Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001700.1 Hibiscus syriacus cultivar Beakdansim tig00003398_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2632955
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 8 of 11
Found at i:1501636 original size:4 final size:4
Alignment explanation
Indices: 1501627--1501658 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
1501617 TTATTATTAT
1501627 TTTA TTTA -TT- TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1501659 ATTCGGTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
3 4 0.15
4 22 0.85
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:1501644 original size:14 final size:15
Alignment explanation
Indices: 1501617--1501651 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
1501607 TATATACATA
*
1501617 TTATTATTATTTTAT
1 TTATTTTTATTTTAT
1501632 TTATTTTTA-TTTAT
1 TTATTTTTATTTTAT
1501646 TTATTT
1 TTATTT
1501652 ATTTATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTATTTTTATTTTAT
Found at i:1503147 original size:2 final size:2
Alignment explanation
Indices: 1503140--1503221 Score: 58
Period size: 2 Copynumber: 44.5 Consensus size: 2
1503130 TACTACAATA
*
1503140 AT AT AT AT AC A- AT AT -T AT AT AT AT A- AT AT AT ACT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
1503179 AT A- AT A- AT A- AT ACT AT A- AT ACT AT A- AT AT AT AT AT A- AT
1 AT AT AT AT AT AT AT A-T AT AT AT A-T AT AT AT AT AT AT AT AT AT
1503217 AT AT A
1 AT AT A
1503222 CTACGTAATT
Statistics
Matches: 66, Mismatches: 1, Indels: 26
0.71 0.01 0.28
Matches are distributed among these distances:
1 10 0.15
2 50 0.76
3 6 0.09
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (2 bp):
AT
Found at i:1503152 original size:14 final size:14
Alignment explanation
Indices: 1503133--1503203 Score: 65
Period size: 14 Copynumber: 5.0 Consensus size: 14
1503123 GGACGAATAC
1503133 TACAATAATATATA
1 TACAATAATATATA
*
1503147 TACAATATTATATA
1 TACAATAATATATA
*
1503161 TATAAT-ATATACTA
1 TACAATAATATA-TA
*
1503175 TATAATAATA-ATAA
1 TACAATAATATAT-A
*
1503189 TACTATAATACTATA
1 TACAATAATA-TATA
1503204 ATATATATAT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
13 5 0.11
14 36 0.77
15 4 0.09
16 2 0.04
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (14 bp):
TACAATAATATATA
Found at i:1503161 original size:7 final size:6
Alignment explanation
Indices: 1503140--1503221 Score: 58
Period size: 5 Copynumber: 14.8 Consensus size: 6
1503130 TACTACAATA
*
1503140 ATATAT ATACA- ATAT-T ATATAT ATA-AT ATATACT ATATA- ATA-AT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATA-T ATATAT ATATAT
1503184 A-ATA- ATACTAT A-ATACT ATA-AT ATATAT ATA-AT ATATA
1 ATATAT ATA-TAT ATATA-T ATATAT ATATAT ATATAT ATATA
1503222 CTACGTAATT
Statistics
Matches: 61, Mismatches: 2, Indels: 26
0.69 0.02 0.29
Matches are distributed among these distances:
4 3 0.05
5 29 0.48
6 21 0.34
7 8 0.13
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (6 bp):
ATATAT
Found at i:1503163 original size:9 final size:9
Alignment explanation
Indices: 1503137--1503221 Score: 63
Period size: 9 Copynumber: 9.1 Consensus size: 9
1503127 GAATACTACA
1503137 ATAATATAT
1 ATAATATAT
1503146 ATACA-ATAT
1 ATA-ATATAT
1503155 -T-ATATAT
1 ATAATATAT
1503162 ATAATATAT
1 ATAATATAT
1503171 ACT-ATATAAT
1 A-TAATAT-AT
1503181 AATAATAATACT
1 -ATAAT-ATA-T
1503193 ATAATACTAT
1 ATAATA-TAT
1503203 A-ATATATAT
1 ATA-ATATAT
1503212 ATAATATAT
1 ATAATATAT
1503221 A
1 A
1503222 CTACGTAATT
Statistics
Matches: 63, Mismatches: 0, Indels: 26
0.71 0.00 0.29
Matches are distributed among these distances:
6 1 0.02
7 4 0.06
8 2 0.03
9 30 0.48
10 12 0.19
11 11 0.17
12 3 0.05
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (9 bp):
ATAATATAT
Found at i:1503964 original size:50 final size:51
Alignment explanation
Indices: 1503867--1503979 Score: 126
Period size: 50 Copynumber: 2.3 Consensus size: 51
1503857 CTCATTCGTC
* * *
1503867 GTGAAGTTG-AGTCCAGATTGAATGTTTTTCTGAGCCAGATATTCTTCATT
1 GTGAAGTTGAAATCCAGATTGAATGTTCTTCTGAGCCAGATATCCTTCATT
*
1503917 GTGAAGTTGAAATCCA-ACTTGAATGTTCTT-TGAGTTCA-ATATCCTTCATT
1 GTGAAGTTGAAATCCAGA-TTGAATGTTCTTCTGAG-CCAGATATCCTTCATT
* *
1503967 GCGAAGTTAAAAT
1 GTGAAGTTGAAAT
1503980 TGACTCTACA
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
50 36 0.67
51 18 0.33
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.38
Consensus pattern (51 bp):
GTGAAGTTGAAATCCAGATTGAATGTTCTTCTGAGCCAGATATCCTTCATT
Found at i:1505618 original size:39 final size:39
Alignment explanation
Indices: 1505575--1505649 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
1505565 CATATGCAAT
1505575 ATCCATCATCATGTTGTTTAAATTGGTTGCATTATCTAC
1 ATCCATCATCATGTTGTTTAAATTGGTTGCATTATCTAC
1505614 ATCCATCATCATGTTGTTTAAATTGGTTGCATTATC
1 ATCCATCATCATGTTGTTTAAATTGGTTGCATTATC
1505650 GGAAATGATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.25, C:0.17, G:0.13, T:0.44
Consensus pattern (39 bp):
ATCCATCATCATGTTGTTTAAATTGGTTGCATTATCTAC
Found at i:1506507 original size:23 final size:23
Alignment explanation
Indices: 1506446--1506533 Score: 104
Period size: 23 Copynumber: 3.8 Consensus size: 23
1506436 AACATATTTG
*
1506446 TCCCGAAGGACCACATAGTTTTTT
1 TCCCGAAGGACCACATAG-TTTTA
*
1506470 TCCTGAAGGACCACATAGTTTTA
1 TCCCGAAGGACCACATAGTTTTA
* * * *
1506493 TCCCGAAAGATCACATAGGTTTG
1 TCCCGAAGGACCACATAGTTTTA
*
1506516 TCTCGAAGGACCACATAG
1 TCCCGAAGGACCACATAG
1506534 AACCCTCGAA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
23 37 0.69
24 17 0.31
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (23 bp):
TCCCGAAGGACCACATAGTTTTA
Found at i:1510494 original size:47 final size:47
Alignment explanation
Indices: 1510424--1510552 Score: 199
Period size: 47 Copynumber: 2.8 Consensus size: 47
1510414 AAAAAAATCT
*
1510424 CTTACCATTT--ATCCCATAAGCTCGTAAGCTTATTTTACCAAAATA
1 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
1510469 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTTCCAATATA
1 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
* *
1510516 CTTGCCATTTAAATTCCATAAGCTCATAAGCTTATTT
1 CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTT
1510553 GTATGGTTAC
Statistics
Matches: 77, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
45 10 0.13
47 67 0.87
ACGTcount: A:0.32, C:0.22, G:0.07, T:0.39
Consensus pattern (47 bp):
CTTACCATTTAAATTCCATAAGCTCGTAAGCTTATTTTACCAAAATA
Found at i:1516900 original size:32 final size:31
Alignment explanation
Indices: 1516863--1516950 Score: 86
Period size: 32 Copynumber: 2.7 Consensus size: 31
1516853 TAAAATTTTG
*
1516863 TCAAAATAAAAAATTGTGACAAATTTATTTAA
1 TCAAAATAAAAAATTATGACAAATTTATTT-A
* * *
1516895 TCAAAATAAAAATTTATAACAAATATTTATTTC
1 TCAAAATAAAAAATTATGAC-AA-ATTTATTTA
** *
1516928 TCATTATAAAAAATTTTGACAAA
1 TCAAAATAAAAAATTATGACAAA
1516951 AAATATTCTT
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
31 1 0.02
32 19 0.42
33 17 0.38
34 8 0.18
ACGTcount: A:0.52, C:0.08, G:0.03, T:0.36
Consensus pattern (31 bp):
TCAAAATAAAAAATTATGACAAATTTATTTA
Found at i:1516950 original size:33 final size:33
Alignment explanation
Indices: 1516863--1516951 Score: 94
Period size: 34 Copynumber: 2.7 Consensus size: 33
1516853 TAAAATTTTG
*
1516863 TCAAAATAAAAAATTGTGAC-AAATTTATTTAA
1 TCAAAATAAAAAATTTTGACAAAATTTATTTAA
* *
1516895 TCAAAAT-AAAAATTTATAACAAATATTTATTT-C
1 TCAAAATAAAAAATTT-TGACAAA-ATTTATTTAA
**
1516928 TCATTATAAAAAATTTTGACAAAA
1 TCAAAATAAAAAATTTTGACAAAA
1516952 AATATTCTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
31 7 0.15
32 11 0.23
33 13 0.28
34 16 0.34
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (33 bp):
TCAAAATAAAAAATTTTGACAAAATTTATTTAA
Found at i:1524458 original size:17 final size:18
Alignment explanation
Indices: 1524436--1524469 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
1524426 TTGAAAGGTC
*
1524436 TGGAA-TAAATGATAAGT
1 TGGAATTAAATAATAAGT
1524453 TGGAATTAAATAATAAG
1 TGGAATTAAATAATAAG
1524470 ACATAATGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (18 bp):
TGGAATTAAATAATAAGT
Found at i:1529486 original size:17 final size:18
Alignment explanation
Indices: 1529464--1529498 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1529454 TTGAAAGGTC
*
1529464 TGGAA-TAAATGATAAGA
1 TGGAATTAAATAATAAGA
1529481 TGGAATTAAATAATAAGA
1 TGGAATTAAATAATAAGA
1529499 CAGAATGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.54, C:0.00, G:0.20, T:0.26
Consensus pattern (18 bp):
TGGAATTAAATAATAAGA
Found at i:1536090 original size:15 final size:15
Alignment explanation
Indices: 1536070--1536108 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
1536060 AAGCCCAAAA
1536070 TCATTTTTCAAAATT
1 TCATTTTTCAAAATT
*
1536085 TCATTTTTAAAAATT
1 TCATTTTTCAAAATT
1536100 TCATTTTTC
1 TCATTTTTC
1536109 TTTTGAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.31, C:0.13, G:0.00, T:0.56
Consensus pattern (15 bp):
TCATTTTTCAAAATT
Found at i:1541639 original size:24 final size:24
Alignment explanation
Indices: 1541605--1541655 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
1541595 AACTGACCAT
* *
1541605 TGTAAACATTATACGCATAGTGAA
1 TGTAAACATTATACACATAATGAA
*
1541629 TGTAAATATTATACACATAATGAA
1 TGTAAACATTATACACATAATGAA
1541653 TGT
1 TGT
1541656 TGATTGTGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (24 bp):
TGTAAACATTATACACATAATGAA
Found at i:1542339 original size:3 final size:3
Alignment explanation
Indices: 1542331--1542375 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
1542321 TTCACTATCA
* * *
1542331 TAT TAT TAT TAT TAT TGT TGT TGT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1542376 ACAATAATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1542846 original size:16 final size:16
Alignment explanation
Indices: 1542767--1542839 Score: 58
Period size: 16 Copynumber: 4.3 Consensus size: 16
1542757 ATGATATTTG
1542767 TAATAAATAATAAAAT
1 TAATAAATAATAAAAT
*
1542783 TAACTTTAAAAATATAAAAGT
1 TAA---TAAATA-ATAAAA-T
* * *
1542804 GATTAAATTATAAAAT
1 TAATAAATAATAAAAT
1542820 TAATAAATAATAAAA-
1 TAATAAATAATAAAAT
1542835 TAATA
1 TAATA
1542840 TATTAATTTA
Statistics
Matches: 44, Mismatches: 8, Indels: 11
0.70 0.13 0.17
Matches are distributed among these distances:
15 5 0.11
16 16 0.36
17 6 0.14
18 4 0.09
19 5 0.11
20 6 0.14
21 2 0.05
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (16 bp):
TAATAAATAATAAAAT
Found at i:1549499 original size:118 final size:118
Alignment explanation
Indices: 1549291--1549526 Score: 456
Period size: 118 Copynumber: 2.0 Consensus size: 118
1549281 TCAACGTGTA
1549291 AAGCACGATTTGTGTTCTTGTAAGTATGGGTGAGCGTTCGATCGAGTCGAGTCAAAATATTTTGA
1 AAGCACGATTTGTGTTCTTGTAAGTATGGGTGAGCGTTCGATCGAGTCGAGTCAAAATATTTTGA
1549356 GTTATTCGAGTTGACGAGTCTTATTTTATAAGTCCGAGTTGACTTGAAATTTT
66 GTTATTCGAGTTGACGAGTCTTATTTTATAAGTCCGAGTTGACTTGAAATTTT
1549409 AAGCACGATTTG-GTTTCTTGTAAGTATGGGTGAGCGTTCGATCGAGTCGAGTCAAAATATTTTG
1 AAGCACGATTTGTG-TTCTTGTAAGTATGGGTGAGCGTTCGATCGAGTCGAGTCAAAATATTTTG
1549473 AGTTATTCGAGTTGACGAGTCTTATTTTATAAGTCCGAGTTGACTTGAAATTTT
65 AGTTATTCGAGTTGACGAGTCTTATTTTATAAGTCCGAGTTGACTTGAAATTTT
1549527 TTGGAGTCGA
Statistics
Matches: 117, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
117 1 0.01
118 116 0.99
ACGTcount: A:0.25, C:0.12, G:0.25, T:0.38
Consensus pattern (118 bp):
AAGCACGATTTGTGTTCTTGTAAGTATGGGTGAGCGTTCGATCGAGTCGAGTCAAAATATTTTGA
GTTATTCGAGTTGACGAGTCTTATTTTATAAGTCCGAGTTGACTTGAAATTTT
Found at i:1550033 original size:67 final size:67
Alignment explanation
Indices: 1549949--1550084 Score: 272
Period size: 67 Copynumber: 2.0 Consensus size: 67
1549939 CCGTTAATCC
1549949 TTGGACATCAAGACGTTTGATGGGAAGATATTTTGGAGAGTTAACCTTCCCACCATCCATTGGGG
1 TTGGACATCAAGACGTTTGATGGGAAGATATTTTGGAGAGTTAACCTTCCCACCATCCATTGGGG
1550014 CT
66 CT
1550016 TTGGACATCAAGACGTTTGATGGGAAGATATTTTGGAGAGTTAACCTTCCCACCATCCATTGGGG
1 TTGGACATCAAGACGTTTGATGGGAAGATATTTTGGAGAGTTAACCTTCCCACCATCCATTGGGG
1550081 CT
66 CT
1550083 TT
1 TT
1550085 AGGGGCTAAT
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 69 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (67 bp):
TTGGACATCAAGACGTTTGATGGGAAGATATTTTGGAGAGTTAACCTTCCCACCATCCATTGGGG
CT
Found at i:1553228 original size:43 final size:43
Alignment explanation
Indices: 1553115--1553216 Score: 127
Period size: 42 Copynumber: 2.4 Consensus size: 43
1553105 TTTATAATGT
* * ** * *
1553115 TAAAATATATT-CTTTAATAGTAAAAAATGTAGCAAATTATTA
1 TAAAATATATTATTTTAAGAGTTTAAAATGTAACAAATGATTA
*
1553157 TAAAATATATTATTTTAAGAGTTTAAAATGTAATAAATGATTA
1 TAAAATATATTATTTTAAGAGTTTAAAATGTAACAAATGATTA
1553200 T-AAATATATTATTTTAA
1 TAAAATATATTATTTTAA
1553217 TTATTTTAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
42 27 0.52
43 25 0.48
ACGTcount: A:0.49, C:0.02, G:0.07, T:0.42
Consensus pattern (43 bp):
TAAAATATATTATTTTAAGAGTTTAAAATGTAACAAATGATTA
Found at i:1561008 original size:18 final size:18
Alignment explanation
Indices: 1560970--1561008 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
1560960 CTTATATCCG
* *
1560970 ATCTTATTACTTAATTTA
1 ATCTTATCACTTAATTCA
*
1560988 ATCTTATCACTTACTTCA
1 ATCTTATCACTTAATTCA
1561006 ATC
1 ATC
1561009 CTTTCAAACA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.00, T:0.49
Consensus pattern (18 bp):
ATCTTATCACTTAATTCA
Found at i:1574083 original size:32 final size:32
Alignment explanation
Indices: 1574042--1574104 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
1574032 ACAATGAGCA
1574042 TTACGACCTTTGCATACGCAATGCTCAAAGTG
1 TTACGACCTTTGCATACGCAATGCTCAAAGTG
1574074 TTACGACCTTTGCATACGCAATGCTCAAAGT
1 TTACGACCTTTGCATACGCAATGCTCAAAGT
1574105 TGGGATCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (32 bp):
TTACGACCTTTGCATACGCAATGCTCAAAGTG
Found at i:1582058 original size:29 final size:30
Alignment explanation
Indices: 1582026--1582112 Score: 106
Period size: 31 Copynumber: 2.9 Consensus size: 30
1582016 TTTGGTCAGA
* *
1582026 GACCAAAATATAAAATTT-TAAAGTTAAGT
1 GACCAAAGTATAAAATTTGAAAAGTTAAGT
*
1582055 GACCAAAGTATAAACTTTGGAAAAGTTAAGT
1 GACCAAAGTATAAAATTT-GAAAAGTTAAGT
1582086 GACCAAAGTAT-AAATGTTGGAAAAGTT
1 GACCAAAGTATAAAAT-TT-GAAAAGTT
1582113 TAGGGACTAA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
29 16 0.31
30 3 0.06
31 32 0.63
ACGTcount: A:0.47, C:0.08, G:0.17, T:0.28
Consensus pattern (30 bp):
GACCAAAGTATAAAATTTGAAAAGTTAAGT
Found at i:1582083 original size:31 final size:31
Alignment explanation
Indices: 1582045--1582112 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
1582035 ATAAAATTTT
1582045 AAAGTTAAGTGACCAAAGTATAAACT-TTGGA
1 AAAGTTAAGTGACCAAAGTATAAA-TGTTGGA
1582076 AAAGTTAAGTGACCAAAGTATAAATGTTGGA
1 AAAGTTAAGTGACCAAAGTATAAATGTTGGA
1582107 AAAGTT
1 AAAGTT
1582113 TAGGGACTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
30 1 0.03
31 35 0.97
ACGTcount: A:0.46, C:0.07, G:0.21, T:0.26
Consensus pattern (31 bp):
AAAGTTAAGTGACCAAAGTATAAATGTTGGA
Found at i:1586894 original size:11 final size:11
Alignment explanation
Indices: 1586874--1586954 Score: 74
Period size: 12 Copynumber: 7.1 Consensus size: 11
1586864 AAAAAATAAG
1586874 AAAAAG-AAAA
1 AAAAAGAAAAA
*
1586884 AAATAGAAAAA
1 AAAAAGAAAAA
*
1586895 AAATAGAAAAAA
1 AAAAAG-AAAAA
1586907 AAACAAGAAAAA
1 AAA-AAGAAAAA
1586919 AAGAAAGAAGAAA
1 AA-AAAGAA-AAA
*
1586932 AAAAATAAAAA
1 AAAAAGAAAAA
* *
1586943 GAAATGAAAAA
1 AAAAAGAAAAA
1586954 A
1 A
1586955 GAAGAAGATG
Statistics
Matches: 59, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
10 5 0.08
11 21 0.36
12 25 0.42
13 8 0.14
ACGTcount: A:0.83, C:0.01, G:0.11, T:0.05
Consensus pattern (11 bp):
AAAAAGAAAAA
Found at i:1586897 original size:12 final size:12
Alignment explanation
Indices: 1586880--1586954 Score: 68
Period size: 11 Copynumber: 6.3 Consensus size: 12
1586870 TAAGAAAAAG
1586880 AAAAAAATAG-A
1 AAAAAAATAGAA
1586891 AAAAAAATAGAA
1 AAAAAAATAGAA
*
1586903 AAAAAAACAAGAA
1 AAAAAAA-TAGAA
1586916 AAAAAGAA-AGAA
1 AAAAA-AATAGAA
*
1586928 GAAAAAAA-ATAA
1 -AAAAAAATAGAA
*
1586940 AAAGAAAT-GAA
1 AAAAAAATAGAA
1586951 AAAA
1 AAAA
1586955 GAAGAAGATG
Statistics
Matches: 54, Mismatches: 5, Indels: 10
0.78 0.07 0.14
Matches are distributed among these distances:
11 21 0.39
12 17 0.31
13 14 0.26
14 2 0.04
ACGTcount: A:0.83, C:0.01, G:0.11, T:0.05
Consensus pattern (12 bp):
AAAAAAATAGAA
Found at i:1586902 original size:27 final size:27
Alignment explanation
Indices: 1586864--1586953 Score: 79
Period size: 25 Copynumber: 3.5 Consensus size: 27
1586854 CATAAGAGCT
1586864 AAAAAATAAGAAAAAGAAAAAAATAGAA
1 AAAAAAT-AGAAAAAGAAAAAAATAGAA
*
1586892 AAAAAATAG-AAAA-AAAAACA-AG--
1 AAAAAATAGAAAAAGAAAAAAATAGAA
1586914 AAAAAA-AGAAAGAAGAAAAAAAATA-AA
1 AAAAAATAGAAA-AAG-AAAAAAATAGAA
*
1586941 AAGAAAT-GAAAAA
1 AAAAAATAGAAAAA
1586954 AGAAGAAGAT
Statistics
Matches: 51, Mismatches: 3, Indels: 18
0.71 0.04 0.25
Matches are distributed among these distances:
21 2 0.04
22 8 0.16
23 2 0.04
24 2 0.04
25 12 0.24
26 7 0.14
27 11 0.22
28 7 0.14
ACGTcount: A:0.82, C:0.01, G:0.11, T:0.06
Consensus pattern (27 bp):
AAAAAATAGAAAAAGAAAAAAATAGAA
Found at i:1586931 original size:39 final size:39
Alignment explanation
Indices: 1586864--1586942 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 39
1586854 CATAAGAGCT
*
1586864 AAAAAATAAGAAAAAGAAAAAAATAGAAAAAAAATAGAAA
1 AAAAAACAAGAAAAAGAAAAAAATAGAAAAAAAATA-AAA
*
1586904 AAAAAACAAGAAAAA-AAGAAAGA-AGAAAAAAAATAAAA
1 AAAAAACAAGAAAAAGAA-AAAAATAGAAAAAAAATAAAA
1586942 A
1 A
1586943 GAAATGAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
38 4 0.11
39 14 0.39
40 18 0.50
ACGTcount: A:0.84, C:0.01, G:0.10, T:0.05
Consensus pattern (39 bp):
AAAAAACAAGAAAAAGAAAAAAATAGAAAAAAAATAAAA
Found at i:1586935 original size:30 final size:30
Alignment explanation
Indices: 1586864--1586960 Score: 80
Period size: 30 Copynumber: 3.4 Consensus size: 30
1586854 CATAAGAGCT
* * * *
1586864 AAAAAATAAGAAAAAGAA-AAAAATAGA-A
1 AAAAAAGAAGAAAAAAAATAAAAAGAAATA
* *
1586892 AAAAAA-TAG-AAAAAAA-AACAAGAAA-A
1 AAAAAAGAAGAAAAAAAATAAAAAGAAATA
*
1586918 AAAGAAAGAAGAAAAAAAATAAAAAGAAATG
1 AAA-AAAGAAGAAAAAAAATAAAAAGAAATA
1586949 AAAAAAGAAGAA
1 AAAAAAGAAGAA
1586961 GATGAAAGGT
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
26 16 0.29
27 5 0.09
28 8 0.14
29 7 0.12
30 17 0.30
31 3 0.05
ACGTcount: A:0.81, C:0.01, G:0.12, T:0.05
Consensus pattern (30 bp):
AAAAAAGAAGAAAAAAAATAAAAAGAAATA
Found at i:1586956 original size:27 final size:25
Alignment explanation
Indices: 1586866--1586957 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 25
1586856 TAAGAGCTAA
1586866 AAAATAAGAAAAAGAAAAAAATAGAAA-
1 AAAA-AAGAAAAA-AAAAAAA-AGAAAG
*
1586893 AAAAATAGAAAAAAAAACAAGAAAAAAAG
1 AAAAA-AG-AAAAAAAA-AA-AAAGAAAG
*
1586922 AAAGAAGAAAAAAAATAAAAAGAAATG
1 AAAAAAGAAAAAAAA-AAAAAGAAA-G
1586949 AAAAAAGAA
1 AAAAAAGAA
1586958 GAAGATGAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
26 7 0.13
27 28 0.52
28 13 0.24
29 6 0.11
ACGTcount: A:0.82, C:0.01, G:0.12, T:0.05
Consensus pattern (25 bp):
AAAAAAGAAAAAAAAAAAAAGAAAG
Found at i:1586959 original size:15 final size:14
Alignment explanation
Indices: 1586866--1586960 Score: 60
Period size: 13 Copynumber: 6.9 Consensus size: 14
1586856 TAAGAGCTAA
1586866 AAAATAAGAA-AAAG
1 AAAA-AAGAAGAAAG
1586880 AAAAAA-ATAGAAA-
1 AAAAAAGA-AGAAAG
1586893 AAAAATAGAA-AAA-
1 AAAAA-AGAAGAAAG
1586906 AAAACAAGAA-AAA-
1 AAAA-AAGAAGAAAG
* *
1586919 AAGAAAGAAGAAAA
1 AAAAAAGAAGAAAG
*
1586933 AAAATAAAAAGAAATG
1 AAAA-AAGAAGAAA-G
1586949 AAAAAAGAAGAA
1 AAAAAAGAAGAA
1586961 GATGAAAGGT
Statistics
Matches: 67, Mismatches: 5, Indels: 17
0.75 0.06 0.19
Matches are distributed among these distances:
12 6 0.09
13 28 0.42
14 13 0.19
15 16 0.24
16 4 0.06
ACGTcount: A:0.81, C:0.01, G:0.13, T:0.05
Consensus pattern (14 bp):
AAAAAAGAAGAAAG
Found at i:1586962 original size:18 final size:16
Alignment explanation
Indices: 1586864--1586962 Score: 60
Period size: 16 Copynumber: 6.1 Consensus size: 16
1586854 CATAAGAGCT
* *
1586864 AAAAAATAAGAAAAAG
1 AAAAAAAAAGAAGAAG
* * *
1586880 AAAAAAATAGAAAAAA
1 AAAAAAAAAGAAGAAG
* *
1586896 AATAGAAAAAAAAACAAG
1 AA-A-AAAAAAGAAGAAG
*
1586914 AAAAAAAGA-AAGAAG
1 AAAAAAAAAGAAGAAG
1586929 AAAAAAAATA-AA-AAG
1 AAAAAAAA-AGAAGAAG
1586944 AAATGAAAAAAGAAGAAG
1 AAA--AAAAAAGAAGAAG
1586962 A
1 A
1586963 TGAAAGGTGC
Statistics
Matches: 66, Mismatches: 10, Indels: 12
0.75 0.11 0.14
Matches are distributed among these distances:
15 18 0.27
16 24 0.36
17 9 0.14
18 15 0.23
ACGTcount: A:0.81, C:0.01, G:0.13, T:0.05
Consensus pattern (16 bp):
AAAAAAAAAGAAGAAG
Found at i:1588623 original size:31 final size:31
Alignment explanation
Indices: 1588580--1588640 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
1588570 AATTTTAAAG
*
1588580 TTAAGTGACCAAAGTATAAACCTTAGAAAAA
1 TTAAATGACCAAAGTATAAACCTTAGAAAAA
*
1588611 TTAAATGACCAAAGTATAAACTTTAGAAAA
1 TTAAATGACCAAAGTATAAACCTTAGAAAA
1588641 GTTTAGAGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.25
Consensus pattern (31 bp):
TTAAATGACCAAAGTATAAACCTTAGAAAAA
Found at i:1588652 original size:31 final size:31
Alignment explanation
Indices: 1588576--1588654 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 31
1588566 ACAAAATTTT
* *
1588576 AAAGTTAAGTGACCAAAGTATAAACCTTAGA
1 AAAGTTTAGAGACCAAAGTATAAACCTTAGA
* * *
1588607 AAA-ATTAAATGACCAAAGTATAAACTTTAGA
1 AAAGTTTAGA-GACCAAAGTATAAACCTTAGA
1588638 AAAGTTTAGAGACCAAA
1 AAAGTTTAGAGACCAAA
1588655 ATGGTAATTT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
30 2 0.05
31 33 0.85
32 4 0.10
ACGTcount: A:0.52, C:0.11, G:0.14, T:0.23
Consensus pattern (31 bp):
AAAGTTTAGAGACCAAAGTATAAACCTTAGA
Found at i:1591543 original size:18 final size:19
Alignment explanation
Indices: 1591516--1591553 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
1591506 TTTGGTCAAA
1591516 GTCAACGGTTAACA-GTCG
1 GTCAACGGTTAACAGGTCG
*
1591534 GTCAATGGTTAACAGGTCG
1 GTCAACGGTTAACAGGTCG
1591553 G
1 G
1591554 GCTGGGCAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.26, C:0.18, G:0.32, T:0.24
Consensus pattern (19 bp):
GTCAACGGTTAACAGGTCG
Found at i:1594530 original size:44 final size:44
Alignment explanation
Indices: 1594461--1594611 Score: 176
Period size: 44 Copynumber: 3.4 Consensus size: 44
1594451 TATATAACTT
* * *
1594461 GTAAGACCTTATCGTTTCTGCAGGCTCCTCTGTTATGTGCAAGG
1 GTAAGACCTTACCGTTTTTGCAGGCTCCTCTGCTATGTGCAAGG
* ** **
1594505 GTAAGACCTTACCGTTTTTGTAGGCTCCTCTGCTACATATAAGG
1 GTAAGACCTTACCGTTTTTGCAGGCTCCTCTGCTATGTGCAAGG
** * * *
1594549 GTAAGACCTTATTGTTTATGCAGGCTCCTTTGCTCTGTGCAAGG
1 GTAAGACCTTACCGTTTTTGCAGGCTCCTCTGCTATGTGCAAGG
*
1594593 GTAAGACCTTACCGCTTTT
1 GTAAGACCTTACCGTTTTT
1594612 CACAAGCTCC
Statistics
Matches: 85, Mismatches: 22, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
44 85 1.00
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.35
Consensus pattern (44 bp):
GTAAGACCTTACCGTTTTTGCAGGCTCCTCTGCTATGTGCAAGG
Found at i:1594708 original size:30 final size:30
Alignment explanation
Indices: 1594664--1594721 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
1594654 AGGCTCCTCA
* *
1594664 GCTTTATGCTCAGGGTAAGTCCTTACTGCT
1 GCTTTATGCACAGGGTAAGCCCTTACTGCT
*
1594694 GCTTTGTGCACAGGGTAAGCCCTTACTG
1 GCTTTATGCACAGGGTAAGCCCTTACTG
1594722 GGTGTACAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.17, C:0.24, G:0.26, T:0.33
Consensus pattern (30 bp):
GCTTTATGCACAGGGTAAGCCCTTACTGCT
Found at i:1595693 original size:50 final size:50
Alignment explanation
Indices: 1595639--1595776 Score: 145
Period size: 50 Copynumber: 2.8 Consensus size: 50
1595629 AAATAAATTT
*
1595639 ACATAAAGACCAAAAAAGAGTTTATTAAAACAATAAGCACATGACAAAAA
1 ACATAAAGACCAAAAAAGAGTTTATTACAACAATAAGCACATGACAAAAA
** * * * * * * *
1595689 ACATATGGGCAAAAAAAGGGTTTGTTGCAACAATAAGTACATGACAAATA
1 ACATAAAGACCAAAAAAGAGTTTATTACAACAATAAGCACATGACAAAAA
* *
1595739 ACATAAAGA-CAAAAAAAAG-GTACTTACAACAATAAGCA
1 ACATAAAGACCAAAAAAGAGTTTA-TTACAACAATAAGCA
1595777 AATTAGGAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 3
0.74 0.22 0.03
Matches are distributed among these distances:
48 1 0.01
49 20 0.30
50 46 0.69
ACGTcount: A:0.55, C:0.14, G:0.14, T:0.17
Consensus pattern (50 bp):
ACATAAAGACCAAAAAAGAGTTTATTACAACAATAAGCACATGACAAAAA
Found at i:1601181 original size:20 final size:20
Alignment explanation
Indices: 1601131--1601181 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
1601121 ATCGTTTGTA
1601131 TTCTTTATTTTTTATATTAT
1 TTCTTTATTTTTTATATTAT
* *
1601151 ATCTTTATTTTTCT-T-CTAT
1 TTCTTTATTTTT-TATATTAT
1601170 TTCTTTATTTTT
1 TTCTTTATTTTT
1601182 CAGTAATTCT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 14 0.52
20 12 0.44
21 1 0.04
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.75
Consensus pattern (20 bp):
TTCTTTATTTTTTATATTAT
Found at i:1604258 original size:28 final size:28
Alignment explanation
Indices: 1604218--1604276 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 28
1604208 CAAACTCATT
1604218 CATGCATTTACCAACTATAAATGC-GTAC
1 CATGCATTTACCAACTATAAAT-CTGTAC
*
1604246 CATGCATTTACCAACTATCAATCTGTAC
1 CATGCATTTACCAACTATAAATCTGTAC
1604274 CAT
1 CAT
1604277 AAAGCATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 1 0.03
28 28 0.97
ACGTcount: A:0.34, C:0.27, G:0.08, T:0.31
Consensus pattern (28 bp):
CATGCATTTACCAACTATAAATCTGTAC
Found at i:1604638 original size:19 final size:20
Alignment explanation
Indices: 1604588--1604641 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 20
1604578 CGATTAATCA
*
1604588 GTCATGTCAAAGTCAA-ATG
1 GTCAGGTCAAAGTCAACATG
1604607 GTCAGGT-AAAGTCAACAT-
1 GTCAGGTCAAAGTCAACATG
**
1604625 GTTGGGTCAAAGTCAAC
1 GTCAGGTCAAAGTCAAC
1604642 GAGTCAGGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 13 0.43
19 17 0.57
ACGTcount: A:0.35, C:0.17, G:0.24, T:0.24
Consensus pattern (20 bp):
GTCAGGTCAAAGTCAACATG
Found at i:1606394 original size:45 final size:45
Alignment explanation
Indices: 1606320--1606431 Score: 136
Period size: 45 Copynumber: 2.5 Consensus size: 45
1606310 ATTCAAGCTT
* * * * *
1606320 ATAATGCACCATTATTCCTTTTCATTTATGGCATTCTTTCATGCCG
1 ATAATGCACCATTA-TGCATTTCAATTATGACATCCTTTCATGCCG
*
1606366 ATAATGCACCCA-TATGCATTTCAATTATGACATCCTTTCATGCCT
1 ATAATGCA-CCATTATGCATTTCAATTATGACATCCTTTCATGCCG
*
1606411 TTAATGCACCATTATGCATTT
1 ATAATGCACCATTATGCATTT
1606432 GGTTTTTTAT
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
44 3 0.05
45 41 0.72
46 10 0.18
47 3 0.05
ACGTcount: A:0.26, C:0.24, G:0.10, T:0.40
Consensus pattern (45 bp):
ATAATGCACCATTATGCATTTCAATTATGACATCCTTTCATGCCG
Found at i:1606662 original size:54 final size:54
Alignment explanation
Indices: 1606579--1607132 Score: 628
Period size: 54 Copynumber: 10.3 Consensus size: 54
1606569 TTTATTAGGA
* * * ** * * * *
1606579 TGCACACGTAGTGCCTATATGGTCGTTCATCGATTCATGATAAATTCCGTGAGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* * * *
1606633 TGCCCACATTA-TGCCTGTACGATTATTCATCCACTCATGATGAATTCCGTGGGC
1 TGCACACA-TAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* * * * * * * *
1606687 TACACACGTAGTGCCTGTGCAGTTATTTATCAACTCATGATAAATTTCATGGGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* * * *
1606741 TGCACACATAGTTCATGTACGGTTATTCATAAACTCATGATGAATTTCGTGGGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
** * * * *
1606795 CACACACATAATGTCTGTACGGTTATTCATCAACTCATGATAAATTTCGTGGGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* *
1606849 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCTGTGGGA
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* * **
1606903 TGCACACATAGTGCCTGTATGGTTATTCAACAACTCATGATGAATTTTGTGGGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* *
1606957 TGCACACATAGTGCCTCTACGGTTATTCATCAACTTATGATGAATTCCGAT-GGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCG-TGGGT
* * *
1607011 TGCACACATAGTTCCAGTACGAG-TATTCGTCAACTCATGATGAATTCCGTGGGT
1 TGCACACATAGTGCCTGTACG-GTTATTCATCAACTCATGATGAATTCCGTGGGT
* * * **
1607065 TGCACACATAGTGCATGTACGGTTACTCGTCAACTCATGATGAATTATGTGGGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
*
1607119 TTCACACATAGTGC
1 TGCACACATAGTGC
1607133 TAAAACGATT
Statistics
Matches: 422, Mismatches: 72, Indels: 12
0.83 0.14 0.02
Matches are distributed among these distances:
53 4 0.01
54 414 0.98
55 4 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.33
Consensus pattern (54 bp):
TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
Found at i:1607165 original size:162 final size:160
Alignment explanation
Indices: 1606644--1607203 Score: 590
Period size: 162 Copynumber: 3.5 Consensus size: 160
1606634 GCCCACATTA
* * * * * * * * *
1606644 TGCCTGTACGATTATTCATCCACTCATGATGAATTCCGTGGGCTACACACGTAGTGCCTGTGCAG
1 TGCCTATACGGTTATTCATCAACT-ATGATGAATTCCGTGGGTTGCACACATAGTGCCAGTACGG
* * * * * *
1606709 TTATTTATCAACTCATGATAAATTTCATGGGTTGCACACATAGTTCATGTACGGTTATTCATAAA
65 TTATTCATCAACTCATGATGAATTCCGTGGGTTGCACACATAGTGCATGTACGGTTATTCATCAA
* *
1606774 CTCATGATGAATTTCGTGGGTCACACACATAA
130 CTCATGATGAATTT-GTGGGTTACACACATAG
* * * * *
1606806 TGTCTGTACGGTTATTCATCAACTCATGATAAATTTCGTGGGTTGCACACATAGTGCCTGTACGG
1 TGCCTATACGGTTATTCATCAACT-ATGATGAATTCCGTGGGTTGCACACATAGTGCCAGTACGG
* * * * *
1606871 TTATTCATCAACTCATGATGAATTCTGTGGGATGCACACATAGTGCCTGTATGGTTATTCAACAA
65 TTATTCATCAACTCATGATGAATTCCGTGGGTTGCACACATAGTGCATGTACGGTTATTCATCAA
*
1606936 CTCATGATGAATTTTGTGGGTTGCACACATAG
130 CTCATGATGAA-TTTGTGGGTTACACACATAG
* *
1606968 TGCCTCTACGGTTATTCATCAACTTATGATGAATTCCGAT-GGTTGCACACATAGTTCCAGTACG
1 TGCCTATACGGTTATTCATCAAC-TATGATGAATTCCG-TGGGTTGCACACATAGTGCCAGTACG
* * *
1607032 AG-TATTCGTCAACTCATGATGAATTCCGTGGGTTGCACACATAGTGCATGTACGGTTACTCGTC
64 -GTTATTCATCAACTCATGATGAATTCCGTGGGTTGCACACATAGTGCATGTACGGTTATTCATC
*
1607096 AACTCATGATGAATTATGTGGGTTTCACACATAG
128 AACTCATGATGAATT-TGTGGGTTACACACATAG
* * * * * *** *
1607130 TG-CTAAAACGATTATTCATCCACATAGGTTGAATTCCGTGAAATGCACA-ATTAGTGCC-GAAA
1 TGCCT-ATACGGTTATTCATCAAC-TATGATGAATTCCGTGGGTTGCACACA-TAGTGCCAG-TA
1607192 CGGTTATTCATC
62 CGGTTATTCATC
1607204 CATATAAGAT
Statistics
Matches: 336, Mismatches: 52, Indels: 20
0.82 0.13 0.05
Matches are distributed among these distances:
161 8 0.02
162 322 0.96
163 6 0.02
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (160 bp):
TGCCTATACGGTTATTCATCAACTATGATGAATTCCGTGGGTTGCACACATAGTGCCAGTACGGT
TATTCATCAACTCATGATGAATTCCGTGGGTTGCACACATAGTGCATGTACGGTTATTCATCAAC
TCATGATGAATTTGTGGGTTACACACATAG
Found at i:1607185 original size:54 final size:53
Alignment explanation
Indices: 1607127--1607239 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 53
1607117 GTTTCACACA
* * * *
1607127 TAGTGCTAAAACGATTATTCATCCACATAGGTTGAATTCCGTGAAATGCACAAT
1 TAGTGCCAAAACGATTATTCATCCACATAAGATGAATTCCG-GAAAGGCACAAT
* * * *
1607181 TAGTGCCGAAACGGTTATTCATCCATATAAGATGAATTCCGGAAAGGCACACT
1 TAGTGCCAAAACGATTATTCATCCACATAAGATGAATTCCGGAAAGGCACAAT
1607234 TAGTGC
1 TAGTGC
1607240 ATATTTGGTA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 16 0.31
54 35 0.69
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.27
Consensus pattern (53 bp):
TAGTGCCAAAACGATTATTCATCCACATAAGATGAATTCCGGAAAGGCACAAT
Found at i:1607592 original size:20 final size:21
Alignment explanation
Indices: 1607567--1607607 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
1607557 GCTCCTCATT
1607567 ATCGATA-ACCATACCATGGC
1 ATCGATACACCATACCATGGC
*
1607587 ATCGATACTACCATACTATGG
1 ATCGATAC-ACCATACCATGG
1607608 TGCTGATACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
22 11 0.61
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (21 bp):
ATCGATACACCATACCATGGC
Found at i:1607684 original size:20 final size:21
Alignment explanation
Indices: 1607659--1607711 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
1607649 TGCTTTGAAA
*
1607659 TGGTATCGATACCTTC-CCTT
1 TGGTATCGATACCTCCTCCTT
1607679 TGGTATCGATA-CTCCTCCTT
1 TGGTATCGATACCTCCTCCTT
*
1607699 CGGTATCGATACC
1 TGGTATCGATACC
1607712 GATTGAATCC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 3 0.10
20 25 0.86
21 1 0.03
ACGTcount: A:0.17, C:0.30, G:0.17, T:0.36
Consensus pattern (21 bp):
TGGTATCGATACCTCCTCCTT
Found at i:1612289 original size:54 final size:54
Alignment explanation
Indices: 1611716--1612270 Score: 718
Period size: 54 Copynumber: 10.2 Consensus size: 54
1611706 TTTATTAGGA
* * * * * *
1611716 TGCACACGTAGTGCCTATACGGTCATTCATCAATTCATGATAAATTCCGTGAGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* * * *
1611770 TACCCACATAGTGCATGTACGGTTATTCATCAATTCATGATGAATTCCGTGGGAT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGG-T
* * * *
1611825 GTGCAAACATAGTGCCTATACGGTTATTCATCAACTCATGATGAATTTTCTTGGGT
1 -TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAA-TTCCGTGGGT
* * *
1611881 TGCACACATAGTGCCTATATGGTTATTCATCAACTCATGATGAATTTCGTGGGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* * *
1611935 CGCACACATAGTGCATGTACGGTTATTCATCAACTCATGATGAATTCCGCT-AGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCG-TGGGT
* * * * *
1611989 TGCACACATAGTACTTGTATC-GTTATTCATCTACTCATTATGAATTCTGTGGGT
1 TGCACACATAGTGCCTGTA-CGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* *
1612043 TGCACATATAGTGCCTGTACAGTTATTCATCAACTCATGATGAATTCCGTGGGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* * * *
1612097 TGCACACTTAGTTCCTGTACGGTTATTCATCAACTCATGATAAATTTCGTGGGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* *
1612151 TACACACATAGTGTCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* *
1612205 TGCACACATAGTGCTTGTACGGTTATTCATCAACTCATGATGAATTCCTTGGGT
1 TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
* *
1612259 TTCACATATAGT
1 TGCACACATAGT
1612271 ACCAAAAGGG
Statistics
Matches: 438, Mismatches: 56, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
53 2 0.00
54 345 0.79
55 45 0.10
56 39 0.09
57 7 0.02
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (54 bp):
TGCACACATAGTGCCTGTACGGTTATTCATCAACTCATGATGAATTCCGTGGGT
Found at i:1612343 original size:162 final size:162
Alignment explanation
Indices: 1611850--1612343 Score: 403
Period size: 162 Copynumber: 3.0 Consensus size: 162
1611840 CTATACGGTT
* * * **
1611850 ATTCATCAACTCATGATGAATTTTCTTGGGTTGCACACATAGTGCCTATATGGTTATTCATCAAC
1 ATTCATCAACTCATGATGAA-TTCCGTGGGTTGCACACATAGTGCCTGTACAGTTATTCATCAAC
* * * * ** * *
1611915 TCATGATGAATTTCGTGGGTCGCACACATAGT-GCATGTACGGTTATTCATCAACTCATGATGAA
65 TCATGATGAATTCCGTGGGTTGCACACTTAGTACCA-AAACGGTTATTCATCAACTCAGGATAAA
* ** * * * *
1611979 TTCCGCT-AGTTGCACACATA--GTACTTGTATCG-TT
129 TTTCG-TGAAATACACACATAGCGT-C-CG-AACGATA
* * * *
1612013 ATTCATCTACTCATTATGAATTCTGTGGGTTGCACATATAGTGCCTGTACAGTTATTCATCAACT
1 ATTCATCAACTCATGATGAATTCCGTGGGTTGCACACATAGTGCCTGTACAGTTATTCATCAACT
* *** *
1612078 CATGATGAATTCCGTGGGTTGCACACTTAGTTCCTGTACGGTTATTCATCAACTCATGATAAATT
66 CATGATGAATTCCGTGGGTTGCACACTTAGTACCAAAACGGTTATTCATCAACTCAGGATAAATT
*** * * * * *
1612143 TCGTGGGTTACACACATAGTGTCTGTACGGTT
131 TCGTGAAATACACACATAGCGTCCGAACGATA
* *
1612175 ATTCATCAACTCATGATGAATTCCGTGGGTTGCACACATAGTGCTTGTACGGTTATTCATCAACT
1 ATTCATCAACTCATGATGAATTCCGTGGGTTGCACACATAGTGCCTGTACAGTTATTCATCAACT
* * * * * *
1612240 CATGATGAATTCCTTGGGTTTCACA-TATAGTACCAAAAGGGTTATTCATCCA-TAGAGGATGAA
66 CATGATGAATTCCGTGGGTTGCACACT-TAGTACCAAAACGGTTATTCATCAACT-CAGGATAAA
* * *
1612303 TTAT-GTGAAATGCATACTTAGCG-CCGAAACGATA
129 TT-TCGTGAAATACACACATAGCGTCCG-AACGATA
1612337 ATTCATC
1 ATTCATC
1612344 CACATAGGAT
Statistics
Matches: 274, Mismatches: 48, Indels: 19
0.80 0.14 0.06
Matches are distributed among these distances:
161 7 0.03
162 244 0.89
163 21 0.08
164 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (162 bp):
ATTCATCAACTCATGATGAATTCCGTGGGTTGCACACATAGTGCCTGTACAGTTATTCATCAACT
CATGATGAATTCCGTGGGTTGCACACTTAGTACCAAAACGGTTATTCATCAACTCAGGATAAATT
TCGTGAAATACACACATAGCGTCCGAACGATA
Found at i:1612819 original size:20 final size:20
Alignment explanation
Indices: 1612794--1612844 Score: 86
Period size: 19 Copynumber: 2.6 Consensus size: 20
1612784 ACTTTGAAAT
*
1612794 GGTATCGATACCTTCCCTTC
1 GGTATCGATACCTCCCCTTC
1612814 GGTATCGATA-CTCCCCTTC
1 GGTATCGATACCTCCCCTTC
1612833 GGTATCGATACC
1 GGTATCGATACC
1612845 GATTGAATCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 18 0.62
20 11 0.38
ACGTcount: A:0.18, C:0.33, G:0.18, T:0.31
Consensus pattern (20 bp):
GGTATCGATACCTCCCCTTC
Found at i:1617516 original size:19 final size:20
Alignment explanation
Indices: 1617472--1617522 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
1617462 TAACGGGTCG
* *
1617472 GGTCAAAGTCAATGGGTTTG
1 GGTCAAAGTCAATGGGCTTA
1617492 GGTCAAAGTCAAT-GGCTTA
1 GGTCAAAGTCAATGGGCTTA
1617511 GGTCAAAGTCAA
1 GGTCAAAGTCAA
1617523 CGTGTCAGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.25
Consensus pattern (20 bp):
GGTCAAAGTCAATGGGCTTA
Found at i:1620581 original size:43 final size:44
Alignment explanation
Indices: 1620478--1620589 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 44
1620468 GTACTCTTCA
*
1620478 ACATAGCAGAGGAGCCTAT-AGAAACAATAAGGTTTTACCCTAGC
1 ACATAGCAGAGGAGCCT-TCAGAAACAATAAGGTCTTACCCTAGC
* ** *** *
1620522 ACATAGCATACAAGCCTTCAGAAATGGTAA-GTCTTACCCTTGC
1 ACATAGCAGAGGAGCCTTCAGAAACAATAAGGTCTTACCCTAGC
*
1620565 ACATAGCAGAGGAGCCTTCAAAAAC
1 ACATAGCAGAGGAGCCTTCAGAAAC
1620590 TTCCTCCAAC
Statistics
Matches: 54, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
43 32 0.59
44 22 0.41
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.21
Consensus pattern (44 bp):
ACATAGCAGAGGAGCCTTCAGAAACAATAAGGTCTTACCCTAGC
Found at i:1626373 original size:44 final size:44
Alignment explanation
Indices: 1626325--1626456 Score: 185
Period size: 44 Copynumber: 3.0 Consensus size: 44
1626315 TGCGGAAAAT
*
1626325 GGTAAGGTCTTACCCTTACACATAGCAGAGGAACCTGT-AGAAAC
1 GGTAAGGTCTTACCCTTGCACATAGCAGAGGAACCT-TCAGAAAC
* * * **
1626369 GGTAAGGTCTTACCCTTGCACATAGTAGATGAGCCTTCAGAATT
1 GGTAAGGTCTTACCCTTGCACATAGCAGAGGAACCTTCAGAAAC
*
1626413 GGTAAGGTCTTACCCTTGCACATAGCAGAGGAGCCTTCAGAAAC
1 GGTAAGGTCTTACCCTTGCACATAGCAGAGGAACCTTCAGAAAC
1626457 TTCCTCCAAC
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
43 1 0.01
44 76 0.99
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.23
Consensus pattern (44 bp):
GGTAAGGTCTTACCCTTGCACATAGCAGAGGAACCTTCAGAAAC
Found at i:1627061 original size:15 final size:15
Alignment explanation
Indices: 1627041--1627079 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
1627031 AAACCGACTG
* *
1627041 ATAATAAAAGTAATT
1 ATAATAAAAGGAATA
1627056 ATAATAAAAGGAATA
1 ATAATAAAAGGAATA
*
1627071 ATATTAAAA
1 ATAATAAAA
1627080 AACTATTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (15 bp):
ATAATAAAAGGAATA
Found at i:1627780 original size:263 final size:264
Alignment explanation
Indices: 1627370--1627910 Score: 989
Period size: 263 Copynumber: 2.0 Consensus size: 264
1627360 GACAATTGAC
1627370 GGTCTTGTCATCTTCCTTGTCGATTATCGTTGTCATCATCACCCTTGTCGTCGACAAGTAGAGTG
1 GGTCTTGTCATCTTCCTTGTCGATTATCGTTGTCATCATCACCCTTGTCGTCGACAAGTAGAGTG
1627435 ATGGTGGATTTAGGTATTAAGATTTAGGGATTTAGAGATTTAAGGGTTAAAAATTAGGGATTAAA
66 ATGGTGGATTTAGGTATTAAGATTTAGGGATTTAGAGATTTAAGGGTTAAAAATTAGGGATTAAA
1627500 ATTTAATTTTCTTCTTCTCATAAATGGAGGTTGGGTCGACGACAATGACAACAGTAGTGGAGA-T
131 ATTTAA-TTTCTTCTTCTCATAAATGGAGGTTGGGTCGACGACAATGACAACAGTAGTGGAGATT
1627564 TGGTTGAAAA-AAATTCGTCGACGACAACGAAAACAATGACAACGGTAGTGGAGATTTGGTTGAA
195 TGGTTGAAAAGAAATTCGTCGACGACAACGAAAACAATGACAACGGTAGTGGAGATTTGGTTGAA
1627628 TGATT
260 TGATT
1627633 GGTCTTGTCATCTTCCTTGTCGATTATCGTTGTCATCATCACCCTTGTCGTCGACAAGTAGAGTG
1 GGTCTTGTCATCTTCCTTGTCGATTATCGTTGTCATCATCACCCTTGTCGTCGACAAGTAGAGTG
1627698 ATGGTGGATTTAGGTATTTAAGATTTAGGGATTTTAGGAGATTTAA-GGTTAAAAATTAGGGATT
66 ATGGTGGATTTAGGTA-TTAAGATTTAGGGA-TTTA-GAGATTTAAGGGTTAAAAATTAGGGA-T
1627762 TAAAATTTAATTTTCTTCTTCTCATAAATGGAGGTTGGGTCGACGACAATGACAACAGTAGTGGA
127 TAAAATTTAA-TTTCTTCTTCTCATAAATGGAGGTTGGGTCGACGACAATGACAACAGTAGTGGA
1627827 GATTTGGTTGAAAAGAAATTCGTCGACGACAACGAAAACAATGACAACGGTAGTGGAGATTTGGT
191 GATTTGGTTGAAAAGAAATTCGTCGACGACAACGAAAACAATGACAACGGTAGTGGAGATTTGGT
1627892 TGAATGATT
256 TGAATGATT
*
1627901 GTTCGTTGTC
1 GGTC-TTGTC
1627911 GACAACGGTG
Statistics
Matches: 270, Mismatches: 1, Indels: 8
0.97 0.00 0.03
Matches are distributed among these distances:
263 81 0.30
264 14 0.05
265 20 0.07
266 77 0.29
267 11 0.04
268 62 0.23
269 5 0.02
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.33
Consensus pattern (264 bp):
GGTCTTGTCATCTTCCTTGTCGATTATCGTTGTCATCATCACCCTTGTCGTCGACAAGTAGAGTG
ATGGTGGATTTAGGTATTAAGATTTAGGGATTTAGAGATTTAAGGGTTAAAAATTAGGGATTAAA
ATTTAATTTCTTCTTCTCATAAATGGAGGTTGGGTCGACGACAATGACAACAGTAGTGGAGATTT
GGTTGAAAAGAAATTCGTCGACGACAACGAAAACAATGACAACGGTAGTGGAGATTTGGTTGAAT
GATT
Found at i:1631123 original size:75 final size:75
Alignment explanation
Indices: 1630992--1631197 Score: 301
Period size: 74 Copynumber: 2.7 Consensus size: 75
1630982 CAAAGCTAAA
* ** *
1630992 AATTCCAGATTGCTTAGAGGGAACCGATTCCCCCCCAAAGGGGGTACCGATTCCCCCCTGAATGG
1 AATTCCAGAATGCTCGGAGGGAACCGATT-CCCCCC-AAGGGGGTACCGATTCCCCCCTGAATAG
1631057 TTTGGCTCCGAG
64 TTTGGCTCCGAG
*
1631069 ATTTCCAGAATGCTCGGAGGGAACCGATT-CCCCCATAGGGGGTACCGATT-CCCCCTGAATAGT
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCA-AGGGGGTACCGATTCCCCCCTGAATAGT
1631132 TTGGCTCCGAG
65 TTGGCTCCGAG
* *
1631143 AATTCCAGTATACTCGGAGGGAACCGATTCCCCCCAA-GGGGTACCGATTCCCCCC
1 AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCAAGGGGGTACCGATTCCCCCC
1631198 CTGTTTAACG
Statistics
Matches: 118, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
73 12 0.10
74 56 0.47
75 25 0.21
77 25 0.21
ACGTcount: A:0.22, C:0.31, G:0.25, T:0.21
Consensus pattern (75 bp):
AATTCCAGAATGCTCGGAGGGAACCGATTCCCCCCAAGGGGGTACCGATTCCCCCCTGAATAGTT
TGGCTCCGAG
Found at i:1636944 original size:19 final size:19
Alignment explanation
Indices: 1636920--1636957 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
1636910 TTTTGGTGCA
*
1636920 GAGGGAATCGATCCCCCCT
1 GAGGGAACCGATCCCCCCT
*
1636939 GAGGGAACCGATTCCCCCT
1 GAGGGAACCGATCCCCCCT
1636958 TTAAAGAGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.21, C:0.37, G:0.26, T:0.16
Consensus pattern (19 bp):
GAGGGAACCGATCCCCCCT
Found at i:1639732 original size:74 final size:74
Alignment explanation
Indices: 1639572--1639765 Score: 257
Period size: 74 Copynumber: 2.6 Consensus size: 74
1639562 TTCCAAATTG
*
1639572 CTCAGAGGGAACCGATTCCCCCCCAAAGGGGGTACCGATTCCCCCCCTGAATGGTTTGGCTCCGA
1 CTCAGAGGGAACCGATT-CCCCCC-AAGGGGGTACCGATT--CCCCCTGAATAGTTTGGCTCCGA
* *
1639637 GATTTCCAGAATG
62 GAATTCCAGAATA
* * *
1639650 CTCGGAGGGAACCGATT-CCCCCATAGGGGGTACCAATTCCCCTTGAATAGTTTGGCTCCGAGAA
1 CTCAGAGGGAACCGATTCCCCCCA-AGGGGGTACCGATTCCCCCTGAATAGTTTGGCTCCGAGAA
* *
1639714 TTCTAGTATA
65 TTCCAGAATA
1639724 CTCAGAGGGAACCGATTCCCCCCAA-GGGGTACCGATTCCCCC
1 CTCAGAGGGAACCGATTCCCCCCAAGGGGGTACCGATTCCCCC
1639766 CCTGTTTAAC
Statistics
Matches: 103, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
73 15 0.15
74 47 0.46
75 7 0.07
76 18 0.17
78 16 0.16
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (74 bp):
CTCAGAGGGAACCGATTCCCCCCAAGGGGGTACCGATTCCCCCTGAATAGTTTGGCTCCGAGAAT
TCCAGAATA
Found at i:1648310 original size:14 final size:12
Alignment explanation
Indices: 1648299--1648430 Score: 55
Period size: 12 Copynumber: 10.9 Consensus size: 12
1648289 AGAATGAATG
1648299 AAAAAAAATGAA
1 AAAAAAAATGAA
*
1648311 AAAAAAAAAGAA
1 AAAAAAAATGAA
1648323 AAAGATGAAAA--AA
1 AAA-A--AAAATGAA
*
1648336 ATGAAAAAATGAA
1 A-AAAAAAATGAA
1648349 AAAATGAAAA--AA
1 AAAA--AAAATGAA
**
1648361 TGAAAAAATGAA
1 AAAAAAAATGAA
1648373 AAAATGAAAA--AA
1 AAAA--AAAATGAA
**
1648385 TGAAAAAATG-A
1 AAAAAAAATGAA
1648396 AAAAAAAA-GAGA
1 AAAAAAAATGA-A
*
1648408 AATAAAAATGAA
1 AAAAAAAATGAA
*
1648420 AAGAAAAATGA
1 AAAAAAAATGA
1648431 GGGTTTGAGA
Statistics
Matches: 90, Mismatches: 13, Indels: 34
0.66 0.09 0.25
Matches are distributed among these distances:
10 9 0.10
11 11 0.12
12 47 0.52
13 10 0.11
14 9 0.10
15 4 0.04
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (12 bp):
AAAAAAAATGAA
Found at i:1648314 original size:8 final size:8
Alignment explanation
Indices: 1648301--1648400 Score: 154
Period size: 8 Copynumber: 12.8 Consensus size: 8
1648291 AATGAATGAA
1648301 AAAAAATG
1 AAAAAATG
1648309 -AAAAA--
1 AAAAAATG
1648314 AAAAAA-G
1 AAAAAATG
1648321 AAAAAGATG
1 AAAAA-ATG
1648330 AAAAAAATG
1 -AAAAAATG
1648339 AAAAAATG
1 AAAAAATG
1648347 AAAAAATG
1 AAAAAATG
1648355 AAAAAATG
1 AAAAAATG
1648363 AAAAAATG
1 AAAAAATG
1648371 AAAAAATG
1 AAAAAATG
1648379 AAAAAATG
1 AAAAAATG
1648387 AAAAAATG
1 AAAAAATG
1648395 AAAAAA
1 AAAAAA
1648401 AAAGAGAAAT
Statistics
Matches: 87, Mismatches: 0, Indels: 10
0.90 0.00 0.10
Matches are distributed among these distances:
6 5 0.06
7 10 0.11
8 63 0.72
9 4 0.05
10 5 0.06
ACGTcount: A:0.78, C:0.00, G:0.12, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:1649675 original size:90 final size:91
Alignment explanation
Indices: 1649506--1649777 Score: 456
Period size: 90 Copynumber: 3.0 Consensus size: 91
1649496 CTCGCTCGAG
*
1649506 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTTATCCAACGAGGGAGAAGAAGTTC
1 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTC
*
1649571 ATAATGAGAGGAACTTGTTCAACCTT
66 ATAATGAGAAGAACTTGTTCAACCTT
* * * *
1649597 GGATCAATATTTCCAGTGGAGAGTTTATAATGAGAA-AACTCATCCAACGAGGGAGATGAAGTTT
1 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTC
*
1649661 ATAATGAGAAGAACTTGTTCAAACTT
66 ATAATGAGAAGAACTTGTTCAACCTT
* *
1649687 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAATGAGGGAGAAGAAATTC
1 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTC
1649752 ATAATGAGAAGAACTTGTTCAACCTT
66 ATAATGAGAAGAACTTGTTCAACCTT
1649778 ATCTCGATTC
Statistics
Matches: 166, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
90 83 0.50
91 83 0.50
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (91 bp):
GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTC
ATAATGAGAAGAACTTGTTCAACCTT
Found at i:1649922 original size:230 final size:229
Alignment explanation
Indices: 1649597--1650147 Score: 881
Period size: 230 Copynumber: 2.4 Consensus size: 229
1649587 GTTCAACCTT
* * * *
1649597 GGATCAATATTTCCAGTGGAGAGTTTATAATGAGAAAACTCATCCAACGAGGGAGATGAAGTTTA
1 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAAACTCATCCAACGAGGGAGAAGAAGTTCA
*
1649662 TAATGAGAAGAACTTGTTCAAACTTGGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAAC
66 TAATGAGAAGAACTTGTTCAACCTTGGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAAC
1649727 TCATCCAATGAGGGAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTTAT-CTCGATTCATC
131 TCATCCAATGAGGGAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTT-TGCTCGATTCATC
* * *
1649791 GCATATGGAGTTGAATTAGCAACACCTCACTCGAG
195 ACATATGGAGTTGAATCAGCAACACCTCACTCAAG
* *
1649826 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCGTCCAACGAGGGAGAAAAAGTTC
1 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAA-AACTCATCCAACGAGGGAGAAGAAGTTC
* * *
1649891 ATAATGAGAAGAACTTGTTCAACCTTGGATCAGCATTTCCAGTGGAGAGTTTATAATGAGAATAA
65 ATAATGAGAAGAACTTGTTCAACCTTGGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAA
*
1649956 CTCATCCAATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTTGCTCGATTCATC
130 CTCATCCAATGAGGGAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTTTGCTCGATTCATC
1650021 ACATATGGAGTTGAATCAGCAACACCTCACTCAAG
195 ACATATGGAGTTGAATCAGCAACACCTCACTCAAG
* * * * *
1650056 GGATCAACA-TTCTCAGTGGAAAGTTCATAATGGGAATAACTCATCCGATGAGAGAGAAGAAGTT
1 GGATCAACATTTC-CAGTGGAGAGTTCATAATGAGAA-AACTCATCCAACGAGGGAGAAGAAGTT
1650120 CATAATGAGAAGAACTTGTTCAACCTTG
64 CATAATGAGAAGAACTTGTTCAACCTTG
1650148 ACTTGTTTCC
Statistics
Matches: 297, Mismatches: 22, Indels: 5
0.92 0.07 0.02
Matches are distributed among these distances:
229 38 0.13
230 259 0.87
ACGTcount: A:0.36, C:0.17, G:0.22, T:0.25
Consensus pattern (229 bp):
GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAAACTCATCCAACGAGGGAGAAGAAGTTCA
TAATGAGAAGAACTTGTTCAACCTTGGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAAC
TCATCCAATGAGGGAGAAGAAATTCATAATGAGAAGAACTTGTTCAACCTTTGCTCGATTCATCA
CATATGGAGTTGAATCAGCAACACCTCACTCAAG
Found at i:1649951 original size:320 final size:321
Alignment explanation
Indices: 1649369--1650003 Score: 1022
Period size: 320 Copynumber: 2.0 Consensus size: 321
1649359 AAGGAGGTGA
* * * *
1649369 ATCAACATTTCAAATGGAGAGTTAGTAATGATAAGAATTCATCCGACGAGGGAGAAGAAGTCCAT
1 ATCAACATTTCAAATGGAGAGTTAGTAATGAGAAGAACTCATCCAACGAGGGAGAAGAAATCCAT
* * *
1649434 AATGAGAAGAACTTGTTCAACCTTAGCTCAATTTATCACATATGGAGTTGAATCAGTAGCACCTC
66 AATGAGAAGAACTTGTTCAACCTTAGCTCAATTCATCACATATGGAGTTGAATCAGCAACACCTC
* *
1649499 GCTCGAGGGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTTATCCAACGAGGGAGAA
131 ACTCGAGGGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAA
* * *
1649564 GAAGTTCATAATGAGAGGAACTTGTTCAACCTTGGATCAATATTTCCAGTGGAGAGTTTATAATG
196 AAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGATCAACATTTCCAGTGGAGAGTTTATAATG
* *
1649629 AGAA-AACTCATCCAACGAGGGAGATGAAGTTTATAATGAGAAGAACTTGTTCAAACTTGG
261 AGAATAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAAACTTGG
* * * *
1649689 ATCAACATTTCCAGTGGAGAGTTCA-TAATGAGAAGAACTCATCCAATGAGGGAGAAGAAATTCA
1 ATCAACATTTCAAATGGAGAGTT-AGTAATGAGAAGAACTCATCCAACGAGGGAGAAGAAATCCA
* * * *
1649753 TAATGAGAAGAACTTGTTCAACCTTATCTCGATTCATCGCATATGGAGTTGAATTAGCAACACCT
65 TAATGAGAAGAACTTGTTCAACCTTAGCTCAATTCATCACATATGGAGTTGAATCAGCAACACCT
*
1649818 CACTCGAGGGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCGTCCAACGAGGGAGA
130 CACTCGAGGGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGA
*
1649883 AAAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGATCAGCATTTCCAGTGGAGAGTTTATAAT
195 AAAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGATCAACATTTCCAGTGGAGAGTTTATAAT
*
1649948 GAGAATAACTCATCCAATGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
260 GAGAATAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
1650004 CCTTTGCTCG
Statistics
Matches: 288, Mismatches: 25, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
320 240 0.83
321 48 0.17
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (321 bp):
ATCAACATTTCAAATGGAGAGTTAGTAATGAGAAGAACTCATCCAACGAGGGAGAAGAAATCCAT
AATGAGAAGAACTTGTTCAACCTTAGCTCAATTCATCACATATGGAGTTGAATCAGCAACACCTC
ACTCGAGGGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAA
AAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGATCAACATTTCCAGTGGAGAGTTTATAATG
AGAATAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTTCAAACTTGG
Found at i:1650032 original size:91 final size:91
Alignment explanation
Indices: 1649826--1650007 Score: 310
Period size: 91 Copynumber: 2.0 Consensus size: 91
1649816 CTCACTCGAG
* *
1649826 GGATCAACATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCGTCCAACGAGGGAGAAAAAGTTC
1 GGATCAGCATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAAAAGTTC
1649891 ATAATGAGAAGAACTTGTTCAACCTT
66 ATAATGAGAAGAACTTGTTCAACCTT
* * * *
1649917 GGATCAGCATTTCCAGTGGAGAGTTTATAATGAGAATAACTCATCCAATGAGGGAGAAGAAGTTC
1 GGATCAGCATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAAAAGTTC
1649982 ATAATGAGAAGAACTTGTTCAACCTT
66 ATAATGAGAAGAACTTGTTCAACCTT
1650008 TGCTCGATTC
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 85 1.00
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (91 bp):
GGATCAGCATTTCCAGTGGAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAAAAGTTC
ATAATGAGAAGAACTTGTTCAACCTT
Found at i:1651391 original size:174 final size:174
Alignment explanation
Indices: 1651102--1651449 Score: 671
Period size: 174 Copynumber: 2.0 Consensus size: 174
1651092 CGTGTGTGGT
1651102 GGATTGTTTTGGGATTTTAGACCTTTCGGCCAAGGCAAAGGAAGGGATCGACTGGATTTTTCTTA
1 GGATTGTTTTGGGATTTTAGACCTTTCGGCCAAGGCAAAGGAAGGGATCGACTGGATTTTTCTTA
1651167 GGGTTTGTAGGCAATGGTTCGAGTCGTTGGTGGGTTAGTGGCCGACAATGTGTGAGGGGCTGCCG
66 GGGTTTGTAGGCAATGGTTCGAGTCGTTGGTGGGTTAGTGGCCGACAATGTGTGAGGGGCTGCCG
1651232 CTGTGGTTGAGTGAAGAAG-AAAGGAGTTGAGTTAGGATGAGTG
131 CTGTGGTTGAGTGAAGAAGAAAAGGAGTTGAGTTAGGATGAGTG
1651275 GGATTGTTTTGGGATTTTTAGACCTTTCGGCCAAGGCAAAGGAAGGGATCGACTGGATTTTTCTT
1 GGATTGTTTTGGGA-TTTTAGACCTTTCGGCCAAGGCAAAGGAAGGGATCGACTGGATTTTTCTT
1651340 AGGGTTTGTAGGCAATGGTTCGAGTCGTTGGTGGGTTAGTGGCCGACAATGTGTGAGGGGCTGCC
65 AGGGTTTGTAGGCAATGGTTCGAGTCGTTGGTGGGTTAGTGGCCGACAATGTGTGAGGGGCTGCC
1651405 GCTGTGGTTGAGTGAAGAAGAAAAAGGAGTTGAGTTAGGATGAGT
130 GCTGTGGTTGAGTGAAGAAG-AAAAGGAGTTGAGTTAGGATGAGT
1651450 TTCATGCAGA
Statistics
Matches: 172, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
173 14 0.08
174 135 0.78
176 23 0.13
ACGTcount: A:0.22, C:0.11, G:0.38, T:0.30
Consensus pattern (174 bp):
GGATTGTTTTGGGATTTTAGACCTTTCGGCCAAGGCAAAGGAAGGGATCGACTGGATTTTTCTTA
GGGTTTGTAGGCAATGGTTCGAGTCGTTGGTGGGTTAGTGGCCGACAATGTGTGAGGGGCTGCCG
CTGTGGTTGAGTGAAGAAGAAAAGGAGTTGAGTTAGGATGAGTG
Found at i:1656361 original size:12 final size:12
Alignment explanation
Indices: 1656344--1656386 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
1656334 AACTTAAAAT
1656344 ATTTTTGAAACA
1 ATTTTTGAAACA
*
1656356 ATTTTT-ATAAAA
1 ATTTTTGA-AACA
1656368 TATTTTTGAAACA
1 -ATTTTTGAAACA
1656381 ATTTTT
1 ATTTTT
1656387 ACAAAGTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 1 0.04
12 15 0.58
13 9 0.35
14 1 0.04
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (12 bp):
ATTTTTGAAACA
Found at i:1656366 original size:25 final size:25
Alignment explanation
Indices: 1656338--1656397 Score: 102
Period size: 25 Copynumber: 2.4 Consensus size: 25
1656328 GTTCTAAACT
1656338 TAAAATATTTTTGAAACAATTTTTA
1 TAAAATATTTTTGAAACAATTTTTA
1656363 TAAAATATTTTTGAAACAATTTTTA
1 TAAAATATTTTTGAAACAATTTTTA
* *
1656388 CAAAGTATTT
1 TAAAATATTT
1656398 CGAACCAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47
Consensus pattern (25 bp):
TAAAATATTTTTGAAACAATTTTTA
Found at i:1656564 original size:64 final size:65
Alignment explanation
Indices: 1656485--1656611 Score: 186
Period size: 65 Copynumber: 2.0 Consensus size: 65
1656475 AATTTGAATG
* * *
1656485 CATTTTGTGTACCGATGCACAG-CCATGCATCGATGCACTCCT-GATTTTATTGAAACATCGAAA
1 CATTTTGTGTACCGATGCACAGACAATGCATCGATGCACTCATGGATATT-TTGAAACATCGAAA
1656548 T
65 T
* *
1656549 CATTTTGTGTACCGATGCACAGATAATGCATCGATGCACTCATGGCTATTTTGAAACATCGAA
1 CATTTTGTGTACCGATGCACAGACAATGCATCGATGCACTCATGGATATTTTGAAACATCGAA
1656612 TGTAAGTAGT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
64 22 0.39
65 30 0.54
66 4 0.07
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (65 bp):
CATTTTGTGTACCGATGCACAGACAATGCATCGATGCACTCATGGATATTTTGAAACATCGAAAT
Found at i:1656624 original size:65 final size:64
Alignment explanation
Indices: 1656491--1656653 Score: 159
Period size: 65 Copynumber: 2.5 Consensus size: 64
1656481 AATGCATTTT
* * * ** *
1656491 GTGTACCGATGCACAGCCATGCATCGATGCACTCCTGATTTTATTGAAACATCGAAATCATTTT
1 GTGTACCGATGCACAGCAATGCATCGATGCACTCATGATATTATTGAAACATCGAAATCAAGTA
* * *
1656555 GTGTACCGATGCACAGATAATGCATCGATGCACTCATGGCTATT-TTGAAACATCG-AATGTAAG
1 GTGTACCGATGCACAG-CAATGCATCGATGCACTCAT-GATATTATTGAAACATCGAAAT-CAAG
1656618 TA
63 TA
* ** *
1656620 GTGTATCGATGCACCCCAAATGTATCGATGCACT
1 GTGTACCGATGCACAGC-AATGCATCGATGCACT
1656654 AGGTCAACTA
Statistics
Matches: 81, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
64 19 0.23
65 58 0.72
66 4 0.05
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (64 bp):
GTGTACCGATGCACAGCAATGCATCGATGCACTCATGATATTATTGAAACATCGAAATCAAGTA
Found at i:1666592 original size:2 final size:2
Alignment explanation
Indices: 1666585--1666643 Score: 118
Period size: 2 Copynumber: 29.5 Consensus size: 2
1666575 CCTATATTTG
1666585 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1666627 TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA T
1666644 CTTATCATTC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 57 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:1670104 original size:11 final size:11
Alignment explanation
Indices: 1670090--1670120 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
1670080 AAGTAAAAAT
1670090 GAAATAAAAGA
1 GAAATAAAAGA
1670101 GAAATAAAAGA
1 GAAATAAAAGA
*
1670112 AAAATAAAA
1 GAAATAAAA
1670121 CAAAATTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (11 bp):
GAAATAAAAGA
Found at i:1670125 original size:11 final size:11
Alignment explanation
Indices: 1670091--1670125 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
1670081 AGTAAAAATG
*
1670091 AAATAAAAGAG
1 AAATAAAAGAA
1670102 AAATAAAAGAA
1 AAATAAAAGAA
*
1670113 AAATAAAACAA
1 AAATAAAAGAA
1670124 AA
1 AA
1670126 TTAACCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.80, C:0.03, G:0.09, T:0.09
Consensus pattern (11 bp):
AAATAAAAGAA
Found at i:1671491 original size:217 final size:217
Alignment explanation
Indices: 1671116--1671541 Score: 834
Period size: 217 Copynumber: 2.0 Consensus size: 217
1671106 TACTGAACAC
1671116 ATTTTAGTCATAAACATGATCACAACATTCAAAAAATGCATGATGGTGTTAAATGAAATTGAAAA
1 ATTTTAGTCATAAACATGATCACAACATTCAAAAAATGCATGATGGTGTTAAATGAAATTGAAAA
1671181 CTTACAGGTCTTCCAAAGAAAGCTGAAGGCTAAAGATGTTGTAACCTCAAGATAAAAGAGACCAA
66 CTTACAGGTCTTCCAAAGAAAGCTGAAGGCTAAAGATGTTGTAACCTCAAGATAAAAGAGACCAA
*
1671246 TTTAAAGTCCCTGAAAGGGAGAGATTCAAATGATACTCGATTCAAGGTAGATTCCCATATTTGGT
131 TTTAAAGTCCCAGAAAGGGAGAGATTCAAATGATACTCGATTCAAGGTAGATTCCCATATTTGGT
1671311 GGATGCGAGACAAGATTCCCAT
196 GGATGCGAGACAAGATTCCCAT
1671333 ATTTTAGTCATAAACATGATCACAACATTCAAAAAATGCATGATGGTGTTAAATGAAATTGAAAA
1 ATTTTAGTCATAAACATGATCACAACATTCAAAAAATGCATGATGGTGTTAAATGAAATTGAAAA
*
1671398 CTTACAGGTCTTCCAAAGAAAGCTGAAGGCTAAAGATGTTGTAACCTCAAGATAAAATAGACCAA
66 CTTACAGGTCTTCCAAAGAAAGCTGAAGGCTAAAGATGTTGTAACCTCAAGATAAAAGAGACCAA
1671463 TTTAAAGTCCCAGAAAGGGAGAGATTCAAATGATACTCGATTCAAGGTAGATTCCCATATTTGGT
131 TTTAAAGTCCCAGAAAGGGAGAGATTCAAATGATACTCGATTCAAGGTAGATTCCCATATTTGGT
1671528 GGATGCGAGACAAG
196 GGATGCGAGACAAG
1671542 TTTCATAAGA
Statistics
Matches: 207, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
217 207 1.00
ACGTcount: A:0.40, C:0.15, G:0.19, T:0.26
Consensus pattern (217 bp):
ATTTTAGTCATAAACATGATCACAACATTCAAAAAATGCATGATGGTGTTAAATGAAATTGAAAA
CTTACAGGTCTTCCAAAGAAAGCTGAAGGCTAAAGATGTTGTAACCTCAAGATAAAAGAGACCAA
TTTAAAGTCCCAGAAAGGGAGAGATTCAAATGATACTCGATTCAAGGTAGATTCCCATATTTGGT
GGATGCGAGACAAGATTCCCAT
Found at i:1671930 original size:133 final size:133
Alignment explanation
Indices: 1671785--1672131 Score: 426
Period size: 133 Copynumber: 2.6 Consensus size: 133
1671775 ATCATTTTCC
* * * *
1671785 TCAGATTTGGTCTGCCTGAATAGCAGTGAATCAAATTATGTTTGATCCAATCTTCCTTGAAGAGC
1 TCAGATTTGGTCTTCCTGAATAGCAGTGAAACAAATTAAGTTTGATTCAATCTTCCTTGAAGAGC
** * * *
1671850 AGTAAAGTGGATCAAAGTTTTTTAAGTCTGATCTCTCCTAAATAGTAGTGGAAAAGATCCTCATT
66 AGCGAAGTGGATCAAAGTTTTTTAAGTCTAATCTCCCCTAAAGAGTAGTGGAAAAGATCCTCATT
1671915 CAT
131 CAT
* * * * *
1671918 TCAGATTTGGTCTTCCTGAATAGCAGTGAAGCAAATCAAGTTTGGTTCAATCTTCCCTAAAGAGC
1 TCAGATTTGGTCTTCCTGAATAGCAGTGAAACAAATTAAGTTTGATTCAATCTTCCTTGAAGAGC
* ** * *
1671983 AGCGAAGTGGATCAAAGTTTTTTGAGTCTAATCTCCCCTAAAGAGTAGTGGAGTAGATTCTCCTT
66 AGCGAAGTGGATCAAAGTTTTTTAAGTCTAATCTCCCCTAAAGAGTAGTGGAAAAGATCCTCATT
*
1672048 CTT
131 CAT
** * * * * *
1672051 TCAGAACTGATCTTTCTGAAGAGCATTGAAACAAATTAAGTTTTATTCAATCTT-CTATGAAGAG
1 TCAGATTTGGTCTTCCTGAATAGCAGTGAAACAAATTAAGTTTGATTCAATCTTCCT-TGAAGAG
*
1672115 CAGCGAAGTGAATCAAA
65 CAGCGAAGTGGATCAAA
1672132 TTATTTTTCG
Statistics
Matches: 181, Mismatches: 32, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
132 1 0.01
133 180 0.99
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.32
Consensus pattern (133 bp):
TCAGATTTGGTCTTCCTGAATAGCAGTGAAACAAATTAAGTTTGATTCAATCTTCCTTGAAGAGC
AGCGAAGTGGATCAAAGTTTTTTAAGTCTAATCTCCCCTAAAGAGTAGTGGAAAAGATCCTCATT
CAT
Found at i:1672394 original size:2 final size:2
Alignment explanation
Indices: 1672387--1672421 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
1672377 TGCGTGTGGC
1672387 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA T- TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1672422 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
1 2 0.06
2 29 0.94
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
TA
Found at i:1674286 original size:2 final size:2
Alignment explanation
Indices: 1674279--1674320 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
1674269 CCCGATGATT
1674279 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1674321 AATTAAATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1676571 original size:15 final size:15
Alignment explanation
Indices: 1676548--1676590 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
1676538 TTTTTGTCTT
1676548 TTAAAATTATTTTTA
1 TTAAAATTATTTTTA
*
1676563 TTAATATTATTTTTA
1 TTAAAATTATTTTTA
1676578 TTAAAATTATTTT
1 TTAAAATTATTTT
1676591 AAAAGATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
TTAAAATTATTTTTA
Found at i:1677786 original size:2 final size:2
Alignment explanation
Indices: 1677779--1677854 Score: 127
Period size: 2 Copynumber: 38.0 Consensus size: 2
1677769 AATAAGTCTT
*
1677779 TA TA TA TA TA TA TA TA TA TA -A GTA TT TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
1677821 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1677855 ATGTAATACT
Statistics
Matches: 70, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
1 1 0.01
2 68 0.97
3 1 0.01
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1688014 original size:20 final size:20
Alignment explanation
Indices: 1687976--1688014 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
1687966 TTCCCATTTT
*
1687976 TGCATCTTTGCATTTGCATG
1 TGCATCTTTGCATTAGCATG
* *
1687996 TGCATTTTTGTATTAGCAT
1 TGCATCTTTGCATTAGCAT
1688015 CTATAAATTG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.15, G:0.18, T:0.49
Consensus pattern (20 bp):
TGCATCTTTGCATTAGCATG
Found at i:1689374 original size:10 final size:9
Alignment explanation
Indices: 1689352--1689399 Score: 62
Period size: 10 Copynumber: 5.2 Consensus size: 9
1689342 ATAAAAAAAT
*
1689352 AAGAGAGAA
1 AAGAAAGAA
1689361 AAGAAAGCAA
1 AAGAAAG-AA
1689371 AAGAAAGAGA
1 AAGAAAGA-A
1689381 AAGAAAG-A
1 AAGAAAGAA
1689389 AAGAAAGAA
1 AAGAAAGAA
1689398 AA
1 AA
1689400 TCGATAAAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
8 8 0.23
9 10 0.29
10 17 0.49
ACGTcount: A:0.73, C:0.02, G:0.25, T:0.00
Consensus pattern (9 bp):
AAGAAAGAA
Found at i:1691462 original size:41 final size:41
Alignment explanation
Indices: 1691399--1691483 Score: 118
Period size: 41 Copynumber: 2.1 Consensus size: 41
1691389 ATATCTTAAA
*
1691399 TTGAATTTTGAATGAAGCTAAGCCTGATTTTCAGGAGTTTC
1 TTGAATTTTGAATGAAGCTAAGCCTAATTTTCAGGAGTTTC
* * *
1691440 TTGAATTTTTTAA-GAAGTTAAGCCTAATTTTTAGGAGTTTC
1 TTGAA-TTTTGAATGAAGCTAAGCCTAATTTTCAGGAGTTTC
1691481 TTG
1 TTG
1691484 GTGATAACTA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 33 0.85
42 6 0.15
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (41 bp):
TTGAATTTTGAATGAAGCTAAGCCTAATTTTCAGGAGTTTC
Found at i:1700432 original size:39 final size:39
Alignment explanation
Indices: 1700365--1700457 Score: 105
Period size: 39 Copynumber: 2.4 Consensus size: 39
1700355 TCTAGTGAAT
* * * * *
1700365 AGTTCATAATGAGTAGAACTTATACGATGAATAAGAAGA
1 AGTTCATAATAAGAAGAAATCATACGATGAAGAAGAAGA
* * * *
1700404 AGTTCATAATTAGAAGAAATCATGCGATGAGGGAGAAGA
1 AGTTCATAATAAGAAGAAATCATACGATGAAGAAGAAGA
1700443 AGTTCATAATAAGAA
1 AGTTCATAATAAGAA
1700458 AAACTTGTTC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.46, C:0.08, G:0.23, T:0.24
Consensus pattern (39 bp):
AGTTCATAATAAGAAGAAATCATACGATGAAGAAGAAGA
Found at i:1700611 original size:40 final size:40
Alignment explanation
Indices: 1700530--1700715 Score: 214
Period size: 40 Copynumber: 4.6 Consensus size: 40
1700520 TCATCCTTCT
*
1700530 CATAAGGAGTTGGATCAGCATCATCATTTCGCTCGTCCATCA
1 CATAAGGAGTTGGATCAGCATCA-C-TTTCGCTCGACCATCA
* *
1700572 CATAAGGAGTTGGATCATCATCACTTTCGCTTGACCATCA
1 CATAAGGAGTTGGATCAGCATCACTTTCGCTCGACCATCA
* * * * *
1700612 CATAAGGAGTTGTATTAGAATCATTTTTC-CTCGTCCATCA
1 CATAAGGAGTTGGATCAGCATCA-CTTTCGCTCGACCATCA
* *
1700652 CATAAGGAGTTGGATCAGCATCACCTTGGCTC-ATCCATCA
1 CATAAGGAGTTGGATCAGCATCACTTTCGCTCGA-CCATCA
* *
1700692 CGTAAGGAGTTGGATCAACATCAC
1 CATAAGGAGTTGGATCAGCATCAC
1700716 CTCAATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 93 0.76
41 5 0.04
42 22 0.18
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (40 bp):
CATAAGGAGTTGGATCAGCATCACTTTCGCTCGACCATCA
Found at i:1700657 original size:80 final size:82
Alignment explanation
Indices: 1700484--1700708 Score: 260
Period size: 80 Copynumber: 2.8 Consensus size: 82
1700474 AGCTTGATTT
* * * * * *
1700484 CATCACAAAAGGAATTGGAAT-AGAATCGACCTTGGCTCATCCTTCTCATAAGGAGTTGGATCAG
1 CATCACATAAGGAGTTGG-ATCAGCATC-ACCTTCGCTCATCCATCACATAAGGAGTTGGATCAG
*
1700548 CATCATCATTTCGCTCGTC
64 AATCATCATTTCGCTCGTC
* * * * *
1700567 CATCACATAAGGAGTTGGATCATCATCACTTTCGCTTGA-CCATCACATAAGGAGTTGTATTAGA
1 CATCACATAAGGAGTTGGATCAGCATCACCTTCGC-TCATCCATCACATAAGGAGTTGGATCAGA
*
1700631 ATCAT-TTTTC-CTCGTC
65 ATCATCATTTCGCTCGTC
* *
1700647 CATCACATAAGGAGTTGGATCAGCATCACCTTGGCTCATCCATCACGTAAGGAGTTGGATCA
1 CATCACATAAGGAGTTGGATCAGCATCACCTTCGCTCATCCATCACATAAGGAGTTGGATCA
1700709 ACATCACCTC
Statistics
Matches: 119, Mismatches: 20, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
79 2 0.02
80 58 0.49
81 4 0.03
82 33 0.28
83 22 0.18
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (82 bp):
CATCACATAAGGAGTTGGATCAGCATCACCTTCGCTCATCCATCACATAAGGAGTTGGATCAGAA
TCATCATTTCGCTCGTC
Found at i:1703230 original size:2 final size:2
Alignment explanation
Indices: 1703223--1703249 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1703213 CAAAAGGACT
1703223 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1703250 GAAAGGAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1706981 original size:8 final size:8
Alignment explanation
Indices: 1706968--1707049 Score: 80
Period size: 8 Copynumber: 10.5 Consensus size: 8
1706958 ATTCATTATC
1706968 TTTTTTCT
1 TTTTTTCT
1706976 TTTTTTCT
1 TTTTTTCT
1706984 TTTTTT-T
1 TTTTTTCT
*
1706991 TTCTTT-T
1 TTTTTTCT
*
1706998 TTTCTT-T
1 TTTTTTCT
1707005 TTTTTTCT
1 TTTTTTCT
1707013 TTTTTTCT
1 TTTTTTCT
** *
1707021 TCCTTTAT
1 TTTTTTCT
1707029 TTTTCTTCT
1 TTTT-TTCT
*
1707038 TTTTTTAT
1 TTTTTTCT
1707046 TTTT
1 TTTT
1707050 CTTTCTTTAG
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
7 17 0.28
8 37 0.61
9 7 0.11
ACGTcount: A:0.02, C:0.12, G:0.00, T:0.85
Consensus pattern (8 bp):
TTTTTTCT
Found at i:1706991 original size:11 final size:11
Alignment explanation
Indices: 1706975--1707049 Score: 77
Period size: 11 Copynumber: 7.2 Consensus size: 11
1706965 ATCTTTTTTC
1706975 TTTTTTTCTTT
1 TTTTTTTCTTT
1706986 TTTTTTTC---
1 TTTTTTTCTTT
1706994 TTTTTTTC-TT
1 TTTTTTTCTTT
1707004 TTTTTTTCTTT
1 TTTTTTTCTTT
* *
1707015 TTTTCTTCCTT
1 TTTTTTTCTTT
* *
1707026 TATTTTTCTTC
1 TTTTTTTCTTT
*
1707037 TTTTTTTATTT
1 TTTTTTTCTTT
1707048 TT
1 TT
1707050 CTTTCTTTAG
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
8 8 0.15
10 8 0.15
11 36 0.69
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:1706991 original size:18 final size:18
Alignment explanation
Indices: 1706968--1707057 Score: 103
Period size: 18 Copynumber: 5.0 Consensus size: 18
1706958 ATTCATTATC
1706968 TTTTTTCTTTTTTTCTTTT
1 TTTTTTCTTTTTTTC-TTT
1706987 TTTTTTCTTTTTTTCTTT
1 TTTTTTCTTTTTTTCTTT
*
1707005 TTTTTTCTTTTTTTCTTC
1 TTTTTTCTTTTTTTCTTT
* * *
1707023 CTTTAT-TTTTCTTCTTT
1 TTTTTTCTTTTTTTCTTT
*
1707040 TTTTATT-TTTCTTTCTTT
1 TTTT-TTCTTTTTTTCTTT
1707058 AGGAAAAATA
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
17 12 0.20
18 34 0.56
19 15 0.25
ACGTcount: A:0.02, C:0.13, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTTTCTTTTTTTCTTT
Found at i:1707032 original size:1 final size:1
Alignment explanation
Indices: 1706968--1707018 Score: 57
Period size: 1 Copynumber: 51.0 Consensus size: 1
1706958 ATTCATTATC
* * * * *
1706968 TTTTTTCTTTTTTTCTTTTTTTTTTCTTTTTTTCTTTTTTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1707019 CTTCCTTTAT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (1 bp):
T
Found at i:1715329 original size:170 final size:171
Alignment explanation
Indices: 1715047--1715387 Score: 675
Period size: 170 Copynumber: 2.0 Consensus size: 171
1715037 GCTTAATCAT
1715047 CTGCTTATAATTTATTAACCCATAAACCATAGCCCAAACATAAGCCTATGAGAACCCTGGGTACA
1 CTGCTTATAATTTATTAACCCATAAACCATAGCCCAAACATAAGCCTATGAGAACCCTGGGTACA
1715112 CGAGTTAAATATGCACCAAAGTGTTAATACACATAAGGTCGTGCCCACCATATGCACTAAGTGTC
66 CGAGTTAAATATGCACCAAAGTGTTAATACACATAAGGTCGTGCCCACCATATGCACTAAGTGTC
1715177 ATTTATATACACTATAGTGCTAATTCG-ATATACAATATGA
131 ATTTATATACACTATAGTGCTAATTCGAATATACAATATGA
1715217 CTGCTTATAATTTATTAACCCATAAACCATAGCCCAAACATAAGCCTATGAGAACCCTGGGTACA
1 CTGCTTATAATTTATTAACCCATAAACCATAGCCCAAACATAAGCCTATGAGAACCCTGGGTACA
1715282 CGAGTTAAATATGCACCAAAGTGTTAATACACATAAGGTCGTGCCCACCATATGCACTAAGTGTC
66 CGAGTTAAATATGCACCAAAGTGTTAATACACATAAGGTCGTGCCCACCATATGCACTAAGTGTC
1715347 ATTTATATACACTATAGTGCTAATTCGAATATACAATATGA
131 ATTTATATACACTATAGTGCTAATTCGAATATACAATATGA
1715388 TGTTGGACTC
Statistics
Matches: 170, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
170 157 0.92
171 13 0.08
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.28
Consensus pattern (171 bp):
CTGCTTATAATTTATTAACCCATAAACCATAGCCCAAACATAAGCCTATGAGAACCCTGGGTACA
CGAGTTAAATATGCACCAAAGTGTTAATACACATAAGGTCGTGCCCACCATATGCACTAAGTGTC
ATTTATATACACTATAGTGCTAATTCGAATATACAATATGA
Found at i:1719565 original size:23 final size:23
Alignment explanation
Indices: 1719535--1719583 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
1719525 AATGGATCAG
1719535 TGTAATTGTGGGAGATATGTTTA
1 TGTAATTGTGGGAGATATGTTTA
1719558 TGTAATTGTGGGAGATATGTTTA
1 TGTAATTGTGGGAGATATGTTTA
1719581 TGT
1 TGT
1719584 TATGCTAGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (23 bp):
TGTAATTGTGGGAGATATGTTTA
Found at i:1721834 original size:7 final size:7
Alignment explanation
Indices: 1721817--1721853 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
1721807 GATTTTGCAA
1721817 AAAAAAG
1 AAAAAAG
1721824 -AAAAAG
1 AAAAAAG
1721830 AAAAAAG
1 AAAAAAG
1721837 AAAAAA-
1 AAAAAAG
1721843 AAAGAAAG
1 AAA-AAAG
1721851 AAA
1 AAA
1721854 GAATAGAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
6 9 0.33
7 15 0.56
8 3 0.11
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:1721835 original size:14 final size:13
Alignment explanation
Indices: 1721815--1721853 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
1721805 GAGATTTTGC
1721815 AAAAAAAAGAAAA
1 AAAAAAAAGAAAA
*
1721828 AGAAAAAAGAAAA
1 AAAAAAAAGAAAA
1721841 AAAAAGAAAGAAA
1 AAAAA-AAAGAAA
1721854 GAATAGAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 16 0.70
14 7 0.30
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (13 bp):
AAAAAAAAGAAAA
Found at i:1721845 original size:23 final size:26
Alignment explanation
Indices: 1721815--1721868 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
1721805 GAGATTTTGC
1721815 AAAAAAAAG-AA-AAAGAA-AAAAGA
1 AAAAAAAAGAAAGAAAGAATAAAAGA
*
1721838 AAAAAAAAGAAAGAAAGAATAGAAGA
1 AAAAAAAAGAAAGAAAGAATAAAAGA
1721864 AAAAA
1 AAAAA
1721869 TGCATGAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 9 0.33
24 2 0.07
25 6 0.22
26 10 0.37
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (26 bp):
AAAAAAAAGAAAGAAAGAATAAAAGA
Found at i:1723034 original size:15 final size:15
Alignment explanation
Indices: 1723014--1723060 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
1723004 AAAATGTAAC
1723014 AAATTATTTTAAAAT
1 AAATTATTTTAAAAT
1723029 AAATTATTTT--AAT
1 AAATTATTTTAAAAT
*
1723042 AAATT-TTAATAAAAT
1 AAATTATT-TTAAAAT
1723057 AAAT
1 AAAT
1723061 GATTATATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
12 2 0.07
13 9 0.32
15 17 0.61
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAATTATTTTAAAAT
Found at i:1730487 original size:14 final size:14
Alignment explanation
Indices: 1730468--1730494 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1730458 CAATGGATTG
1730468 CTTGGTACTATTTT
1 CTTGGTACTATTTT
1730482 CTTGGTACTATTT
1 CTTGGTACTATTT
1730495 GTTGTCAGTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (14 bp):
CTTGGTACTATTTT
Found at i:1732245 original size:71 final size:73
Alignment explanation
Indices: 1732064--1732257 Score: 277
Period size: 74 Copynumber: 2.7 Consensus size: 73
1732054 TTTATCTTTG
* * * * * *
1732064 TTTTAGGTATTTTAGTTTAAATAGGTTTTATTATTTTAATTAAGTTTTAGGATATTATTTTTATA
1 TTTTAGGTATTTTAGTTTAAATAGGTTTTAGTGTTTTAATTAGGATTTAGAATATTATTTTTAAA
*
1732129 TTTTATCT
66 TATTATCT
1732137 TTTCTAGGTATTTTAGTTTAAATAGGTTTTAGTGTTTTAATTAGGATTTAGAATATTA-TTTTAA
1 TTT-TAGGTATTTTAGTTTAAATAGGTTTTAGTGTTTTAATTAGGATTTAGAATATTATTTTTAA
1732201 ATATTAT-T
65 ATATTATCT
*
1732209 TTTTAGGTATTTTAGTTTACATA-GTTTTAAGTGTTTTAATTAGGATTTA
1 TTTTAGGTATTTTAGTTTAAATAGGTTTT-AGTGTTTTAATTAGGATTTA
1732258 AGATGTTTTA
Statistics
Matches: 111, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
70 5 0.05
71 39 0.35
72 4 0.04
73 14 0.13
74 49 0.44
ACGTcount: A:0.28, C:0.02, G:0.13, T:0.57
Consensus pattern (73 bp):
TTTTAGGTATTTTAGTTTAAATAGGTTTTAGTGTTTTAATTAGGATTTAGAATATTATTTTTAAA
TATTATCT
Found at i:1732794 original size:19 final size:20
Alignment explanation
Indices: 1732752--1732794 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
1732742 TTATCCCAAT
* * *
1732752 TTATTTATTTTTTAATTTCT
1 TTATTTAATTTTTAATCTCA
1732772 TTATTTAATTTTT-ATCTCA
1 TTATTTAATTTTTAATCTCA
1732791 TTAT
1 TTAT
1732795 ACTTCTTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (20 bp):
TTATTTAATTTTTAATCTCA
Found at i:1732906 original size:36 final size:36
Alignment explanation
Indices: 1732837--1732905 Score: 97
Period size: 36 Copynumber: 1.9 Consensus size: 36
1732827 CTTATTACTA
*
1732837 TTTTTAATTCATTATTCATTATTTTCTTATTTTTGT
1 TTTTTAATTCATAATTCATTATTTTCTTATTTTTGT
*
1732873 TTTTTAATTTATAATT-ATTTATTTT-TTATTTTT
1 TTTTTAATTCATAATTCA-TTATTTTCTTATTTTT
1732906 TTCAATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
35 9 0.30
36 21 0.70
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.72
Consensus pattern (36 bp):
TTTTTAATTCATAATTCATTATTTTCTTATTTTTGT
Found at i:1735320 original size:37 final size:37
Alignment explanation
Indices: 1735278--1735351 Score: 96
Period size: 37 Copynumber: 2.0 Consensus size: 37
1735268 TTAATTTAAA
*
1735278 TAATTACTA-AATAATATTTTATATAAATAAATATTAT
1 TAATTA-TATAATAATATTTAATATAAATAAATATTAT
* * *
1735315 TAATTATATTATAATATTTAATATATATATATATTAT
1 TAATTATATAATAATATTTAATATAAATAAATATTAT
1735352 GTATAATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 2 0.06
37 30 0.94
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (37 bp):
TAATTATATAATAATATTTAATATAAATAAATATTAT
Found at i:1735322 original size:20 final size:18
Alignment explanation
Indices: 1735278--1735333 Score: 53
Period size: 20 Copynumber: 3.0 Consensus size: 18
1735268 TTAATTTAAA
1735278 TAATTACTAAATAATATTT
1 TAATTA-TAAATAATATTT
1735297 T-A-TATAAATAAATATTAT
1 TAATTATAAAT-AATATT-T
*
1735315 TAATTATATTATAATATTT
1 TAATTATA-AATAATATTT
1735334 AATATATATA
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
16 5 0.16
17 8 0.26
18 3 0.10
19 3 0.10
20 10 0.32
21 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATTATAAATAATATTT
Found at i:1735347 original size:20 final size:20
Alignment explanation
Indices: 1735288--1735347 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 20
1735278 TAATTACTAA
* * *
1735288 ATAATATTTTATATAAATAA
1 ATAATATTTAATATATATAT
*
1735308 ATATTA-TTAAT-TATAT-T
1 ATAATATTTAATATATATAT
1735325 ATAATATTTAATATATATAT
1 ATAATATTTAATATATATAT
1735345 ATA
1 ATA
1735348 TTATGTATAA
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
17 5 0.16
18 9 0.28
19 9 0.28
20 9 0.28
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATAATATTTAATATATATAT
Found at i:1736692 original size:3 final size:3
Alignment explanation
Indices: 1736686--1736718 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
1736676 AATTATTAAG
1736686 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1736719 TTTATTACGT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:1753664 original size:32 final size:31
Alignment explanation
Indices: 1753629--1753690 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 31
1753619 TTTAAATAGA
1753629 TTTTAGTATTTTAAT-TATGTTTTAGGATATTAT
1 TTTTA-TATTTT-ATCTATGTTTTAGG-TATTAT
*
1753662 TTTTATATTTTATCTTTGTTTTAGGTATT
1 TTTTATATTTTATCTATGTTTTAGGTATT
1753691 TTAGTTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
31 6 0.22
32 16 0.59
33 5 0.19
ACGTcount: A:0.23, C:0.02, G:0.11, T:0.65
Consensus pattern (31 bp):
TTTTATATTTTATCTATGTTTTAGGTATTAT
Found at i:1753749 original size:76 final size:75
Alignment explanation
Indices: 1753589--1753732 Score: 216
Period size: 76 Copynumber: 1.9 Consensus size: 75
1753579 ATTTTAAACA
* * *
1753589 TTATATTTTATCTTTATTTAGGTATTTTACTTTAAATAGATTTTAGTATTTTAATTATGTTTTAG
1 TTATATTTTATCTTTATTTAGGTATTTTACTTTAAATAGATTTTAGTATTTTAATTAGGATTTAA
*
1753654 GATATTATTT
66 GATATTATTC
* * *
1753664 TTATATTTTATCTTTGTTTTAGGTATTTTAGTTTAAATAGGTTTTAGTATTTTAATTAGGATTTA
1 TTATATTTTATCTTT-ATTTAGGTATTTTACTTTAAATAGATTTTAGTATTTTAATTAGGATTTA
1753729 AGAT
65 AGAT
1753733 GTTTTAGCTT
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
75 15 0.24
76 47 0.76
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (75 bp):
TTATATTTTATCTTTATTTAGGTATTTTACTTTAAATAGATTTTAGTATTTTAATTAGGATTTAA
GATATTATTC
Found at i:1754477 original size:22 final size:21
Alignment explanation
Indices: 1754427--1754478 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
1754417 TTTAAATTCA
* * *
1754427 TTATTTATTATTTTATGATTT
1 TTATTTTTTAATTTATAATTT
1754448 TTATTTTTTTAATTTATAATTAT
1 TTA-TTTTTTAATTTATAATT-T
1754471 TTATTTTT
1 TTATTTTT
1754479 ATACCTTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
21 3 0.12
22 19 0.73
23 4 0.15
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (21 bp):
TTATTTTTTAATTTATAATTT
Found at i:1754820 original size:27 final size:27
Alignment explanation
Indices: 1754790--1754856 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
1754780 TGAATGATAG
*
1754790 GACTGAAATACCCTTGAAC-TCTAAAAT
1 GACTGAAATACCCTTAAACAT-TAAAAT
1754817 GACTGAAATACCCTTAAACATTAAAAT
1 GACTGAAATACCCTTAAACATTAAAAT
* *
1754844 AAC-AAAATACCCT
1 GACTGAAATACCCT
1754857 GAGCTTTGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 9 0.25
27 26 0.72
28 1 0.03
ACGTcount: A:0.46, C:0.22, G:0.07, T:0.24
Consensus pattern (27 bp):
GACTGAAATACCCTTAAACATTAAAAT
Found at i:1755942 original size:39 final size:39
Alignment explanation
Indices: 1755877--1756013 Score: 129
Period size: 39 Copynumber: 3.5 Consensus size: 39
1755867 ACGCTACGGC
*
1755877 TAGGGTAAGTCCTTATCTCAAGCTCCTTTTCTTTGTGCA
1 TAGGGTAAGTCCTTATCTCAAGCTCCTTTGCTTTGTGCA
1755916 TAGGGTAAGTCCTTA-CTGC-AGACTCCTTTGCTTTGTGCA
1 TAGGGTAAGTCCTTATCT-CAAG-CTCCTTTGCTTTGTGCA
* * * * *
1755955 CT-TGGTAAGTTCTTACCAT-AAGCTCATTTGCTTCGTGCA
1 -TAGGGTAAGTCCTTATC-TCAAGCTCCTTTGCTTTGTGCA
* **
1755994 TAGGGGAAAACCTTATCTCA
1 TAGGGTAAGTCCTTATCTCA
1756014 TGCCCATTTT
Statistics
Matches: 79, Mismatches: 11, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
38 6 0.08
39 68 0.86
40 4 0.05
41 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (39 bp):
TAGGGTAAGTCCTTATCTCAAGCTCCTTTGCTTTGTGCA
Found at i:1756238 original size:17 final size:16
Alignment explanation
Indices: 1756197--1756242 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 16
1756187 TAGATGGTAT
1756197 TACTATTG-TTTTAAA
1 TACTATTGTTTTTAAA
*
1756212 -AATA-TGTTTTTAAA
1 TACTATTGTTTTTAAA
1756226 CTACTATTGTTTTTAAA
1 -TACTATTGTTTTTAAA
1756243 AGATTTGTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 2 0.08
14 10 0.40
16 3 0.12
17 10 0.40
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.52
Consensus pattern (16 bp):
TACTATTGTTTTTAAA
Found at i:1759575 original size:39 final size:40
Alignment explanation
Indices: 1759520--1759612 Score: 136
Period size: 39 Copynumber: 2.4 Consensus size: 40
1759510 CCATCTTCCA
* * *
1759520 AGAACTCTTAAATTCACAATAAAATACTTTAACTCCCAAG
1 AGAACTCTTAAATTCACAATAAAACACTCTAAATCCCAAG
*
1759560 AGAAC-CTTAATTTCACAATAAAACACTCTAAATCCCAAG
1 AGAACTCTTAAATTCACAATAAAACACTCTAAATCCCAAG
1759599 AG-ACTCTTAAATTC
1 AGAACTCTTAAATTC
1759613 CCCCATTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
38 2 0.04
39 40 0.85
40 5 0.11
ACGTcount: A:0.44, C:0.24, G:0.05, T:0.27
Consensus pattern (40 bp):
AGAACTCTTAAATTCACAATAAAACACTCTAAATCCCAAG
Found at i:1760845 original size:17 final size:15
Alignment explanation
Indices: 1760823--1760867 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 15
1760813 AAATTCTCAA
1760823 ATTCTTTTATATTTT
1 ATTCTTTTATATTTT
*
1760838 AGATTCTTTTAT-GTTT
1 --ATTCTTTTATATTTT
1760854 ATTCTTTTATATTT
1 ATTCTTTTATATTT
1760868 CATGTGATTC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
14 10 0.40
15 2 0.08
16 3 0.12
17 10 0.40
ACGTcount: A:0.20, C:0.07, G:0.04, T:0.69
Consensus pattern (15 bp):
ATTCTTTTATATTTT
Found at i:1764683 original size:32 final size:32
Alignment explanation
Indices: 1764647--1764766 Score: 111
Period size: 32 Copynumber: 3.8 Consensus size: 32
1764637 TAAGGTGACA
* *
1764647 CTTGGGTAGGCTCTGAAGCCCCAAGGTATTTC
1 CTTGGGTAGGCTCTTAAGCCCCAAGGTATTAC
* * *
1764679 CTTGGGTAGTCT-TTAAGGCCCTAAGGTATTCC
1 CTTGGGTAGGCTCTTAA-GCCCCAAGGTATTAC
* * * *
1764711 CTTGGATAGGCTCTTAGGACCCAAGGTA-CAC
1 CTTGGGTAGGCTCTTAAGCCCCAAGGTATTAC
1764742 TCTTGGGTAGGCT-TTCAAGCCCCAA
1 -CTTGGGTAGGCTCTT-AAGCCCCAA
1764767 TATAATCCCT
Statistics
Matches: 70, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
31 6 0.09
32 61 0.87
33 3 0.04
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (32 bp):
CTTGGGTAGGCTCTTAAGCCCCAAGGTATTAC
Found at i:1766300 original size:30 final size:29
Alignment explanation
Indices: 1766266--1766346 Score: 80
Period size: 30 Copynumber: 2.9 Consensus size: 29
1766256 TTTAAAACTA
1766266 ATTTATTATTTATATTTTAATAATATTTAT
1 ATTTATTATTTATATTTTAATAATA-TTAT
* * *
1766296 ATTTATTACTAATAATTTT-A-GA-ATTAT
1 ATTTATTATTTAT-ATTTTAATAATATTAT
*
1766323 -TTTATTATTTATATTCTAATAATA
1 ATTTATTATTTATATTTTAATAATA
1766347 GTTTTTAAAC
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
25 4 0.10
26 11 0.28
27 5 0.12
28 2 0.05
29 1 0.03
30 12 0.30
31 5 0.12
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.58
Consensus pattern (29 bp):
ATTTATTATTTATATTTTAATAATATTAT
Found at i:1766668 original size:2 final size:2
Alignment explanation
Indices: 1766661--1766690 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1766651 ATTAGCGTTC
1766661 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1766691 GGGTTGGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1771294 original size:31 final size:31
Alignment explanation
Indices: 1771256--1771322 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
1771246 CAGTTACGTC
* *
1771256 GGGGACCATATTGCAAACGGACTAAATGTTG
1 GGGGACCATATTACAAACGGACTAAATATTG
*
1771287 GGGGACCATATTATAAACGGACTAAATATTG
1 GGGGACCATATTACAAACGGACTAAATATTG
1771318 GGGGA
1 GGGGA
1771323 TTGTATTGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.34, C:0.13, G:0.30, T:0.22
Consensus pattern (31 bp):
GGGGACCATATTACAAACGGACTAAATATTG
Found at i:1775569 original size:98 final size:98
Alignment explanation
Indices: 1775400--1775597 Score: 387
Period size: 98 Copynumber: 2.0 Consensus size: 98
1775390 AGCTGGTTGA
1775400 GTGTCTTCTTTATTAAAAACCAGATCCTTTAACTTTGAACGCAATATGACATCAACATGAATTAT
1 GTGTCTTCTTTATTAAAAACCAGATCCTTTAACTTTGAACGCAATATGACATCAACATGAATTAT
1775465 AATTCCAGAAGAAAAAAAGATTAGAATATGAAG
66 AATTCCAGAAGAAAAAAAGATTAGAATATGAAG
1775498 GTGTCTTCTTTATTAAAAACCAGATCCTTTAACTTTGAACGCAATATGACATCAACATGAATTAT
1 GTGTCTTCTTTATTAAAAACCAGATCCTTTAACTTTGAACGCAATATGACATCAACATGAATTAT
*
1775563 AATTCCAGAAGAAAAAAATATTAGAATATGAAG
66 AATTCCAGAAGAAAAAAAGATTAGAATATGAAG
1775596 GT
1 GT
1775598 AGCAGGAATT
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 99 1.00
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.30
Consensus pattern (98 bp):
GTGTCTTCTTTATTAAAAACCAGATCCTTTAACTTTGAACGCAATATGACATCAACATGAATTAT
AATTCCAGAAGAAAAAAAGATTAGAATATGAAG
Found at i:1781491 original size:27 final size:25
Alignment explanation
Indices: 1781445--1781530 Score: 88
Period size: 27 Copynumber: 3.4 Consensus size: 25
1781435 ATTTCATAGA
*
1781445 AATAATATTATTAAATTATTAATAAT
1 AATAATATTATTTAA-TATTAATAAT
1781471 GAATAATATTATTTATATATT--TAAT
1 -AATAATATTATTTA-ATATTAATAAT
*
1781496 ATTAATATTAATATTAATATTAAT-AT
1 AATAATATT-AT-TTAATATTAATAAT
1781522 AATAATATT
1 AATAATATT
1781531 TTAATAAAGA
Statistics
Matches: 51, Mismatches: 3, Indels: 11
0.78 0.05 0.17
Matches are distributed among these distances:
24 8 0.16
25 11 0.22
26 13 0.25
27 18 0.35
28 1 0.02
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (25 bp):
AATAATATTATTTAATATTAATAAT
Found at i:1781502 original size:6 final size:6
Alignment explanation
Indices: 1781474--1781525 Score: 65
Period size: 6 Copynumber: 8.8 Consensus size: 6
1781464 TAATAATGAA
1781474 TAATAT T-AT-T TATATATT TAATAT TAATAT TAATAT TAATAT TAATA-
1 TAATAT TAATAT TA-ATA-T TAATAT TAATAT TAATAT TAATAT TAATAT
1781521 TAATA
1 TAATA
1781526 ATATTTTAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
4 2 0.05
5 7 0.17
6 27 0.64
7 3 0.07
8 3 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TAATAT
Found at i:1781511 original size:54 final size:53
Alignment explanation
Indices: 1781307--1781530 Score: 167
Period size: 54 Copynumber: 4.2 Consensus size: 53
1781297 AAGTATTTTT
* * *
1781307 TAATAATATAATATTATATTTTTAATATT-ATAATAAAATAATTAACTATATT-ATAA
1 TAATAATATTAT-TTATATATTTAATATTAATAAT--AAT-ATTAAAT-TATTAATAA
** * * *
1781363 TAAT-ATAAGATATTATATTTTTTATTTTAATAATATATAATTAAATTATTAATAA
1 TAATAATATTAT-TTATATATTTAATATTAATAATA-AT-ATTAAATTATTAATAA
* * * ** *
1781418 -ATTTATATTATTTAT-TAATTTCATAGAAATAATATTATTAAATTATTAATAA
1 TAATAATATTATTTATAT-ATTTAATATTAATAATAATATTAAATTATTAATAA
*
1781470 TGAATAATATTATTTATATATTTAATATTAATATTAATATT-AA-TATTAAT-A
1 T-AATAATATTATTTATATATTTAATATTAATAATAATATTAAATTATTAATAA
1781521 TAATAATATT
1 TAATAATATT
1781531 TTAATAAAGA
Statistics
Matches: 139, Mismatches: 21, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
50 9 0.06
51 2 0.01
52 23 0.17
53 4 0.03
54 53 0.38
55 39 0.28
56 9 0.06
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (53 bp):
TAATAATATTATTTATATATTTAATATTAATAATAATATTAAATTATTAATAA
Done.