGTC
Statistics
Matches: 191, Mismatches: 30, Indels: 30
0.76 0.12 0.12
Matches are distributed among these distances:
75 4 0.02
76 27 0.14
77 1 0.01
79 7 0.04
80 112 0.59
81 8 0.04
83 2 0.01
84 26 0.14
85 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.16, T:0.41
Consensus pattern (78 bp):
TTCTTGACTCCCTCGTGAAGAGAGTCAATCTTTAATGTTATTCTTAACTTCCTCATGAAGAGAAG
TCAATCTTTGTTA
Found at i:839120 original size:131 final size:132
Alignment explanation
Indices: 838789--839391 Score: 615
Period size: 134 Copynumber: 4.5 Consensus size: 132
838779 AATGTTTAAT
* * * * * *
838789 TTTCAAATTTGGTCTTTCTGAAAAGAAGTAAAGCAAACCACGTTC-GATTCAATCTTTCCTGAAG
1 TTTCAGATTTGGTCTTCCTGAAAAGAAGTGAAGCAAATCA-ATTCTGATTCAATCTTCCCTGAAG
* * * * * * * *
838853 AGAATTAAAATAGATCAAAG-ATTTCTCGAATCTAATCTCCCCTAAAGAGTAGTGGAGCAGATTT
65 AGCAGTGAAGTAGATCAAAGTA-TTCTCGAGTTTGATCTCCCCTAAAGAGTAGTGGAGCAGA-CT
*
838917 TTTTC
128 TCTTC
* * * * * *
838922 TTTCAGATTTGGTCTTTCTGAAAAGAAGTAAAACAAATCGATTATGATTCAATATTCCCTGAAGA
1 TTTCAGATTTGGTCTTCCTGAAAAGAAGTGAAGCAAATCAATTCTGATTCAATCTTCCCTGAAGA
*
838987 GCAGTGAAGTAGATCAAAGTATTCTCGAGTTTGATATCCCCTAAAGAGTAGTGGAGCAGA-TTCT
66 GCAGTGAAGTAGATCAAAGTATTCTCGAGTTTGATCTCCCCTAAAGAGTAGTGGAGCAGACTTCT
839051 TC
131 TC
* * * * *
839053 TTTCAGATTTGGTCTTCCTGAAGAGCAGTGAAGTAAATCAATTCTGATTCAATCTTTCGTGAAGA
1 TTTCAGATTTGGTCTTCCTGAAAAGAAGTGAAGCAAATCAATTCTGATTCAATCTTCCCTGAAGA
* ** * * *
839118 GCAGTGAGGTCTATCAAAGTTTTCTCAAG-TCGAATCTCCCCTAAAGAGTAGTGGAGCAGACGCT
66 GCAGTGAAGTAGATCAAAGTATTCTCGAGTTTG-ATCTCCCCTAAAGAGTAGTGGAGCAGA--CT
839182 TCTTC
128 TCTTC
* * * * * *
839187 TTTTAGATTTGGTATTCCTGAAGAGAAGGGAAGCAAATCGATTCTGATTCAATCTTCCATGAAGA
1 TTTCAGATTTGGTCTTCCTGAAAAGAAGTGAAGCAAATCAATTCTGATTCAATCTTCCCTGAAGA
** * * * *
839252 ATAGTGAAGTGGATCAAAGTTTTTTCGAGTTTGATCTCCCCTAAAGAGTAGTGGAGCATATTCTT
66 GCAGTGAAGTAGATCAAAGTATTCTCGAGTTTGATCTCCCCTAAAGAGTAGTGGAGCAGA--CTT
*
839317 TTTC
129 CTTC
* * * *
839321 TTTCAGATTTGGTATTCTTGAATAGTAA-TGAAACAAATCAATT-TCGATTCAATCTTCCCTGAA
1 TTTCAGATTTGGTCTTCCTGAAAAG-AAGTGAAGCAAATCAATTCT-GATTCAATCTTCCCTGAA
*
839384 GAACAGTG
64 GAGCAGTG
839392 GAATGAATCA
Statistics
Matches: 398, Mismatches: 63, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
130 2 0.01
131 109 0.27
132 2 0.01
133 105 0.26
134 176 0.44
135 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (132 bp):
TTTCAGATTTGGTCTTCCTGAAAAGAAGTGAAGCAAATCAATTCTGATTCAATCTTCCCTGAAGA
GCAGTGAAGTAGATCAAAGTATTCTCGAGTTTGATCTCCCCTAAAGAGTAGTGGAGCAGACTTCT
TC
Found at i:839296 original size:265 final size:265
Alignment explanation
Indices: 838866--839391 Score: 698
Period size: 265 Copynumber: 2.0 Consensus size: 265
838856 ATTAAAATAG
* ** *
838866 ATCAAAGATTTCTCGAATCTAATCTCCCCTAAAGAGTAGTGGAGCAGATTTTTTTCTTTCAGATT
1 ATCAAAGATTTCTCGAATCGAATCTCCCCTAAAGAGTAGTGGAGCAGAGCTTCTTCTTTCAGATT
* * * * *
838931 TGGTCTTTCTGAAAAGAAGTAAAACAAATCGATTATGATTCAATATTCCCTGAAGAGCAGTGAAG
66 TGGTATTCCTGAAAAGAAGGAAAACAAATCGATTATGATTCAATATTCCATGAAGAACAGTGAAG
838996 TAGATCAAAGTATTCTCGAGTTTGATATCCCCTAAAGAGTAGTGGAGCAGATTC-TTCTTTCAGA
131 TAGATCAAAGTATTCTCGAGTTTGATATCCCCTAAAGAGTAGTGGAGCAGATTCTTTCTTTCAGA
* * ** * * *
839060 TTTGGTCTTCCTGAAGAGCAGTGAAGTAAATCAA-TTCTGATTCAATCTTTCGTGAAGAGCAGTG
196 TTTGGTATTCCTGAAGAGCAATGAAACAAATCAATTTC-GATTCAATCTTCCCTGAAGAACAGTG
839124 AGGTCT
260 AGGTCT
* *
839130 ATCAAAGTTTTCTC-AAGTCGAATCTCCCCTAAAGAGTAGTGGAGCAGACGCTTCTTCTTTTAGA
1 ATCAAAGATTTCTCGAA-TCGAATCTCCCCTAAAGAGTAGTGGAGCAGA-GCTTCTTCTTTCAGA
* * * * * *
839194 TTTGGTATTCCTGAAGAGAAGGGAAGCAAATCGATTCTGATTCAATCTTCCATGAAGAATAGTGA
64 TTTGGTATTCCTGAAAAGAAGGAAAACAAATCGATTATGATTCAATATTCCATGAAGAACAGTGA
* * * * *
839259 AGTGGATCAAAGTTTTTTCGAGTTTGATCTCCCCTAAAGAGTAGTGGAGCATATTCTTTTTCTTT
129 AGTAGATCAAAGTATTCTCGAGTTTGATATCCCCTAAAGAGTAGTGGAGCAGATTC--TTTCTTT
* * *
839324 CAGATTTGGTATTCTTGAATAGTAATGAAACAAATCAATTTCGATTCAATCTTCCCTGAAGAACA
192 CAGATTTGGTATTCCTGAAGAGCAATGAAACAAATCAATTTCGATTCAATCTTCCCTGAAGAACA
839389 GTG
257 GTG
839392 GAATGAATCA
Statistics
Matches: 224, Mismatches: 32, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
263 2 0.01
264 43 0.19
265 116 0.52
268 60 0.27
269 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.33
Consensus pattern (265 bp):
ATCAAAGATTTCTCGAATCGAATCTCCCCTAAAGAGTAGTGGAGCAGAGCTTCTTCTTTCAGATT
TGGTATTCCTGAAAAGAAGGAAAACAAATCGATTATGATTCAATATTCCATGAAGAACAGTGAAG
TAGATCAAAGTATTCTCGAGTTTGATATCCCCTAAAGAGTAGTGGAGCAGATTCTTTCTTTCAGA
TTTGGTATTCCTGAAGAGCAATGAAACAAATCAATTTCGATTCAATCTTCCCTGAAGAACAGTGA
GGTCT
Found at i:849923 original size:41 final size:41
Alignment explanation
Indices: 849856--849937 Score: 112
Period size: 41 Copynumber: 2.0 Consensus size: 41
849846 CACCAACAGT
*
849856 ACTGAACATTGAAACACGAATATACCAAAGCTGAACTGATA
1 ACTGAACATTGAAACACGAATATACCAAAGATGAACTGATA
* * *
849897 ACTGAACATT-AATACATGAATGTACCAATGATGAACTGATA
1 ACTGAACATTGAA-ACACGAATATACCAAAGATGAACTGATA
849938 GGTACTCACT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
40 2 0.06
41 34 0.94
ACGTcount: A:0.45, C:0.17, G:0.15, T:0.23
Consensus pattern (41 bp):
ACTGAACATTGAAACACGAATATACCAAAGATGAACTGATA
Found at i:860462 original size:11 final size:10
Alignment explanation
Indices: 860450--860506 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 10
860440 TTTCCTAAAG
860450 AAAGAAAAAAGA
1 AAAG-AAAAA-A
860462 AGAAGAAAAAA
1 A-AAGAAAAAA
*
860473 AAATGAATAAA
1 AAA-GAAAAAA
860484 AAAGAAATAAA
1 AAAGAAA-AAA
860495 AAAGAAGAAAA
1 AAAGAA-AAAA
860506 A
1 A
860507 TAATAATGAT
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
10 5 0.13
11 24 0.62
12 7 0.18
13 3 0.08
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (10 bp):
AAAGAAAAAA
Found at i:860488 original size:38 final size:37
Alignment explanation
Indices: 860446--860536 Score: 121
Period size: 38 Copynumber: 2.4 Consensus size: 37
860436 TATTTTTCCT
860446 AAAGAAAGAAAAAAGAAGAAGAAAAAAAAATGA-ATAAA
1 AAAGAAAGAAAAAAGAAGAA-AAAAAAAAATGATA-AAA
* * *
860484 AAAGAAATAAAAAAGAAGAAAAATAATAATGATAAAA
1 AAAGAAAGAAAAAAGAAGAAAAAAAAAAATGATAAAA
860521 AAAGAAAAGAAAAAAG
1 AAAG-AAAGAAAAAAG
860537 GAAAAATAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
37 17 0.36
38 30 0.64
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (37 bp):
AAAGAAAGAAAAAAGAAGAAAAAAAAAAATGATAAAA
Found at i:860495 original size:21 final size:21
Alignment explanation
Indices: 860464--860506 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
860454 AAAAAAGAAG
* *
860464 AAGAAAAAAAAATGAATAAAA
1 AAGAAAAAAAAAAGAAGAAAA
*
860485 AAGAAATAAAAAAGAAGAAAA
1 AAGAAAAAAAAAAGAAGAAAA
860506 A
1 A
860507 TAATAATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (21 bp):
AAGAAAAAAAAAAGAAGAAAA
Found at i:860496 original size:37 final size:38
Alignment explanation
Indices: 860446--860549 Score: 108
Period size: 37 Copynumber: 2.7 Consensus size: 38
860436 TATTTTTCCT
860446 AAAGAAAGAAAAAAGAAGAAGAAAAA-AA-AATGA-ATAAA
1 AAAGAAAG-AAAAA-AAGAAGAAAAATAATAATGATA-AAA
*
860484 AAAGAAA-TAAAAAAGAAGAAAAATAATAATGATAAAA
1 AAAGAAAGAAAAAAAGAAGAAAAATAATAATGATAAAA
* *
860521 AAAGAAAAGAAAAAAGGAAAAATAAATAA
1 AAAG-AAAGAAAAAAAGAAGAA-AAATAA
860550 AGGGGTTCAA
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
35 11 0.20
36 6 0.11
37 12 0.21
38 11 0.20
39 10 0.18
40 6 0.11
ACGTcount: A:0.78, C:0.00, G:0.13, T:0.09
Consensus pattern (38 bp):
AAAGAAAGAAAAAAAGAAGAAAAATAATAATGATAAAA
Found at i:871177 original size:18 final size:18
Alignment explanation
Indices: 871154--871189 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
871144 CATTAGAGTC
871154 TTATA-CAATGTTCCTTCT
1 TTATACCAAT-TTCCTTCT
871172 TTATACCAATTTCCTTCT
1 TTATACCAATTTCCTTCT
871190 GAATCCAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.22, C:0.25, G:0.03, T:0.50
Consensus pattern (18 bp):
TTATACCAATTTCCTTCT
Found at i:875083 original size:18 final size:18
Alignment explanation
Indices: 875060--875130 Score: 124
Period size: 18 Copynumber: 3.9 Consensus size: 18
875050 CATATGAATT
*
875060 TGTCCCGAAGGACTACTA
1 TGTCCCGAAGGACCACTA
875078 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
875096 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
875114 TGTCCCAAAGGACCACT
1 TGTCCCGAAGGACCACT
875131 CCTTAAGAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.28, C:0.32, G:0.21, T:0.18
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:883827 original size:23 final size:24
Alignment explanation
Indices: 883801--883847 Score: 87
Period size: 23 Copynumber: 2.0 Consensus size: 24
883791 GAACCGGTCA
883801 ACCTGACCCGACCAGCCT-GTCCG
1 ACCTGACCCGACCAGCCTGGTCCG
883824 ACCTGACCCGACCAGCCTGGTCCG
1 ACCTGACCCGACCAGCCTGGTCCG
883848 GTCCAGTCAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 18 0.78
24 5 0.22
ACGTcount: A:0.17, C:0.47, G:0.23, T:0.13
Consensus pattern (24 bp):
ACCTGACCCGACCAGCCTGGTCCG
Found at i:883877 original size:15 final size:15
Alignment explanation
Indices: 883857--883896 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
883847 GGTCCAGTCA
883857 CCGAGTCAACTCGGT
1 CCGAGTCAACTCGGT
*
883872 CCGAGTCAACTTGGT
1 CCGAGTCAACTCGGT
*
883887 CTGAGTCAAC
1 CCGAGTCAAC
883897 CCGTTGACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (15 bp):
CCGAGTCAACTCGGT
Found at i:890411 original size:20 final size:22
Alignment explanation
Indices: 890386--890434 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 22
890376 AATTCCTTTG
*
890386 TTGCATTTAC-ATTTTTCAT-T
1 TTGCATTTACTATTTTGCATCT
*
890406 TTGCA-TTCCTATTTTGCATCT
1 TTGCATTTACTATTTTGCATCT
890427 TTGCATTT
1 TTGCATTT
890435 GCATGTGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
19 3 0.12
20 13 0.54
21 6 0.25
22 2 0.08
ACGTcount: A:0.16, C:0.18, G:0.08, T:0.57
Consensus pattern (22 bp):
TTGCATTTACTATTTTGCATCT
Found at i:891837 original size:23 final size:23
Alignment explanation
Indices: 891817--891906 Score: 71
Period size: 23 Copynumber: 3.9 Consensus size: 23
891807 ATAAAAAAAT
* *
891817 AAGAGAGAAAGGAAAGCAAAAGA
1 AAGAGAAAAAAGAAAGCAAAAGA
891840 AAGAGAAAAAAGAAA--AGAAAGA
1 AAGAGAAAAAAGAAAGCA-AAAGA
* *
891862 AAGAAAGAAAAAGAAAAAGAAAAAGA
1 AAG--AGAAAAA-AGAAAGCAAAAGA
*
891888 AAAAG-AAAAAGAAAG-AAAA
1 AAGAGAAAAAAGAAAGCAAAA
891907 TCGATCAATT
Statistics
Matches: 56, Mismatches: 5, Indels: 14
0.75 0.07 0.19
Matches are distributed among these distances:
21 5 0.09
22 13 0.23
23 17 0.30
24 9 0.16
25 4 0.07
26 7 0.12
27 1 0.02
ACGTcount: A:0.77, C:0.01, G:0.22, T:0.00
Consensus pattern (23 bp):
AAGAGAAAAAAGAAAGCAAAAGA
Found at i:891850 original size:36 final size:36
Alignment explanation
Indices: 891809--891906 Score: 114
Period size: 36 Copynumber: 2.8 Consensus size: 36
891799 TAAAAAACAT
* * * *
891809 AAAAAA-ATAAGAGAGAAAGGAAAGCAAAAGAAAGAG
1 AAAAAAGAAAAGAAAGAAA-GAAAGAAAAAGAAAAAG
891845 AAAAAAGAAAAGAAAGAAAGAAAGAAAAAGAAAAAG
1 AAAAAAGAAAAGAAAGAAAGAAAGAAAAAGAAAAAG
891881 -AAAAAGAAAA-AGAA-AAAGAAAGAAAA
1 AAAAAAGAAAAGA-AAGAAAGAAAGAAAA
891907 TCGATCAATT
Statistics
Matches: 56, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
34 13 0.23
35 12 0.21
36 21 0.38
37 10 0.18
ACGTcount: A:0.78, C:0.01, G:0.20, T:0.01
Consensus pattern (36 bp):
AAAAAAGAAAAGAAAGAAAGAAAGAAAAAGAAAAAG
Found at i:891857 original size:18 final size:19
Alignment explanation
Indices: 891829--891901 Score: 91
Period size: 18 Copynumber: 4.0 Consensus size: 19
891819 GAGAGAAAGG
* *
891829 AAAGCAAAAGAAAGAGAAA
1 AAAGAAAAAGAAAAAGAAA
891848 AAAG-AAAAG--AAAGAAA
1 AAAGAAAAAGAAAAAGAAA
891864 GAAAGAAAAAGAAAAAG-AA
1 -AAAGAAAAAGAAAAAGAAA
891883 AAAGAAAAAGAAAAAGAAA
1 AAAGAAAAAGAAAAAGAAA
891902 GAAAATCGAT
Statistics
Matches: 48, Mismatches: 1, Indels: 10
0.81 0.02 0.17
Matches are distributed among these distances:
16 6 0.12
17 4 0.08
18 26 0.54
19 8 0.17
20 4 0.08
ACGTcount: A:0.79, C:0.01, G:0.19, T:0.00
Consensus pattern (19 bp):
AAAGAAAAAGAAAAAGAAA
Found at i:891858 original size:12 final size:12
Alignment explanation
Indices: 891834--891906 Score: 75
Period size: 12 Copynumber: 6.2 Consensus size: 12
891824 AAAGGAAAGC
891834 AAAAGAAAGAGAA
1 AAAAGAAA-AGAA
891847 AAAAGAAAAGAA
1 AAAAGAAAAGAA
891859 AGAAAG-AAAG-A
1 A-AAAGAAAAGAA
891870 AAAAGAAAA-AGA
1 AAAAGAAAAGA-A
891882 AAAAGAAAA-AGA
1 AAAAGAAAAGA-A
891894 AAAAG-AAAGAA
1 AAAAGAAAAGAA
891905 AA
1 AA
891907 TCGATCAATT
Statistics
Matches: 55, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
10 4 0.07
11 11 0.20
12 28 0.51
13 12 0.22
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAGAA
Found at i:895105 original size:13 final size:13
Alignment explanation
Indices: 895087--895112 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
895077 AAATGTTGAT
895087 TTTGACTTTGACC
1 TTTGACTTTGACC
895100 TTTGACTTTGACC
1 TTTGACTTTGACC
895113 AAAAGCGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
TTTGACTTTGACC
Found at i:902813 original size:2 final size:2
Alignment explanation
Indices: 902806--902832 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
902796 ATAGACTTAA
902806 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
902833 AACATACATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:904906 original size:18 final size:17
Alignment explanation
Indices: 904865--904897 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
904855 CTCCTTTTAT
904865 TCATTTTCTTTTTTTTC
1 TCATTTTCTTTTTTTTC
904882 TCATTTTCTTTTTTTT
1 TCATTTTCTTTTTTTT
904898 TCTTCTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (17 bp):
TCATTTTCTTTTTTTTC
Found at i:904909 original size:37 final size:37
Alignment explanation
Indices: 904868--904938 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
904858 CTTTTATTCA
* *
904868 TTTTCTTTTTTTTCTCATTTTCTT-TTTT-TTTCTTCTT
1 TTTTCATTTTTAT-TCATTTT-TTATTTTCTTTCTTCTT
904905 TTTTCATTTTTATTCATTTTTTATTTTCTTTCTT
1 TTTTCATTTTTATTCATTTTTTATTTTCTTTCTT
904939 TAGGTAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 2 0.07
36 11 0.37
37 17 0.57
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (37 bp):
TTTTCATTTTTATTCATTTTTTATTTTCTTTCTTCTT
Done.